Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38856 * 120.00015 * 2 1 4 4 C 1.39570 * 119.84308 * 204.72994 * 3 2 1 5 5 C 1.36339 * 120.16127 * 179.71571 * 4 3 2 6 6 C 1.40886 * 119.83509 * 0.55460 * 5 4 3 7 7 C 1.41138 * 120.15262 * 179.70113 * 6 5 4 8 8 H 1.08004 * 119.99947 * 204.62696 * 7 6 5 9 9 C 1.39866 * 120.00381 * 24.62545 * 7 6 5 10 10 N 1.30902 * 119.99661 * 17.95284 * 9 7 6 11 11 Si 1.86801 * 120.00161 * 197.96084 * 9 7 6 12 12 H 1.48491 * 109.47278 * 89.99669 * 11 9 7 13 13 H 1.48499 * 109.46851 * 209.99855 * 11 9 7 14 14 H 1.48508 * 109.46854 * 329.99544 * 11 9 7 15 15 C 1.40883 * 119.68850 * 359.71479 * 6 5 4 16 16 C 1.36333 * 119.83724 * 0.02562 * 15 6 5 17 17 S 1.65598 * 120.00212 * 179.97438 * 2 1 3 18 18 O 1.42098 * 106.40825 * 203.54018 * 17 2 1 19 19 O 1.42101 * 106.39957 * 336.46578 * 17 2 1 20 20 C 1.76204 * 107.21570 * 89.99908 * 17 2 1 21 21 C 1.33395 * 125.20229 * 90.00206 * 20 17 2 22 22 C 1.38420 * 114.92210 * 179.97438 * 21 20 17 23 23 C 1.33394 * 114.91925 * 359.97438 * 22 21 20 24 24 S 1.75885 * 125.20339 * 269.69725 * 20 17 2 25 25 H 1.08999 * 109.46929 * 270.00393 * 1 2 3 26 26 H 1.09007 * 109.47113 * 29.99984 * 1 2 3 27 27 H 1.08999 * 109.47325 * 150.00425 * 1 2 3 28 28 H 1.08009 * 119.91771 * 359.97295 * 4 3 2 29 29 H 1.08001 * 120.08046 * 180.27217 * 5 4 3 30 30 H 0.97008 * 119.99541 * 180.02562 * 10 9 7 31 31 H 1.08004 * 120.07814 * 179.97438 * 15 6 5 32 32 H 1.08009 * 119.91727 * 179.97438 * 16 15 6 33 33 H 1.08004 * 122.53795 * 359.95682 * 21 20 17 34 34 H 1.07997 * 122.53844 * 180.02562 * 22 21 20 35 35 H 1.07998 * 125.19781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2025 0.0000 4 6 3.4588 1.2542 -0.5065 5 6 4.1443 2.4327 -0.5149 6 6 3.5421 3.5976 -0.0001 7 6 4.2480 4.8198 0.0002 8 1 3.9932 5.5904 0.7129 9 6 5.2774 5.0332 -0.9223 10 7 5.3641 4.2828 -1.9913 11 14 6.5286 6.3888 -0.6287 12 1 7.6727 5.8469 0.1475 13 1 7.0154 6.9041 -1.9335 14 1 5.8922 7.4932 0.1334 15 6 2.2321 3.5367 0.5147 16 6 1.5566 2.3525 0.5119 17 16 2.2930 -1.4341 0.0006 18 8 3.5760 -1.1566 0.5449 19 8 1.4113 -2.4062 0.5454 20 6 2.5538 -1.8865 -1.6823 21 6 3.6115 -1.5389 -2.4169 22 6 3.5994 -2.0126 -3.7175 23 6 2.5321 -2.7453 -4.0389 24 16 1.4629 -2.8717 -2.6481 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.9210 0.3593 -0.8964 29 1 5.1483 2.4721 -0.9112 30 1 6.0783 4.4305 -2.6309 31 1 1.7645 4.4258 0.9113 32 1 0.5523 2.3043 0.9066 33 1 4.4163 -0.9335 -2.0266 34 1 4.3943 -1.8053 -4.4186 35 1 2.3537 -3.1953 -5.0043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225132028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = -4.999117 kcal Electronic energy + Delta-G solvation = -22650.325147 eV Core-core repulsion = 19253.427578 eV Total energy + Delta-G solvation = -3396.897570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.38541 -37.83996 -36.94772 -35.62605 -35.47579 -33.16622 -30.14707 -29.68777 -29.06062 -26.49636 -24.55462 -24.31832 -21.34216 -20.81202 -20.19096 -18.97403 -18.23945 -17.35897 -17.00182 -16.29611 -16.00467 -15.13655 -14.91700 -14.58674 -14.17653 -13.81072 -13.42315 -13.09938 -13.02383 -12.95772 -12.60455 -12.34936 -12.19014 -12.03893 -11.89783 -11.73448 -11.47102 -11.38570 -11.23044 -11.12091 -10.90884 -10.82508 -10.70373 -9.85547 -9.64354 -9.46812 -9.23749 -9.04292 -8.61741 -7.63282 -7.05996 -6.77942 -4.31999 0.35401 0.66894 1.39318 1.71327 2.44998 2.68478 2.99810 3.06530 3.09790 3.15030 3.25414 3.91288 3.95402 4.56200 4.69218 4.77759 5.12110 5.22661 5.34210 5.62731 5.63658 5.77492 5.84821 5.90644 6.03364 6.09479 6.20403 6.29710 6.66272 6.95397 7.04069 7.11832 7.27816 7.52466 7.84580 7.93513 8.00258 8.20191 8.56254 8.84976 8.91628 10.14870 Molecular weight = 323.04amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.004266 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.463330 B = 6561.502768 C = 7479.413670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.919 5.919 3 C 0.014 3.986 4 C -0.124 4.124 5 C -0.138 4.138 6 C 0.101 3.899 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.075 3.925 10 N -0.794 5.794 11 Si 0.908 3.092 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.262 1.262 15 C -0.209 4.209 16 C -0.100 4.100 17 S 2.712 3.288 18 O -0.934 6.934 19 O -0.961 6.961 20 C -0.785 4.785 21 C 0.010 3.990 22 C -0.157 4.157 23 C -0.178 4.178 24 S 0.193 5.807 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.281 0.719 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -10.485 -4.807 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.749 5.749 3 C -0.079 4.079 4 C -0.144 4.144 5 C -0.158 4.158 6 C 0.098 3.902 7 C -0.487 4.487 8 H 0.097 0.903 9 C -0.142 4.142 10 N -0.419 5.419 11 Si 0.733 3.267 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.186 1.186 15 C -0.229 4.229 16 C -0.122 4.122 17 S 2.799 3.201 18 O -0.924 6.924 19 O -0.951 6.951 20 C -0.985 4.985 21 C -0.025 4.025 22 C -0.188 4.188 23 C -0.316 4.316 24 S 0.458 5.542 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.508 -11.771 -4.069 14.052 hybrid contribution 1.863 1.388 -1.224 2.626 sum -4.645 -10.383 -5.293 12.546 Atomic orbital electron populations 1.21546 0.78585 1.02992 1.02323 1.54524 1.14321 1.19924 1.86155 1.16909 0.94062 0.84813 1.12135 1.20430 0.93450 0.98387 1.02175 1.20877 1.00192 0.90567 1.04140 1.17643 0.90225 0.92971 0.89376 1.19535 1.13738 1.00704 1.14733 0.90302 1.25905 0.97581 0.97113 0.93643 1.69849 1.28950 1.36037 1.07081 0.86306 0.80751 0.81034 0.78610 1.19217 1.20382 1.18622 1.20589 0.95539 0.96003 1.10802 1.19995 0.98557 0.92332 1.01302 1.01532 0.73612 0.72119 0.72808 1.93631 1.39658 1.83929 1.75194 1.93554 1.66571 1.59086 1.75890 1.36133 1.09744 1.21294 1.31320 1.20248 0.95811 0.93892 0.92518 1.20469 1.00253 1.01058 0.97053 1.26174 0.98818 1.03627 1.02939 1.83985 1.21850 1.47624 1.00766 0.92110 0.90200 0.91638 0.88574 0.85822 0.90853 0.88462 0.88675 0.82297 0.83180 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 9.26 59.85 0.55 1.87 16 2 N -0.92 -16.85 3.37 -65.26 -0.22 -17.07 16 3 C 0.01 0.29 6.12 -83.69 -0.51 -0.22 16 4 C -0.12 -2.88 8.38 -39.77 -0.33 -3.21 16 5 C -0.14 -3.52 8.64 -39.26 -0.34 -3.86 16 6 C 0.10 2.61 5.57 -106.79 -0.60 2.02 16 7 C -0.46 -11.79 9.03 -37.87 -0.34 -12.13 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 10 N -0.79 -19.84 10.96 55.54 0.61 -19.23 16 11 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 12 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 15 C -0.21 -4.93 9.74 -39.27 -0.38 -5.31 16 16 C -0.10 -2.16 9.05 -39.77 -0.36 -2.52 16 17 S 2.71 49.28 5.22 -107.50 -0.56 48.72 16 18 O -0.93 -19.66 14.83 -57.17 -0.85 -20.51 16 19 O -0.96 -17.82 16.98 -57.17 -0.97 -18.80 16 20 C -0.79 -12.34 6.53 29.04 0.19 -12.15 16 21 C 0.01 0.15 9.09 -41.21 -0.37 -0.23 16 22 C -0.16 -1.89 10.18 -41.21 -0.42 -2.31 16 23 C -0.18 -1.90 11.23 29.04 0.33 -1.57 16 24 S 0.19 2.43 23.21 -107.50 -2.50 -0.06 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.08 7.45 -51.93 -0.39 0.69 16 27 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 28 H 0.10 2.05 3.27 -52.48 -0.17 1.87 16 29 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 30 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 31 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 32 H 0.10 1.75 7.10 -52.48 -0.37 1.38 16 33 H 0.16 2.42 6.29 -52.48 -0.33 2.09 16 34 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -30.20 320.03 -10.60 -40.80 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.23 Total: 5.97 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: -2.68 Total: -37.87 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.39 Total: -36.31 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.82 Total: -39.30 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 51.72 SS G_CDS: -3.06 Total: 48.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.20 -10.60 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225132028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.802 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds