Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39868 * 126.04410 * 2 1 4 4 N 1.30837 * 108.20679 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20128 * 359.97438 * 4 3 2 6 6 C 1.46505 * 126.03593 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47041 * 305.03226 * 6 5 4 8 8 C 1.50702 * 109.46940 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99964 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46812 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.51234 * 60.10731 * 12 11 10 14 14 C 1.53300 * 109.55283 * 180.22831 * 12 11 10 15 15 N 1.47230 * 108.40193 * 172.25773 * 14 12 11 16 16 C 1.36935 * 121.02940 * 129.46646 * 15 14 12 17 17 H 1.07999 * 119.99965 * 333.30799 * 16 15 14 18 18 C 1.38815 * 119.99997 * 153.30379 * 16 15 14 19 19 N 1.31614 * 120.00002 * 343.56857 * 18 16 15 20 20 Si 1.86801 * 119.99701 * 163.57118 * 18 16 15 21 21 H 1.48505 * 109.47136 * 90.00080 * 20 18 16 22 22 H 1.48506 * 109.47066 * 210.00069 * 20 18 16 23 23 H 1.48493 * 109.47497 * 330.00001 * 20 18 16 24 24 C 1.47147 * 117.99031 * 309.48419 * 15 14 12 25 25 C 1.53299 * 108.41525 * 50.52100 * 24 15 14 26 26 O 1.42963 * 109.22240 * 307.67925 * 25 24 15 27 27 C 1.34945 * 107.92852 * 0.26356 * 5 4 3 28 28 H 1.09003 * 109.47238 * 90.02654 * 1 2 3 29 29 H 1.09001 * 109.47386 * 210.02724 * 1 2 3 30 30 H 1.09008 * 109.47233 * 330.02390 * 1 2 3 31 31 H 1.08000 * 125.89444 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47475 * 185.02357 * 6 5 4 33 33 H 1.09004 * 109.47144 * 65.02646 * 6 5 4 34 34 H 1.08992 * 109.47262 * 59.99901 * 7 6 5 35 35 H 1.08996 * 109.46950 * 299.99524 * 7 6 5 36 36 H 0.96999 * 119.99397 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47071 * 60.00380 * 11 10 8 38 38 H 1.08996 * 109.47302 * 299.99981 * 11 10 8 39 39 H 1.08996 * 109.67953 * 291.97993 * 14 12 11 40 40 H 1.08997 * 109.68020 * 52.52964 * 14 12 11 41 41 H 0.96999 * 119.99798 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.67924 * 290.78411 * 24 15 14 43 43 H 1.08994 * 109.68445 * 170.26625 * 24 15 14 44 44 H 1.08999 * 109.50820 * 67.60173 * 25 24 15 45 45 H 1.09001 * 109.51492 * 187.75712 * 25 24 15 46 46 H 1.08005 * 126.12888 * 179.73269 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5843 -0.6707 0.0015 6 6 4.7745 -1.5250 0.0018 7 6 5.6714 -1.1505 -1.1798 8 6 6.8960 -2.0289 -1.1791 9 8 7.0376 -2.8712 -0.3180 10 7 7.8338 -1.8786 -2.1353 11 6 9.0244 -2.7321 -2.1343 12 6 9.9206 -2.3585 -3.3167 13 1 10.2238 -1.3152 -3.2285 14 6 11.1646 -3.2545 -3.3208 15 7 11.9129 -3.0051 -4.5639 16 6 13.2549 -2.7341 -4.5377 17 1 13.6976 -2.2825 -3.6622 18 6 14.0464 -3.0400 -5.6363 19 7 13.6010 -3.8667 -6.5585 20 14 15.7436 -2.2783 -5.8058 21 1 16.7474 -3.1553 -5.1512 22 1 16.0786 -2.1309 -7.2450 23 1 15.7541 -0.9431 -5.1560 24 6 11.1751 -3.0553 -5.8361 25 6 9.9306 -2.1691 -5.7095 26 8 9.2020 -2.5454 -4.5384 27 6 2.3031 -1.0942 -0.0044 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5135 31 1 1.9951 2.1577 0.0004 32 1 4.4728 -2.5685 -0.0873 33 1 5.3229 -1.3838 0.9332 34 1 5.9732 -0.1070 -1.0905 35 1 5.1231 -1.2918 -2.1112 36 1 7.7202 -1.2052 -2.8242 37 1 8.7232 -3.7759 -2.2227 38 1 9.5727 -2.5897 -1.2031 39 1 11.7911 -3.0165 -2.4613 40 1 10.8633 -4.3011 -3.2775 41 1 14.1542 -4.0807 -7.3260 42 1 10.8748 -4.0819 -6.0459 43 1 11.8083 -2.6859 -6.6426 44 1 10.2338 -1.1252 -5.6299 45 1 9.2996 -2.2998 -6.5886 46 1 1.9723 -2.1223 -0.0094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753658129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = 15.015335 kcal Electronic energy + Delta-G solvation = -26340.080252 eV Core-core repulsion = 22460.222434 eV Total energy + Delta-G solvation = -3879.857818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48472 -39.86225 -38.51799 -35.15251 -34.68536 -34.32180 -32.07995 -31.68773 -31.02060 -30.34682 -27.71847 -26.81591 -25.57646 -24.19700 -23.21181 -21.88442 -21.10367 -20.73278 -20.26071 -19.60728 -17.71784 -17.02250 -16.57075 -16.21727 -16.00878 -15.85459 -15.11181 -14.97896 -14.62556 -14.43239 -14.16423 -13.89086 -13.76770 -13.58407 -13.33070 -13.19647 -13.13721 -12.97606 -12.75810 -12.43664 -12.36065 -12.20086 -11.66332 -11.60367 -11.16717 -10.89754 -10.78900 -10.75890 -10.46294 -10.33510 -10.10239 -10.02264 -9.73339 -9.67543 -9.13960 -9.07091 -8.60814 -8.58942 -6.80277 -5.89297 -3.33452 1.61192 2.16275 2.50754 2.52070 3.15182 3.30923 3.38107 3.39996 4.14084 4.20318 4.38635 4.42598 4.52845 4.66774 4.78400 4.97528 5.02316 5.07791 5.13933 5.28497 5.30216 5.40514 5.41061 5.45537 5.46302 5.56807 5.72333 5.74521 5.78724 5.85544 5.96800 6.08990 6.22577 6.30994 6.39155 6.41969 6.43279 6.69316 6.72862 7.04410 7.41885 7.43843 7.46454 7.65875 7.78436 8.10305 8.28409 9.06316 9.68817 10.25787 11.18934 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.001854 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.749900 B =15100.650337 C =15238.778715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.247 4.247 3 C 0.047 3.953 4 N -0.294 5.294 5 N -0.371 5.371 6 C 0.151 3.849 7 C -0.153 4.153 8 C 0.517 3.483 9 O -0.549 6.549 10 N -0.716 5.716 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.121 3.879 15 N -0.593 5.593 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 C 0.055 3.945 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.181 0.819 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.405 0.595 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.979 7.348 9.945 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.259 4.259 3 C -0.139 4.139 4 N -0.115 5.115 5 N -0.153 5.153 6 C 0.030 3.970 7 C -0.194 4.194 8 C 0.302 3.698 9 O -0.427 6.427 10 N -0.366 5.366 11 C 0.006 3.994 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.310 6.310 27 C -0.091 4.091 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.198 0.802 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.240 0.760 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.557 6.859 10.396 24.896 hybrid contribution 0.369 0.432 -0.675 0.882 sum -21.188 7.291 9.721 24.425 Atomic orbital electron populations 1.20039 0.89355 1.02061 1.01501 1.20161 0.97138 0.91909 1.16647 1.23809 0.89982 0.99820 1.00294 1.77333 1.21278 0.88924 1.24012 1.48676 1.05472 1.04736 1.56416 1.21433 0.83218 0.92652 0.99693 1.21868 0.95049 1.01970 1.00466 1.20278 0.84057 0.83995 0.81461 1.90723 1.78503 1.35981 1.37523 1.45919 1.21704 1.39054 1.29945 1.21457 0.85082 0.95300 0.97531 1.22817 0.92901 0.99767 0.84081 0.92322 1.21457 0.91526 0.96073 0.91528 1.44066 1.05295 1.82439 0.99924 1.19181 0.83129 1.34006 1.02303 0.91368 1.25061 0.97971 0.97570 0.98966 1.70025 1.37618 1.34265 1.12753 0.86254 0.83991 0.79192 0.77080 1.21243 1.21448 1.20432 1.21438 0.90420 0.96479 0.90294 1.23334 0.95535 0.98509 0.86433 1.87770 1.41474 1.87506 1.14231 1.22392 0.84158 1.00164 1.02352 0.92180 0.92236 0.91947 0.80200 0.87674 0.88724 0.87429 0.88285 0.75999 0.90618 0.90067 0.91752 0.95216 0.93455 0.95353 0.88786 0.94070 0.90018 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.37 36.00 0.37 -0.02 16 2 C -0.25 -2.01 6.10 -105.05 -0.64 -2.65 16 3 C 0.05 0.43 11.96 -17.37 -0.21 0.22 16 4 N -0.29 -3.27 12.42 30.62 0.38 -2.89 16 5 N -0.37 -3.61 3.68 -61.36 -0.23 -3.83 16 6 C 0.15 1.35 5.80 -4.04 -0.02 1.33 16 7 C -0.15 -1.38 5.88 -27.88 -0.16 -1.54 16 8 C 0.52 6.23 7.83 -10.98 -0.09 6.14 16 9 O -0.55 -8.37 15.98 5.55 0.09 -8.28 16 10 N -0.72 -8.74 5.45 -60.30 -0.33 -9.07 16 11 C 0.13 1.86 5.37 -4.04 -0.02 1.84 16 12 C 0.06 1.08 2.86 -26.58 -0.08 1.00 16 13 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 14 C 0.12 2.47 6.03 -3.49 -0.02 2.45 16 15 N -0.59 -14.58 3.05 -171.77 -0.52 -15.10 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 20 Si 0.91 21.18 29.58 -169.99 -5.03 16.16 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 25 C 0.04 0.74 6.99 37.31 0.26 1.00 16 26 O -0.39 -7.01 10.13 -35.23 -0.36 -7.37 16 27 C 0.06 0.45 11.36 -17.22 -0.20 0.26 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.11 0.82 8.03 -51.93 -0.42 0.40 16 33 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.41 4.36 8.35 -40.82 -0.34 4.02 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -32.79 381.96 -8.05 -40.84 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.38 Total: 2.62 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.05 Total: 6.22 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.08 Total: -55.94 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.27 Total: -15.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.79 -8.05 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753658129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.859 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds