Wall clock time and date at job start Tue Mar 31 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39807 * 120.08578 * 2 1 4 4 C 1.36027 * 119.08081 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.40224 * 179.97438 * 4 3 2 6 6 N 1.35867 * 119.19410 * 359.97438 * 4 3 2 7 7 C 1.46498 * 119.93616 * 179.72524 * 6 4 3 8 8 C 1.50698 * 109.47113 * 89.99899 * 7 6 4 9 9 O 1.21281 * 120.00048 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99905 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99995 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.46768 * 35.00208 * 11 10 8 13 13 C 1.53000 * 109.46816 * 275.00276 * 11 10 8 14 14 C 1.52998 * 109.46999 * 155.00213 * 11 10 8 15 15 N 1.46498 * 109.47251 * 305.00083 * 14 11 10 16 16 C 1.46501 * 120.00148 * 270.00163 * 15 14 11 17 17 C 1.36934 * 120.00173 * 89.99671 * 15 14 11 18 18 H 1.08009 * 119.99972 * 20.31030 * 17 15 14 19 19 C 1.38813 * 120.00376 * 200.30477 * 17 15 14 20 20 N 1.31618 * 119.99646 * 15.01831 * 19 17 15 21 21 Si 1.86798 * 120.00186 * 195.01937 * 19 17 15 22 22 H 1.48494 * 109.47189 * 85.00253 * 21 19 17 23 23 H 1.48504 * 109.47249 * 205.00210 * 21 19 17 24 24 H 1.48499 * 109.47026 * 325.00159 * 21 19 17 25 25 C 1.34617 * 120.12347 * 359.97438 * 6 4 3 26 26 O 1.21949 * 119.52249 * 180.02562 * 25 6 4 27 27 N 1.31761 * 120.08360 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47153 * 90.00497 * 1 2 3 29 29 H 1.08999 * 109.47330 * 210.00373 * 1 2 3 30 30 H 1.09004 * 109.47124 * 330.00196 * 1 2 3 31 31 H 1.08002 * 120.45801 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47125 * 270.02222 * 5 4 3 33 33 H 1.09003 * 109.47473 * 30.02208 * 5 4 3 34 34 H 1.09000 * 109.47049 * 150.02195 * 5 4 3 35 35 H 1.09002 * 109.46651 * 209.99739 * 7 6 4 36 36 H 1.08999 * 109.47154 * 329.99598 * 7 6 4 37 37 H 0.97003 * 120.00157 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47384 * 299.99209 * 13 11 10 39 39 H 1.08992 * 109.47464 * 60.00079 * 13 11 10 40 40 H 1.09009 * 109.46646 * 179.97438 * 13 11 10 41 41 H 1.09007 * 109.47119 * 64.99920 * 14 11 10 42 42 H 1.08999 * 109.47388 * 184.99987 * 14 11 10 43 43 H 1.09003 * 109.46999 * 95.09867 * 16 15 14 44 44 H 1.08993 * 109.47403 * 215.10162 * 16 15 14 45 45 H 1.09001 * 109.47093 * 335.10456 * 16 15 14 46 46 H 0.97009 * 119.99638 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1859 0.0005 5 6 4.3532 2.4721 0.0000 6 7 4.2097 -0.0117 0.0016 7 6 5.6740 -0.0563 -0.0039 8 6 6.1815 -0.0675 1.4150 9 8 5.3973 -0.0402 2.3398 10 7 7.5069 -0.1077 1.6562 11 6 8.0004 -0.1179 3.0357 12 1 7.3123 -0.6840 3.6634 13 6 8.0983 1.3187 3.5529 14 6 9.3835 -0.7705 3.0776 15 7 9.3135 -2.1028 2.4724 16 6 9.0078 -3.2698 3.3035 17 6 9.5338 -2.2573 1.1297 18 1 10.0673 -1.4966 0.5789 19 6 9.0714 -3.3915 0.4764 20 7 8.1809 -4.1679 1.0565 21 14 9.7131 -3.8158 -1.2258 22 1 10.9812 -4.5783 -1.1009 23 1 8.7077 -4.6411 -1.9423 24 1 9.9604 -2.5652 -1.9874 25 6 3.5025 -1.1572 0.0026 26 8 4.0899 -2.2259 0.0040 27 7 2.1674 -1.1401 0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6767 2.1501 -0.0004 32 1 4.5426 2.7817 -1.0279 33 1 3.7829 3.2462 0.5134 34 1 5.3021 2.3186 0.5139 35 1 6.0079 -0.9586 -0.5164 36 1 6.0623 0.8206 -0.5219 37 1 8.1341 -0.1291 0.9166 38 1 8.7864 1.8848 2.9252 39 1 7.1129 1.7836 3.5230 40 1 8.4650 1.3110 4.5794 41 1 10.0922 -0.1560 2.5224 42 1 9.7125 -0.8587 4.1131 43 1 7.9391 -3.4792 3.2568 44 1 9.5634 -4.1327 2.9367 45 1 9.2932 -3.0657 4.3355 46 1 7.8575 -4.9603 0.5998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:03 Heat of formation + Delta-G solvation = 2.865071 kcal Electronic energy + Delta-G solvation = -28789.063808 eV Core-core repulsion = 24908.679115 eV Total energy + Delta-G solvation = -3880.384693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75595 -39.16904 -37.13277 -36.59109 -35.77282 -33.99815 -32.24845 -31.55655 -30.66319 -30.03046 -28.54282 -26.73589 -26.16586 -25.60107 -23.00025 -22.34227 -21.66458 -20.50922 -19.79292 -18.39131 -17.40417 -17.21355 -16.59449 -15.89745 -15.59216 -15.34074 -14.93109 -14.66132 -14.15726 -13.84573 -13.79166 -13.69227 -13.63303 -13.38196 -13.20415 -13.06610 -12.87962 -12.62115 -12.32468 -12.18768 -12.12677 -11.79618 -11.42202 -11.34420 -11.31785 -10.83244 -10.70794 -10.69567 -10.51989 -10.43751 -10.26818 -10.03458 -9.81250 -9.44449 -9.38979 -8.54752 -8.40211 -8.27366 -6.78882 -5.70789 -3.16427 0.68539 1.77296 2.43973 3.03757 3.34871 3.41765 3.47817 3.67853 3.99605 4.08872 4.18347 4.48118 4.56058 4.76537 5.01175 5.03350 5.11369 5.12540 5.26214 5.33605 5.39220 5.43949 5.48353 5.49652 5.58480 5.60824 5.80057 5.80227 5.91718 5.92974 6.12308 6.17961 6.31432 6.40367 6.42909 6.59313 6.73830 6.84759 7.15288 7.38986 7.71168 7.82387 8.02228 8.11548 8.37358 8.42900 8.74561 9.21344 9.86363 10.35797 11.33078 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.004542 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.384389 B = 6163.710578 C = 7246.953315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.266 3.734 3 C -0.304 4.304 4 C 0.226 3.774 5 C -0.132 4.132 6 N -0.493 5.493 7 C 0.067 3.933 8 C 0.508 3.492 9 O -0.549 6.549 10 N -0.679 5.679 11 C 0.118 3.882 12 H 0.076 0.924 13 C -0.158 4.158 14 C 0.143 3.857 15 N -0.597 5.597 16 C 0.163 3.837 17 C -0.270 4.270 18 H 0.067 0.933 19 C 0.011 3.989 20 N -0.888 5.888 21 Si 0.896 3.104 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.632 3.368 26 O -0.509 6.509 27 N -0.551 5.551 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.405 0.595 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.029 0.971 44 H 0.043 0.957 45 H -0.004 1.004 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 18.452 -2.566 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 C -0.330 4.330 4 C 0.107 3.893 5 C -0.189 4.189 6 N -0.207 5.207 7 C -0.060 4.060 8 C 0.292 3.708 9 O -0.428 6.428 10 N -0.329 5.329 11 C 0.010 3.990 12 H 0.094 0.906 13 C -0.217 4.217 14 C 0.014 3.986 15 N -0.319 5.319 16 C 0.018 3.982 17 C -0.399 4.399 18 H 0.084 0.916 19 C -0.190 4.190 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.334 3.666 26 O -0.381 6.381 27 N -0.286 5.286 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.171 0.829 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.241 0.759 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.015 0.985 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.924 16.517 -1.949 18.875 hybrid contribution 0.942 0.310 -1.279 1.618 sum -7.982 16.827 -3.228 18.902 Atomic orbital electron populations 1.20888 0.87921 1.04335 1.03852 1.22129 0.97588 0.88371 0.81586 1.21104 0.91820 1.00397 1.19709 1.21117 0.93421 0.87805 0.86999 1.21195 1.00903 0.92371 1.04388 1.46111 1.08624 1.07156 1.58851 1.21890 0.78486 1.07467 0.98120 1.20228 0.83572 0.76959 0.90049 1.90677 1.55796 1.51012 1.45288 1.45613 1.05656 1.71954 1.09657 1.21913 0.99781 0.94891 0.82430 0.90587 1.22146 1.01231 0.97526 1.00793 1.21172 0.92489 0.87721 0.97169 1.43884 1.82340 1.00187 1.05513 1.20798 0.99541 0.89201 0.88644 1.18995 1.30502 1.05887 0.84537 0.91573 1.24975 0.97073 0.99311 0.97646 1.70068 1.28869 1.16221 1.37879 0.86436 0.78191 0.78339 0.84437 1.21463 1.21703 1.20625 1.18150 0.85189 0.83460 0.79838 1.91121 1.68386 1.27109 1.51472 1.69798 1.05605 1.28010 1.25175 0.89168 0.89616 0.89818 0.82920 0.88514 0.88346 0.89881 0.84592 0.86644 0.75884 0.92930 0.93163 0.92147 0.93301 0.92948 0.95275 0.93844 0.98503 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.20 36.00 0.37 -0.57 16 2 C 0.27 3.51 6.84 -82.04 -0.56 2.95 16 3 C -0.30 -3.28 9.41 -39.79 -0.37 -3.65 16 4 C 0.23 2.77 6.68 -81.60 -0.55 2.23 16 5 C -0.13 -0.99 9.13 36.01 0.33 -0.66 16 6 N -0.49 -8.36 2.08 -118.41 -0.25 -8.60 16 7 C 0.07 1.10 5.20 -5.20 -0.03 1.07 16 8 C 0.51 9.88 7.38 -10.99 -0.08 9.80 16 9 O -0.55 -12.55 16.09 5.56 0.09 -12.46 16 10 N -0.68 -12.57 4.49 -53.81 -0.24 -12.81 16 11 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 12 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 13 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 14 C 0.14 2.72 5.36 -4.04 -0.02 2.70 16 15 N -0.60 -14.37 2.82 -181.12 -0.51 -14.88 16 16 C 0.16 4.11 9.02 59.85 0.54 4.65 16 17 C -0.27 -6.89 8.02 -15.06 -0.12 -7.02 16 18 H 0.07 1.60 7.86 -52.48 -0.41 1.18 16 19 C 0.01 0.29 5.06 -17.43 -0.09 0.20 16 20 N -0.89 -26.50 10.67 55.49 0.59 -25.91 16 21 Si 0.90 21.55 29.58 -169.99 -5.03 16.53 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.63 13.58 8.35 -88.17 -0.74 12.84 16 26 O -0.51 -13.60 16.73 4.96 0.08 -13.52 16 27 N -0.55 -10.44 10.41 -12.80 -0.13 -10.57 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.08 0.72 6.31 -51.93 -0.33 0.39 16 35 H 0.14 2.58 7.39 -51.93 -0.38 2.20 16 36 H 0.12 1.25 6.59 -51.93 -0.34 0.91 16 37 H 0.41 7.19 7.40 -40.82 -0.30 6.89 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 42 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 43 H 0.03 0.83 7.40 -51.93 -0.38 0.45 16 44 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 45 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -39.37 380.06 -7.92 -47.28 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.09 Total: 4.60 kcal Atomic # 6 Polarization: 25.78 SS G_CDS: -1.16 Total: 24.62 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -0.54 Total: -72.78 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.17 Total: -25.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.37 -7.92 -47.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.149 kcal (2) G-P(sol) polarization free energy of solvation -39.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds