Wall clock time and date at job start Tue Mar 31 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39805 * 120.08218 * 2 1 4 4 C 1.36026 * 119.08240 * 180.25285 * 3 2 1 5 5 C 1.50698 * 120.40575 * 180.02562 * 4 3 2 6 6 N 1.35869 * 119.18890 * 0.02562 * 4 3 2 7 7 C 1.46495 * 119.93484 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47081 * 269.90896 * 7 6 4 9 9 O 1.21284 * 119.99816 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99995 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47532 * 325.00840 * 11 10 8 13 13 C 1.53002 * 109.46678 * 85.00241 * 11 10 8 14 14 C 1.53001 * 109.47507 * 205.00098 * 11 10 8 15 15 N 1.46493 * 109.46904 * 55.00299 * 14 11 10 16 16 C 1.46507 * 120.00247 * 269.99994 * 15 14 11 17 17 C 1.36934 * 120.00157 * 89.99961 * 15 14 11 18 18 H 1.07998 * 119.99688 * 23.10378 * 17 15 14 19 19 C 1.38811 * 120.00109 * 203.09582 * 17 15 14 20 20 N 1.31613 * 120.00156 * 14.09059 * 19 17 15 21 21 Si 1.86808 * 119.99844 * 194.08486 * 19 17 15 22 22 H 1.48502 * 109.47203 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46541 * 120.00175 * 21 19 17 24 24 H 1.48495 * 109.47103 * 240.00073 * 21 19 17 25 25 C 1.34622 * 120.12789 * 0.02562 * 6 4 3 26 26 O 1.21949 * 119.52304 * 179.97438 * 25 6 4 27 27 N 1.31757 * 120.08501 * 180.27380 * 2 1 3 28 28 H 1.09006 * 109.47241 * 179.72805 * 1 2 3 29 29 H 1.08995 * 109.47135 * 299.72476 * 1 2 3 30 30 H 1.09003 * 109.47143 * 59.72703 * 1 2 3 31 31 H 1.08000 * 120.46030 * 0.25228 * 3 2 1 32 32 H 1.08996 * 109.47018 * 241.23982 * 5 4 3 33 33 H 1.08995 * 109.47204 * 1.24354 * 5 4 3 34 34 H 1.09003 * 109.46693 * 121.24280 * 5 4 3 35 35 H 1.09001 * 109.47590 * 29.91011 * 7 6 4 36 36 H 1.09002 * 109.47191 * 149.91000 * 7 6 4 37 37 H 0.96991 * 120.00305 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47555 * 60.00120 * 13 11 10 39 39 H 1.09005 * 109.47374 * 180.02562 * 13 11 10 40 40 H 1.08997 * 109.47134 * 300.00036 * 13 11 10 41 41 H 1.08999 * 109.47299 * 175.00646 * 14 11 10 42 42 H 1.09007 * 109.46683 * 295.00549 * 14 11 10 43 43 H 1.09000 * 109.47185 * 95.19041 * 16 15 14 44 44 H 1.08994 * 109.47552 * 215.19430 * 16 15 14 45 45 H 1.09005 * 109.46848 * 335.19640 * 16 15 14 46 46 H 0.97005 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5678 1.1860 -0.0052 5 6 4.3531 2.4722 -0.0048 6 7 4.2096 -0.0115 -0.0109 7 6 5.6739 -0.0561 -0.0160 8 6 6.1711 -0.0696 -1.4386 9 8 5.3801 -0.0440 -2.3577 10 7 7.4946 -0.1102 -1.6895 11 6 7.9779 -0.1239 -3.0725 12 1 7.2853 -0.6915 -3.6939 13 6 8.0718 1.3115 -3.5940 14 6 9.3609 -0.7764 -3.1231 15 7 9.2955 -2.1071 -2.5141 16 6 9.5418 -2.2689 -1.0790 17 6 9.0041 -3.1999 -3.2862 18 1 9.1855 -3.1729 -4.3505 19 6 8.4757 -4.3423 -2.7008 20 7 7.9974 -4.2930 -1.4757 21 14 8.4434 -5.9496 -3.6522 22 1 9.0368 -5.7407 -4.9974 23 1 9.2290 -6.9746 -2.9188 24 1 7.0395 -6.4114 -3.7962 25 6 3.5026 -1.1571 -0.0117 26 8 4.0900 -2.2258 -0.0173 27 7 2.1675 -1.1401 -0.0054 28 1 -0.3634 -1.0277 -0.0049 29 1 -0.3633 0.5095 0.8924 30 1 -0.3633 0.5181 -0.8875 31 1 1.6767 2.1501 0.0041 32 1 4.9610 2.5271 -0.9079 33 1 3.6657 3.3176 0.0224 34 1 5.0007 2.5022 0.8715 35 1 6.0660 0.8217 0.4976 36 1 6.0118 -0.9575 0.4955 37 1 8.1272 -0.1311 -0.9546 38 1 8.7644 1.8793 -2.9727 39 1 8.4309 1.3014 -4.6231 40 1 7.0866 1.7763 -3.5580 41 1 9.6821 -0.8670 -4.1607 42 1 10.0735 -0.1603 -2.5746 43 1 8.5917 -2.2663 -0.5447 44 1 10.0552 -3.2140 -0.9027 45 1 10.1617 -1.4465 -0.7218 46 1 7.6278 -5.0912 -1.0668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:06 Heat of formation + Delta-G solvation = 2.844540 kcal Electronic energy + Delta-G solvation = -28650.226024 eV Core-core repulsion = 24769.840441 eV Total energy + Delta-G solvation = -3880.385583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79314 -39.25536 -37.16957 -36.62363 -35.81033 -34.02756 -32.30637 -31.52028 -30.67476 -30.12469 -28.57559 -26.80600 -26.20223 -25.55819 -23.04192 -22.39747 -21.65484 -20.47895 -19.98874 -18.41385 -17.38220 -17.32059 -16.70961 -15.93002 -15.63507 -15.34203 -14.93693 -14.63814 -14.18616 -13.95333 -13.76463 -13.72815 -13.65292 -13.38568 -13.27885 -13.12993 -12.91084 -12.61062 -12.34647 -12.24224 -12.15539 -11.84291 -11.47547 -11.39072 -11.10671 -10.83973 -10.74822 -10.73183 -10.55546 -10.54004 -10.22192 -9.91453 -9.81139 -9.49295 -9.45780 -8.61833 -8.41277 -8.31131 -6.71183 -5.66621 -3.12805 0.65437 1.74125 2.38832 2.95512 3.44760 3.51450 3.55247 3.58005 3.95654 4.04684 4.15810 4.50772 4.57131 4.67446 4.93088 4.98031 5.06876 5.09469 5.23249 5.33831 5.35623 5.40538 5.41970 5.50006 5.51246 5.64119 5.77415 5.78271 5.89276 5.94863 6.05680 6.17655 6.28277 6.40435 6.48945 6.55302 6.59920 6.84209 7.07019 7.29674 7.65353 7.86953 7.93527 8.00567 8.39509 8.44106 8.63069 9.27484 9.90230 10.37421 11.38621 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.004256 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.342844 B = 6577.862843 C = 7903.093998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.266 3.734 3 C -0.303 4.303 4 C 0.224 3.776 5 C -0.131 4.131 6 N -0.494 5.494 7 C 0.068 3.932 8 C 0.509 3.491 9 O -0.540 6.540 10 N -0.690 5.690 11 C 0.117 3.883 12 H 0.085 0.915 13 C -0.157 4.157 14 C 0.144 3.856 15 N -0.596 5.596 16 C 0.160 3.840 17 C -0.267 4.267 18 H 0.067 0.933 19 C 0.010 3.990 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.632 3.368 26 O -0.507 6.507 27 N -0.550 5.550 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.041 0.959 45 H -0.004 1.004 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 20.254 6.622 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 C -0.329 4.329 4 C 0.105 3.895 5 C -0.188 4.188 6 N -0.209 5.209 7 C -0.059 4.059 8 C 0.293 3.707 9 O -0.417 6.417 10 N -0.340 5.340 11 C 0.009 3.991 12 H 0.103 0.897 13 C -0.216 4.216 14 C 0.015 3.985 15 N -0.318 5.318 16 C 0.015 3.985 17 C -0.396 4.396 18 H 0.085 0.915 19 C -0.190 4.190 20 N -0.538 5.538 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.334 3.666 26 O -0.379 6.379 27 N -0.284 5.284 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.171 0.829 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.855 18.358 6.061 20.868 hybrid contribution 0.532 -0.263 -0.132 0.608 sum -7.323 18.095 5.928 20.401 Atomic orbital electron populations 1.20915 0.87899 1.04943 1.03438 1.22142 0.97630 0.88347 0.81535 1.21112 0.91804 1.00453 1.19516 1.21097 0.93432 0.87754 0.87232 1.21186 1.01074 0.92240 1.04295 1.46089 1.08503 1.07181 1.59162 1.21872 0.78818 1.07307 0.97877 1.20251 0.83459 0.76850 0.90160 1.90700 1.55058 1.50114 1.45829 1.45667 1.05717 1.73064 1.09557 1.21945 1.00430 0.94854 0.81860 0.89670 1.22141 1.01119 0.97427 1.00943 1.21192 0.91973 0.87059 0.98265 1.43882 1.81288 1.01169 1.05422 1.20851 0.97398 0.96515 0.83725 1.19136 1.37314 0.91301 0.91857 0.91472 1.25007 0.97997 0.99147 0.96839 1.70013 1.41794 1.27867 1.14144 0.86253 0.77339 0.84114 0.79223 1.20364 1.21622 1.21682 1.18170 0.85219 0.83441 0.79801 1.91127 1.68370 1.27075 1.51339 1.69832 1.05582 1.27987 1.24973 0.89740 0.89332 0.89272 0.82897 0.88990 0.88498 0.89229 0.86660 0.84723 0.76987 0.93123 0.91978 0.93207 0.92262 0.94014 0.94986 0.94031 0.98601 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.19 36.01 0.37 -0.57 16 2 C 0.27 3.45 6.84 -82.04 -0.56 2.89 16 3 C -0.30 -3.16 9.41 -39.79 -0.37 -3.53 16 4 C 0.22 2.62 6.68 -81.60 -0.55 2.08 16 5 C -0.13 -0.90 8.83 36.00 0.32 -0.58 16 6 N -0.49 -8.04 2.08 -118.41 -0.25 -8.28 16 7 C 0.07 1.03 5.43 -5.19 -0.03 1.00 16 8 C 0.51 9.54 7.86 -10.99 -0.09 9.45 16 9 O -0.54 -12.28 16.09 5.55 0.09 -12.19 16 10 N -0.69 -12.10 4.42 -53.80 -0.24 -12.34 16 11 C 0.12 2.15 2.88 -67.93 -0.20 1.96 16 12 H 0.09 1.99 7.58 -51.93 -0.39 1.59 16 13 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 14 C 0.14 2.76 5.33 -4.04 -0.02 2.73 16 15 N -0.60 -14.49 2.78 -181.12 -0.50 -14.99 16 16 C 0.16 3.72 7.60 59.85 0.46 4.18 16 17 C -0.27 -7.47 9.65 -15.06 -0.15 -7.62 16 18 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 19 C 0.01 0.29 5.08 -17.43 -0.09 0.20 16 20 N -0.89 -27.28 10.78 55.49 0.60 -26.68 16 21 Si 0.90 23.23 29.58 -169.99 -5.03 18.20 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 25 C 0.63 13.30 8.34 -88.17 -0.74 12.57 16 26 O -0.51 -13.34 16.74 4.96 0.08 -13.26 16 27 N -0.55 -10.28 10.39 -12.80 -0.13 -10.41 16 28 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.15 0.94 7.96 -52.49 -0.42 0.52 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.40 7.89 -51.93 -0.41 -0.01 16 34 H 0.09 0.43 7.38 -51.93 -0.38 0.05 16 35 H 0.12 1.07 6.47 -51.93 -0.34 0.74 16 36 H 0.13 2.31 7.39 -51.93 -0.38 1.93 16 37 H 0.40 6.16 7.18 -40.82 -0.29 5.87 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 42 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 43 H 0.03 0.80 6.91 -51.93 -0.36 0.44 16 44 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 45 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -41.31 380.77 -8.02 -49.34 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.10 Total: 2.00 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: -1.29 Total: 22.88 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -0.52 Total: -72.71 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.17 Total: -25.45 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.03 Total: 18.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.31 -8.02 -49.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.182 kcal (2) G-P(sol) polarization free energy of solvation -41.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds