Wall clock time and date at job start Tue Mar 31 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31495 * 1 3 3 Si 1.86806 * 120.00282 * 2 1 4 4 H 1.48492 * 109.47097 * 270.00306 * 3 2 1 5 5 H 1.48501 * 109.46612 * 30.00172 * 3 2 1 6 6 H 1.48492 * 109.47155 * 149.99944 * 3 2 1 7 7 C 1.38807 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99834 * 161.63604 * 7 2 1 9 9 N 1.37124 * 119.99934 * 341.63465 * 7 2 1 10 10 C 1.38659 * 124.78909 * 150.32743 * 9 7 2 11 11 C 1.39123 * 132.14245 * 0.03758 * 10 9 7 12 12 C 1.37926 * 120.07972 * 179.71692 * 11 10 9 13 13 C 1.38695 * 120.57538 * 0.51322 * 12 11 10 14 14 Cl 1.73592 * 119.91659 * 179.76014 * 13 12 11 15 15 C 1.38081 * 120.16389 * 359.48364 * 13 12 11 16 16 C 1.39174 * 119.75975 * 0.25296 * 15 13 12 17 17 C 1.47660 * 133.29795 * 180.02562 * 16 15 13 18 18 N 1.31869 * 133.01334 * 359.96185 * 17 16 15 19 19 C 1.33645 * 119.67687 * 179.91794 * 18 17 16 20 20 C 1.40657 * 120.86464 * 180.11364 * 19 18 17 21 21 C 1.36061 * 119.73590 * 180.02562 * 20 19 18 22 22 C 1.39421 * 120.94105 * 359.95629 * 21 20 19 23 23 C 1.36058 * 121.00680 * 0.02562 * 22 21 20 24 24 C 1.40673 * 119.76878 * 0.02643 * 23 22 21 25 25 N 1.33670 * 120.82162 * 180.02562 * 24 23 22 26 26 C 1.32064 * 119.91656 * 179.97438 * 25 24 23 27 27 H 0.97008 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.96372 * 359.96959 * 11 10 9 29 29 H 1.08006 * 119.71382 * 180.24973 * 12 11 10 30 30 H 1.07997 * 120.11712 * 180.22967 * 15 13 12 31 31 H 1.07997 * 120.13337 * 359.97438 * 20 19 18 32 32 H 1.07996 * 119.53407 * 179.97438 * 21 20 19 33 33 H 1.07999 * 119.49595 * 180.02562 * 22 21 20 34 34 H 1.07999 * 120.11790 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5465 1.4401 0.7000 7 6 2.0090 -1.2021 -0.0005 8 1 3.0478 -1.2258 -0.2952 9 7 1.3757 -2.3596 0.3731 10 6 1.6916 -3.6232 -0.1025 11 6 2.6480 -4.0668 -1.0102 12 6 2.7513 -5.4104 -1.3042 13 6 1.9002 -6.3301 -0.7097 14 17 2.0412 -8.0164 -1.0970 15 6 0.9449 -5.9085 0.1937 16 6 0.8351 -4.5558 0.5021 17 6 -0.0525 -3.7908 1.4006 18 7 -1.0353 -4.1417 2.2069 19 6 -1.6745 -3.2071 2.9167 20 6 -2.7247 -3.5536 3.7859 21 6 -3.3600 -2.5833 4.4972 22 6 -2.9850 -1.2457 4.3787 23 6 -1.9739 -0.8722 3.5485 24 6 -1.2929 -1.8457 2.7952 25 7 -0.2961 -1.5023 1.9735 26 6 0.3313 -2.4311 1.2751 27 1 -0.4850 0.8401 0.0004 28 1 3.3131 -3.3588 -1.4822 29 1 3.4986 -5.7487 -2.0068 30 1 0.2851 -6.6258 0.6590 31 1 -3.0260 -4.5857 3.8877 32 1 -4.1662 -2.8530 5.1633 33 1 -3.5051 -0.4946 4.9547 34 1 -1.6955 0.1682 3.4675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000794522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:43 Heat of formation + Delta-G solvation = 116.519885 kcal Electronic energy + Delta-G solvation = -23647.984931 eV Core-core repulsion = 20151.161914 eV Total energy + Delta-G solvation = -3496.823017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 323.052 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21597 -39.37639 -37.18664 -36.01083 -35.48657 -33.72725 -32.89849 -31.18015 -29.82520 -28.88083 -28.59430 -25.91287 -24.30235 -22.93950 -21.81941 -21.17740 -20.83109 -18.93129 -17.99296 -16.88583 -16.44257 -16.09105 -15.45975 -14.99530 -14.63496 -14.45535 -14.14067 -14.00255 -13.59989 -13.42687 -13.26839 -13.05549 -12.53332 -12.16294 -11.87310 -11.54792 -11.36731 -11.33195 -11.17906 -11.01453 -10.92450 -10.88795 -10.61398 -10.56641 -10.39777 -10.00164 -9.09334 -8.90944 -8.09896 -8.04717 -7.55493 -7.18258 -6.70127 -4.43045 0.65436 1.18672 1.87361 2.05533 2.57683 2.87635 2.96532 3.02602 3.06748 3.49664 3.61159 3.98040 4.20772 4.45350 4.70825 4.94772 4.99385 5.13863 5.20391 5.32712 5.36028 5.45645 5.65754 5.73253 5.78754 5.88073 5.98103 6.18038 6.38512 6.45697 6.53943 6.60461 6.67727 6.80445 6.82030 6.86800 6.95512 7.07824 7.28979 7.44639 8.07277 8.17813 8.50146 8.76876 9.10392 10.20357 Molecular weight = 323.05amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.005820 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.271973 B = 4809.981135 C = 7579.711060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.058 3.942 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.360 4.360 8 H 0.112 0.888 9 N -0.287 5.287 10 C 0.155 3.845 11 C -0.122 4.122 12 C -0.074 4.074 13 C -0.097 4.097 14 Cl -0.092 7.092 15 C -0.023 4.023 16 C -0.121 4.121 17 C 0.087 3.913 18 N -0.405 5.405 19 C 0.036 3.964 20 C -0.067 4.067 21 C -0.137 4.137 22 C -0.109 4.109 23 C -0.088 4.088 24 C 0.123 3.877 25 N -0.400 5.400 26 C 0.303 3.697 27 H 0.282 0.718 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -4.510 2.526 5.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.158 4.158 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.130 0.870 9 N 0.042 4.958 10 C 0.042 3.958 11 C -0.143 4.143 12 C -0.094 4.094 13 C -0.125 4.125 14 Cl -0.063 7.063 15 C -0.043 4.043 16 C -0.128 4.128 17 C -0.067 4.067 18 N -0.119 5.119 19 C -0.095 4.095 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.130 4.130 23 C -0.108 4.108 24 C -0.012 4.012 25 N -0.119 5.119 26 C 0.056 3.944 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.630 -4.149 2.467 4.867 hybrid contribution 0.196 0.834 -0.159 0.871 sum -0.433 -3.315 2.308 4.062 Atomic orbital electron populations 1.69888 1.06648 1.29467 1.35362 1.25425 0.95299 1.00438 0.94681 0.85841 0.79713 0.79957 0.78750 1.19779 1.20011 1.18787 1.19687 0.96426 0.82946 1.49577 0.87036 1.39883 1.24125 1.04504 1.27239 1.18417 0.96833 0.84478 0.96109 1.19948 0.99697 0.94854 0.99779 1.20584 0.98295 0.91232 0.99336 1.20218 1.03036 0.84130 1.05135 1.98304 1.97792 1.16427 1.93820 1.20207 0.95780 0.93682 0.94651 1.18028 0.99412 0.92523 1.02823 1.20338 0.95871 0.92304 0.98181 1.67718 1.04591 1.35673 1.03898 1.19251 0.99520 0.90370 1.00375 1.20598 0.93838 0.99649 0.94531 1.20646 1.01094 0.92865 1.01239 1.20732 0.97304 0.96152 0.98825 1.20668 0.95599 0.98825 0.95695 1.19434 0.94123 0.92211 0.95476 1.67827 1.05976 1.33493 1.04632 1.19179 0.93513 0.88942 0.92811 0.90764 0.84915 0.85144 0.85229 0.85569 0.86014 0.85998 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.80 55.49 0.60 -19.88 16 2 C 0.06 1.41 5.03 -17.49 -0.09 1.33 16 3 Si 0.93 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.36 -8.88 9.75 -14.97 -0.15 -9.03 16 8 H 0.11 2.53 7.89 -52.48 -0.41 2.11 16 9 N -0.29 -7.16 2.91 -58.56 -0.17 -7.33 16 10 C 0.16 3.40 6.71 -83.66 -0.56 2.84 16 11 C -0.12 -2.19 9.88 -39.37 -0.39 -2.58 16 12 C -0.07 -1.15 9.80 -39.53 -0.39 -1.54 16 13 C -0.10 -1.59 6.32 -39.47 -0.25 -1.84 16 14 Cl -0.09 -1.30 28.95 -51.86 -1.50 -2.80 16 15 C -0.02 -0.42 9.87 -39.29 -0.39 -0.81 16 16 C -0.12 -2.62 6.34 -104.92 -0.67 -3.28 16 17 C 0.09 2.08 7.49 -82.63 -0.62 1.46 16 18 N -0.40 -9.17 10.48 -7.30 -0.08 -9.24 16 19 C 0.04 0.76 6.59 -84.76 -0.56 0.20 16 20 C -0.07 -1.12 9.98 -39.45 -0.39 -1.52 16 21 C -0.14 -1.95 9.95 -39.92 -0.40 -2.35 16 22 C -0.11 -1.61 9.95 -39.92 -0.40 -2.00 16 23 C -0.09 -1.61 9.98 -39.45 -0.39 -2.01 16 24 C 0.12 2.75 6.59 -84.75 -0.56 2.19 16 25 N -0.40 -10.14 8.03 -9.76 -0.08 -10.22 16 26 C 0.30 7.76 6.91 -155.06 -1.07 6.69 16 27 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 29 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -28.39 315.80 -11.27 -39.66 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.51 Total: 3.61 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -7.26 Total: -12.25 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.27 Total: -46.67 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.39 -11.27 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000794522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.183 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds