Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39865 * 126.04122 * 2 1 4 4 N 1.30840 * 108.19991 * 179.73925 * 3 2 1 5 5 N 1.40084 * 108.20604 * 0.40164 * 4 3 2 6 6 C 1.46497 * 126.03668 * 179.85215 * 5 4 3 7 7 C 1.53002 * 109.47492 * 304.69554 * 6 5 4 8 8 C 1.50696 * 109.47595 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99774 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00497 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00345 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47032 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.50960 * 304.89959 * 12 11 10 14 14 C 1.53302 * 109.50972 * 184.75130 * 12 11 10 15 15 N 1.47155 * 108.38215 * 187.77507 * 14 12 11 16 16 C 1.36933 * 120.97843 * 230.51273 * 15 14 12 17 17 H 1.07990 * 120.00405 * 26.24812 * 16 15 14 18 18 C 1.38817 * 119.99381 * 206.24708 * 16 15 14 19 19 N 1.31612 * 120.00339 * 16.91135 * 18 16 15 20 20 Si 1.86806 * 119.99694 * 196.90519 * 18 16 15 21 21 H 1.48501 * 109.46873 * 90.00401 * 20 18 16 22 22 H 1.48492 * 109.47127 * 210.00126 * 20 18 16 23 23 H 1.48497 * 109.47374 * 330.00468 * 20 18 16 24 24 C 1.47151 * 118.03335 * 50.53268 * 15 14 12 25 25 C 1.53293 * 108.38859 * 309.46455 * 24 15 14 26 26 O 1.42956 * 109.22106 * 52.30388 * 25 24 15 27 27 C 1.34943 * 107.92592 * 359.59122 * 5 4 3 28 28 H 1.09000 * 109.47668 * 270.00405 * 1 2 3 29 29 H 1.09004 * 109.47517 * 30.00221 * 1 2 3 30 30 H 1.09002 * 109.47591 * 150.00125 * 1 2 3 31 31 H 1.08001 * 125.89819 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47356 * 64.68978 * 6 5 4 33 33 H 1.09000 * 109.47569 * 184.68903 * 6 5 4 34 34 H 1.09001 * 109.47044 * 299.99781 * 7 6 5 35 35 H 1.09000 * 109.47244 * 59.99151 * 7 6 5 36 36 H 0.97002 * 119.99396 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47153 * 300.00849 * 11 10 8 38 38 H 1.09002 * 109.46574 * 60.00554 * 11 10 8 39 39 H 1.09003 * 109.67672 * 307.49549 * 14 12 11 40 40 H 1.08992 * 109.68378 * 68.05001 * 14 12 11 41 41 H 0.97000 * 120.00498 * 179.97438 * 19 18 16 42 42 H 1.09009 * 109.67646 * 189.73934 * 24 15 14 43 43 H 1.08996 * 109.68302 * 69.19215 * 24 15 14 44 44 H 1.09001 * 109.51169 * 292.37688 * 25 24 15 45 45 H 1.08997 * 109.51467 * 172.22986 * 25 24 15 46 46 H 1.07994 * 126.12861 * 180.21790 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5753 0.7301 0.0057 5 7 3.5843 -0.6707 0.0001 6 6 4.7744 -1.5250 0.0006 7 6 5.6714 -1.1507 -1.1810 8 6 6.8960 -2.0290 -1.1802 9 8 7.0376 -2.8712 -0.3190 10 7 7.8338 -1.8788 -2.1364 11 6 9.0245 -2.7323 -2.1353 12 6 9.9214 -2.3580 -3.3169 13 1 9.3478 -2.4163 -4.2421 14 6 11.1074 -3.3269 -3.3866 15 7 12.0477 -2.8368 -4.4069 16 6 12.5153 -3.6664 -5.3909 17 1 11.9284 -4.5171 -5.7041 18 6 13.7438 -3.4137 -5.9859 19 7 14.6027 -2.6039 -5.4039 20 14 14.1778 -4.2232 -7.6125 21 1 13.7364 -3.3528 -8.7318 22 1 15.6473 -4.4219 -7.6899 23 1 13.4947 -5.5382 -7.7089 24 6 12.4709 -1.4291 -4.3383 25 6 11.2185 -0.5528 -4.2223 26 8 10.4111 -1.0263 -3.1418 27 6 2.3031 -1.0943 0.0001 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9951 2.1577 -0.0004 32 1 5.3228 -1.3837 0.9319 33 1 4.4727 -2.5686 -0.0886 34 1 5.1232 -1.2920 -2.1125 35 1 5.9732 -0.1071 -1.0919 36 1 7.7207 -1.2049 -2.8250 37 1 9.5727 -2.5899 -1.2040 38 1 8.7233 -3.7761 -2.2236 39 1 11.6053 -3.3677 -2.4178 40 1 10.7538 -4.3208 -3.6603 41 1 15.4613 -2.4276 -5.8195 42 1 13.0203 -1.1665 -5.2424 43 1 13.1062 -1.2789 -3.4654 44 1 10.6505 -0.6047 -5.1512 45 1 11.5127 0.4793 -4.0318 46 1 1.9723 -2.1223 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753658128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = 15.075612 kcal Electronic energy + Delta-G solvation = -26327.620268 eV Core-core repulsion = 22447.765064 eV Total energy + Delta-G solvation = -3879.855204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48823 -39.86678 -38.51780 -35.15977 -34.68900 -34.33311 -32.08447 -31.68767 -31.02263 -30.34939 -27.71613 -26.81734 -25.57902 -24.19759 -23.21056 -21.88850 -21.11483 -20.74472 -20.27443 -19.59257 -17.72129 -17.02681 -16.51544 -16.29230 -16.11558 -15.65314 -15.22216 -15.00382 -14.60023 -14.45253 -14.05040 -13.96866 -13.77876 -13.56201 -13.30196 -13.24667 -13.12249 -12.99436 -12.75686 -12.42721 -12.37096 -12.20627 -11.66344 -11.60883 -11.16966 -10.90767 -10.78769 -10.77623 -10.46772 -10.29927 -10.10536 -10.01798 -9.73643 -9.67676 -9.13008 -9.08490 -8.61152 -8.59072 -6.81286 -5.89116 -3.33200 1.60925 2.15814 2.50058 2.51808 3.14823 3.30969 3.38052 3.39416 4.15517 4.19351 4.38453 4.41496 4.51913 4.66679 4.77401 4.96842 5.00577 5.07758 5.14003 5.28226 5.30289 5.40015 5.41858 5.45081 5.46054 5.56645 5.71796 5.73985 5.78070 5.85123 5.96878 6.09359 6.22502 6.31327 6.38914 6.42086 6.43262 6.69387 6.72548 7.04945 7.40860 7.43556 7.46855 7.65873 7.79559 8.09368 8.28153 9.06227 9.68821 10.25499 11.18967 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032216 B = 0.001854 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.914058 B =15097.404971 C =15192.255105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.247 4.247 3 C 0.047 3.953 4 N -0.294 5.294 5 N -0.371 5.371 6 C 0.151 3.849 7 C -0.153 4.153 8 C 0.517 3.483 9 O -0.548 6.548 10 N -0.717 5.717 11 C 0.130 3.870 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C 0.055 3.945 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.181 0.819 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.256 0.744 42 H 0.095 0.905 43 H 0.029 0.971 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.581 5.305 8.128 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.259 4.259 3 C -0.139 4.139 4 N -0.115 5.115 5 N -0.153 5.153 6 C 0.030 3.970 7 C -0.193 4.193 8 C 0.302 3.698 9 O -0.427 6.427 10 N -0.367 5.367 11 C 0.006 3.994 12 C 0.005 3.995 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.198 0.802 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.936 5.079 8.840 25.100 hybrid contribution -0.343 -0.412 -1.476 1.570 sum -23.279 4.667 7.364 24.858 Atomic orbital electron populations 1.20036 0.89361 1.02096 1.01454 1.20161 0.97131 0.91914 1.16648 1.23816 0.89979 0.99828 1.00293 1.77350 1.21267 0.88899 1.23939 1.48674 1.05462 1.04757 1.56416 1.21428 0.83218 0.92604 0.99755 1.21867 0.94987 1.02126 1.00368 1.20276 0.84113 0.83976 0.81408 1.90725 1.78680 1.36038 1.37233 1.45950 1.21434 1.39047 1.30290 1.21452 0.84370 0.94148 0.99443 1.22810 0.95252 0.85480 0.96004 0.92358 1.21442 0.90239 0.95384 0.93502 1.44066 1.51505 1.06651 1.29514 1.19208 0.99634 1.08825 1.10962 0.91291 1.25056 0.94988 0.99730 0.99828 1.70028 1.07190 1.39750 1.37653 0.86230 0.77367 0.79092 0.83721 1.21366 1.21634 1.20363 1.21452 0.92030 0.82877 1.02313 1.23330 0.93882 0.97996 0.88604 1.87788 1.69055 1.29087 1.44990 1.22384 0.84160 1.00142 1.02430 0.92238 0.91915 0.92229 0.80189 0.88713 0.87690 0.88380 0.87321 0.76082 0.90540 0.90028 0.95203 0.91766 0.93443 0.88737 0.95333 0.94097 0.89994 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.37 36.00 0.37 -0.01 16 2 C -0.25 -2.00 6.10 -105.06 -0.64 -2.64 16 3 C 0.05 0.43 11.96 -17.37 -0.21 0.22 16 4 N -0.29 -3.28 12.42 30.62 0.38 -2.90 16 5 N -0.37 -3.60 3.68 -61.37 -0.23 -3.82 16 6 C 0.15 1.34 5.80 -4.04 -0.02 1.32 16 7 C -0.15 -1.37 5.89 -27.88 -0.16 -1.53 16 8 C 0.52 6.20 7.83 -10.99 -0.09 6.12 16 9 O -0.55 -8.35 15.98 5.55 0.09 -8.26 16 10 N -0.72 -8.69 5.50 -60.30 -0.33 -9.02 16 11 C 0.13 1.86 5.34 -4.04 -0.02 1.83 16 12 C 0.06 1.08 2.81 -26.58 -0.07 1.01 16 13 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 14 C 0.12 2.47 6.02 -3.53 -0.02 2.45 16 15 N -0.59 -14.58 3.05 -171.83 -0.52 -15.10 16 16 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.68 11.14 55.49 0.62 -25.06 16 20 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.14 3.25 5.44 -3.54 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.10 10.33 -35.23 -0.36 -7.46 16 27 C 0.05 0.44 11.36 -17.22 -0.20 0.25 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.09 0.93 8.10 -51.93 -0.42 0.50 16 33 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.43 6.14 -51.92 -0.32 2.11 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -32.90 382.23 -8.06 -40.96 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.38 Total: 2.54 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.05 Total: 6.22 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.08 Total: -55.91 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.90 -8.06 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753658128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.037 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds