Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45195 * 109.47503 * 2 1 4 4 C 1.34808 * 117.00366 * 180.02562 * 3 2 1 5 5 O 1.21567 * 119.99596 * 0.02562 * 4 3 2 6 6 C 1.47018 * 120.00296 * 179.97438 * 4 3 2 7 7 C 1.37949 * 120.52847 * 0.02562 * 6 4 3 8 8 N 1.35021 * 122.05236 * 180.02562 * 7 6 4 9 9 C 1.36774 * 118.68233 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00115 * 147.76441 * 9 8 7 11 11 C 1.39175 * 119.99355 * 327.75722 * 9 8 7 12 12 N 1.31205 * 120.00632 * 343.77262 * 11 9 8 13 13 Si 1.86802 * 119.99332 * 163.77351 * 11 9 8 14 14 H 1.48491 * 109.47505 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47011 * 120.00275 * 13 11 9 16 16 H 1.48501 * 109.46986 * 239.99792 * 13 11 9 17 17 C 1.38127 * 122.64404 * 0.02562 * 8 7 6 18 18 C 1.39123 * 120.43496 * 180.02562 * 17 8 7 19 19 C 1.38044 * 120.00410 * 179.97438 * 18 17 8 20 20 F 1.35108 * 119.69018 * 179.97438 * 19 18 17 21 21 C 1.39213 * 120.62447 * 0.25021 * 19 18 17 22 22 F 1.35101 * 119.89958 * 179.70416 * 21 19 18 23 23 C 1.37881 * 120.19936 * 359.42088 * 21 19 18 24 24 C 1.39545 * 119.63911 * 0.62210 * 23 21 19 25 25 C 1.47255 * 120.52730 * 180.02562 * 6 4 3 26 26 O 1.21869 * 121.32433 * 359.97438 * 25 6 4 27 27 H 1.09000 * 109.46811 * 299.99916 * 1 2 3 28 28 H 1.09003 * 109.47124 * 59.99873 * 1 2 3 29 29 H 1.08994 * 109.47811 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46604 * 239.99701 * 2 1 3 31 31 H 1.08994 * 109.47243 * 120.00254 * 2 1 3 32 32 H 1.07995 * 118.97344 * 0.04678 * 7 6 4 33 33 H 0.96995 * 120.00316 * 180.02562 * 12 11 9 34 34 H 1.08008 * 120.00164 * 359.97126 * 18 17 8 35 35 H 1.07997 * 120.17518 * 180.27474 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3505 1.5455 -0.0005 5 8 4.0910 0.5814 -0.0015 6 6 3.9125 2.9040 -0.0011 7 6 3.0824 4.0058 -0.0006 8 7 3.5651 5.2667 -0.0017 9 6 2.6793 6.3088 -0.0016 10 1 2.9326 7.2329 0.4966 11 6 1.4514 6.1782 -0.6437 12 7 1.2617 5.2075 -1.5058 13 14 0.0734 7.3853 -0.2782 14 1 0.5380 8.3786 0.7230 15 1 -0.3151 8.0863 -1.5284 16 1 -1.0984 6.6500 0.2616 17 6 4.9177 5.5467 -0.0038 18 6 5.3647 6.8641 -0.0043 19 6 6.7186 7.1337 -0.0059 20 9 7.1457 8.4156 -0.0069 21 6 7.6481 6.0974 -0.0124 22 9 8.9696 6.3780 -0.0199 23 6 7.2240 4.7854 -0.0051 24 6 5.8577 4.5018 -0.0045 25 6 5.3705 3.1103 -0.0023 26 8 6.1437 2.1683 -0.0023 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0130 3.8550 0.0010 33 1 0.4061 5.1167 -1.9535 34 1 4.6525 7.6761 -0.0034 35 1 7.9454 3.9817 -0.0057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000340504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -172.093989 kcal Electronic energy + Delta-G solvation = -26980.845658 eV Core-core repulsion = 22580.109054 eV Total energy + Delta-G solvation = -4400.736605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.18365 -48.24236 -40.61530 -39.32985 -37.50823 -36.74674 -35.52292 -33.31737 -31.96356 -31.19895 -29.94955 -29.38568 -25.91133 -24.38744 -23.64396 -22.73925 -21.66976 -20.98074 -18.79883 -18.61772 -18.10914 -16.84996 -16.62957 -16.13699 -16.01335 -15.89915 -15.70234 -15.31774 -15.08262 -14.68728 -14.43189 -14.29936 -14.24399 -13.85398 -13.46215 -13.35502 -12.84078 -12.81763 -12.70877 -12.44090 -12.24094 -12.03474 -11.61942 -11.54531 -11.41579 -11.23647 -11.09563 -10.75742 -10.71034 -9.99912 -9.75184 -9.55713 -8.89427 -8.75091 -8.46218 -7.53906 -7.19709 -4.98450 0.88773 1.01689 2.27995 2.76909 2.79251 2.86859 2.95220 3.27398 3.37228 3.60490 3.78195 4.11364 4.12161 4.58907 4.61033 4.74022 4.96410 5.19753 5.24418 5.31326 5.41272 5.53413 5.65866 5.68829 5.95916 6.00608 6.04863 6.09182 6.12729 6.15218 6.25629 6.46783 6.63891 6.79270 6.91806 7.14551 7.18851 7.78398 8.15939 8.40567 8.65236 8.73531 9.73326 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.005801 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.768076 B = 4825.571216 C = 7514.098698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.362 6.362 4 C 0.533 3.467 5 O -0.517 6.517 6 C -0.381 4.381 7 C 0.264 3.736 8 N -0.288 5.288 9 C -0.386 4.386 10 H 0.122 0.878 11 C 0.056 3.944 12 N -0.828 5.828 13 Si 0.942 3.058 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.267 1.267 17 C 0.187 3.813 18 C -0.157 4.157 19 C 0.112 3.888 20 F -0.130 7.130 21 C 0.008 3.992 22 F -0.136 7.136 23 C -0.039 4.039 24 C -0.179 4.179 25 C 0.434 3.566 26 O -0.493 6.493 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.181 0.819 33 H 0.293 0.707 34 H 0.161 0.839 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 1.921 2.271 4.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 O -0.280 6.280 4 C 0.381 3.619 5 O -0.407 6.407 6 C -0.389 4.389 7 C 0.122 3.878 8 N 0.045 4.955 9 C -0.512 4.512 10 H 0.140 0.860 11 C -0.158 4.158 12 N -0.457 5.457 13 Si 0.765 3.235 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.192 1.192 17 C 0.082 3.918 18 C -0.178 4.178 19 C 0.091 3.909 20 F -0.108 7.108 21 C -0.013 4.013 22 F -0.115 7.115 23 C -0.059 4.059 24 C -0.184 4.184 25 C 0.321 3.679 26 O -0.375 6.375 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.198 0.802 33 H 0.105 0.895 34 H 0.179 0.821 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.570 1.270 2.107 3.558 hybrid contribution -0.439 0.776 -0.161 0.906 sum -3.009 2.046 1.946 4.126 Atomic orbital electron populations 1.21775 0.93294 1.02208 1.03464 1.22805 0.94697 0.81391 1.01976 1.86588 1.24968 1.30896 1.85579 1.20186 0.79556 0.89163 0.72983 1.90815 1.59935 1.42020 1.47897 1.20469 0.94111 0.89643 1.34726 1.22596 1.00590 0.81564 0.83095 1.39433 1.02434 1.06077 1.47555 1.20144 0.96413 0.96378 1.38263 0.86026 1.25712 0.99543 0.98193 0.92365 1.69723 1.26203 1.30523 1.19261 0.85601 0.79133 0.79392 0.79354 1.18220 1.19602 1.19204 1.18028 0.84640 0.92439 0.96695 1.20650 0.93201 0.96961 1.06944 1.17456 0.91909 0.77953 1.03610 1.91505 1.90420 1.35082 1.93815 1.17299 0.77577 0.92774 1.13622 1.91476 1.30854 1.94310 1.94830 1.20817 0.95512 0.94383 0.95163 1.20085 0.92302 0.95241 1.10756 1.18963 0.87307 0.86468 0.75192 1.90663 1.58835 1.43724 1.44328 0.91690 0.91518 0.90889 0.91824 0.91881 0.80250 0.89510 0.82118 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 37.16 0.38 -1.37 16 2 C 0.07 1.01 6.20 37.16 0.23 1.24 16 3 O -0.36 -7.04 9.43 -40.79 -0.38 -7.42 16 4 C 0.53 12.03 7.89 34.29 0.27 12.30 16 5 O -0.52 -12.88 15.34 -26.15 -0.40 -13.28 16 6 C -0.38 -8.61 6.04 -102.78 -0.62 -9.23 16 7 C 0.26 5.65 8.58 -16.25 -0.14 5.51 16 8 N -0.29 -5.99 2.78 -59.31 -0.17 -6.15 16 9 C -0.39 -7.71 8.56 -15.00 -0.13 -7.84 16 10 H 0.12 2.22 6.44 -52.49 -0.34 1.88 16 11 C 0.06 1.10 4.94 -17.47 -0.09 1.01 16 12 N -0.83 -17.54 11.28 55.51 0.63 -16.92 16 13 Si 0.94 15.23 29.58 -169.99 -5.03 10.20 16 14 H -0.26 -4.08 7.11 56.52 0.40 -3.68 16 15 H -0.27 -4.47 7.11 56.52 0.40 -4.07 16 16 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 17 C 0.19 3.69 6.50 -83.83 -0.55 3.14 16 18 C -0.16 -2.72 9.17 -39.32 -0.36 -3.08 16 19 C 0.11 1.88 7.29 -39.29 -0.29 1.60 16 20 F -0.13 -2.10 17.16 2.25 0.04 -2.06 16 21 C 0.01 0.14 7.30 -39.35 -0.29 -0.15 16 22 F -0.14 -2.28 17.17 2.25 0.04 -2.24 16 23 C -0.04 -0.71 9.62 -39.23 -0.38 -1.09 16 24 C -0.18 -3.64 5.89 -104.80 -0.62 -4.26 16 25 C 0.43 10.02 7.14 -32.18 -0.23 9.79 16 26 O -0.49 -12.54 15.82 -15.15 -0.24 -12.78 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.18 3.84 5.70 -52.49 -0.30 3.54 16 33 H 0.29 5.74 8.30 -40.82 -0.34 5.40 16 34 H 0.16 2.56 6.24 -52.48 -0.33 2.23 16 35 H 0.15 2.63 7.77 -52.49 -0.41 2.22 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -26.56 320.47 -6.10 -32.66 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -2.62 Total: 5.57 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.80 Total: 7.59 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.46 Total: -23.07 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.03 Total: -33.48 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.08 Total: -4.31 kcal Atomic # 14 Polarization: 15.23 SS G_CDS: -5.03 Total: 10.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.56 -6.10 -32.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000340504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.432 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds