Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38856 * 120.00015 * 2 1 4 4 C 1.39570 * 119.84308 * 204.72994 * 3 2 1 5 5 C 1.36339 * 120.16127 * 179.71571 * 4 3 2 6 6 C 1.40886 * 119.83509 * 0.55460 * 5 4 3 7 7 C 1.41138 * 120.15262 * 179.70113 * 6 5 4 8 8 H 1.08004 * 119.99947 * 204.62696 * 7 6 5 9 9 C 1.39866 * 120.00381 * 24.62545 * 7 6 5 10 10 N 1.30902 * 119.99661 * 17.95284 * 9 7 6 11 11 Si 1.86801 * 120.00161 * 197.96084 * 9 7 6 12 12 H 1.48491 * 109.47278 * 89.99669 * 11 9 7 13 13 H 1.48499 * 109.46851 * 209.99855 * 11 9 7 14 14 H 1.48508 * 109.46854 * 329.99544 * 11 9 7 15 15 C 1.40883 * 119.68850 * 359.71479 * 6 5 4 16 16 C 1.36333 * 119.83724 * 0.02562 * 15 6 5 17 17 S 1.65598 * 120.00212 * 179.97438 * 2 1 3 18 18 O 1.42098 * 106.40825 * 203.54018 * 17 2 1 19 19 O 1.42101 * 106.39957 * 336.46578 * 17 2 1 20 20 C 1.76204 * 107.21570 * 89.99908 * 17 2 1 21 21 C 1.33395 * 125.20229 * 90.00206 * 20 17 2 22 22 C 1.38420 * 114.92210 * 179.97438 * 21 20 17 23 23 C 1.33394 * 114.91925 * 359.97438 * 22 21 20 24 24 S 1.75885 * 125.20339 * 269.69725 * 20 17 2 25 25 H 1.08999 * 109.46929 * 270.00393 * 1 2 3 26 26 H 1.09007 * 109.47113 * 29.99984 * 1 2 3 27 27 H 1.08999 * 109.47325 * 150.00425 * 1 2 3 28 28 H 1.08009 * 119.91771 * 359.97295 * 4 3 2 29 29 H 1.08001 * 120.08046 * 180.27217 * 5 4 3 30 30 H 0.97008 * 119.99541 * 180.02562 * 10 9 7 31 31 H 1.08004 * 120.07814 * 179.97438 * 15 6 5 32 32 H 1.08009 * 119.91727 * 179.97438 * 16 15 6 33 33 H 1.08004 * 122.53795 * 359.95682 * 21 20 17 34 34 H 1.07997 * 122.53844 * 180.02562 * 22 21 20 35 35 H 1.07998 * 125.19781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2025 0.0000 4 6 3.4588 1.2542 -0.5065 5 6 4.1443 2.4327 -0.5149 6 6 3.5421 3.5976 -0.0001 7 6 4.2480 4.8198 0.0002 8 1 3.9932 5.5904 0.7129 9 6 5.2774 5.0332 -0.9223 10 7 5.3641 4.2828 -1.9913 11 14 6.5286 6.3888 -0.6287 12 1 7.6727 5.8469 0.1475 13 1 7.0154 6.9041 -1.9335 14 1 5.8922 7.4932 0.1334 15 6 2.2321 3.5367 0.5147 16 6 1.5566 2.3525 0.5119 17 16 2.2930 -1.4341 0.0006 18 8 3.5760 -1.1566 0.5449 19 8 1.4113 -2.4062 0.5454 20 6 2.5538 -1.8865 -1.6823 21 6 3.6115 -1.5389 -2.4169 22 6 3.5994 -2.0126 -3.7175 23 6 2.5321 -2.7453 -4.0389 24 16 1.4629 -2.8717 -2.6481 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.9210 0.3593 -0.8964 29 1 5.1483 2.4721 -0.9112 30 1 6.0783 4.4305 -2.6309 31 1 1.7645 4.4258 0.9113 32 1 0.5523 2.3043 0.9066 33 1 4.4163 -0.9335 -2.0266 34 1 4.3943 -1.8053 -4.4186 35 1 2.3537 -3.1953 -5.0043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225132028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = -23.327425 kcal Electronic energy + Delta-G solvation = -22651.119922 eV Core-core repulsion = 19253.427578 eV Total energy + Delta-G solvation = -3397.692345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 323.044 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07889 -38.94256 -38.37732 -37.16859 -37.07537 -34.92832 -31.74148 -30.93667 -30.81602 -27.97766 -26.13180 -25.45919 -23.09150 -22.54388 -21.35583 -20.13059 -19.69485 -19.18143 -18.50144 -17.79539 -17.21407 -16.78944 -16.14864 -15.98775 -15.77529 -15.22434 -14.91521 -14.65993 -14.32068 -14.19859 -13.84360 -13.76340 -13.73043 -13.54271 -13.39991 -13.23562 -13.08030 -12.90198 -12.78789 -12.56583 -12.47073 -12.33174 -11.95040 -11.62550 -11.30470 -11.11843 -10.77691 -10.38241 -9.60610 -9.47446 -8.85279 -8.57812 -6.22134 -0.88840 -0.52897 0.33205 0.75417 0.91706 1.14058 1.41357 1.42283 1.52976 1.53779 1.88676 2.23692 2.52903 2.77331 3.28040 3.70804 3.86132 3.91893 4.20657 4.27586 4.39065 4.45643 4.59068 4.72379 4.80294 4.89269 4.92344 4.99009 5.15054 5.23572 5.26944 5.31917 5.48184 5.68846 6.03094 6.08085 6.16736 6.36379 6.68587 6.96633 7.04699 8.36426 Molecular weight = 323.04amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.004266 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.463330 B = 6561.502768 C = 7479.413670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.924 5.924 3 C 0.028 3.972 4 C -0.136 4.136 5 C -0.163 4.163 6 C 0.068 3.932 7 C -0.494 4.494 8 H 0.078 0.922 9 C 0.035 3.965 10 N -0.824 5.824 11 Si 0.980 3.020 12 H -0.266 1.266 13 H -0.268 1.268 14 H -0.258 1.258 15 C -0.218 4.218 16 C -0.101 4.101 17 S 2.720 3.280 18 O -0.974 6.974 19 O -0.968 6.968 20 C -0.817 4.817 21 C 0.002 3.998 22 C -0.174 4.174 23 C -0.148 4.148 24 S 0.214 5.786 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.288 0.712 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.176 0.824 35 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -11.399 -6.217 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.754 5.754 3 C -0.066 4.066 4 C -0.157 4.157 5 C -0.183 4.183 6 C 0.065 3.935 7 C -0.524 4.524 8 H 0.096 0.904 9 C -0.179 4.179 10 N -0.451 5.451 11 Si 0.801 3.199 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.181 1.181 15 C -0.238 4.238 16 C -0.123 4.123 17 S 2.811 3.189 18 O -0.965 6.965 19 O -0.959 6.959 20 C -1.020 5.020 21 C -0.034 4.034 22 C -0.204 4.204 23 C -0.285 4.285 24 S 0.479 5.521 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.193 0.807 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.781 -12.692 -5.435 15.849 hybrid contribution 2.114 1.459 -0.872 2.713 sum -5.668 -11.233 -6.307 14.074 Atomic orbital electron populations 1.21915 0.76137 1.04795 1.03951 1.54541 1.15968 1.18542 1.86351 1.16989 0.93570 0.86119 1.09949 1.20664 0.94479 0.98221 1.02298 1.20819 0.99989 0.91638 1.05849 1.17987 0.91543 0.93330 0.90605 1.19769 1.15681 1.01061 1.15869 0.90393 1.26710 0.98854 0.99460 0.92915 1.69899 1.29774 1.37584 1.07794 0.85236 0.77887 0.78019 0.78769 1.19083 1.19266 1.18118 1.20833 0.95001 0.97410 1.10585 1.20340 0.99994 0.91449 1.00496 1.00910 0.72654 0.71857 0.73476 1.93579 1.41471 1.84454 1.76981 1.93533 1.66486 1.58960 1.76913 1.35618 1.11812 1.24120 1.30447 1.20404 0.95196 0.93774 0.94039 1.20675 1.01870 1.01726 0.96142 1.26716 0.96861 1.01291 1.03661 1.83882 1.21178 1.46273 1.00809 0.90607 0.89024 0.89346 0.87336 0.87604 0.90171 0.87279 0.85041 0.83918 0.80706 0.76704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.01 9.26 127.77 1.18 3.19 16 2 N -0.92 -33.03 3.37 -360.37 -1.21 -34.25 16 3 C 0.03 1.20 6.12 38.67 0.24 1.44 16 4 C -0.14 -6.53 8.38 22.15 0.19 -6.34 16 5 C -0.16 -8.72 8.64 22.47 0.19 -8.53 16 6 C 0.07 3.67 5.57 -21.27 -0.12 3.55 16 7 C -0.49 -26.40 9.03 23.38 0.21 -26.19 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.04 1.77 5.13 85.23 0.44 2.21 16 10 N -0.82 -42.60 10.96 21.82 0.24 -42.36 16 11 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 12 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 13 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 15 C -0.22 -10.40 9.74 22.47 0.22 -10.18 16 16 C -0.10 -4.28 9.05 22.15 0.20 -4.08 16 17 S 2.72 98.39 5.22 -56.49 -0.29 98.09 16 18 O -0.97 -42.27 14.83 -128.00 -1.90 -44.16 16 19 O -0.97 -35.12 16.98 -128.00 -2.17 -37.29 16 20 C -0.82 -24.97 6.53 66.72 0.44 -24.53 16 21 C 0.00 0.06 9.09 21.22 0.19 0.25 16 22 C -0.17 -3.77 10.18 21.22 0.22 -3.56 16 23 C -0.15 -2.56 11.23 66.72 0.75 -1.81 16 24 S 0.21 4.81 23.21 -56.49 -1.31 3.50 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.22 7.45 -2.38 -0.02 2.20 16 27 H 0.09 1.93 7.79 -2.39 -0.02 1.92 16 28 H 0.11 4.84 3.27 -2.91 -0.01 4.83 16 29 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 30 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 31 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.52 7.10 -2.91 -0.02 4.50 16 33 H 0.14 4.55 6.29 -2.91 -0.02 4.53 16 34 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -67.84 320.03 0.86 -66.98 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.14 Total: 24.01 kcal Atomic # 6 Polarization: -78.93 SS G_CDS: 4.34 Total: -74.58 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -0.97 Total: -76.61 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -4.07 Total: -81.46 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: 103.20 SS G_CDS: -1.61 Total: 101.59 kcal Total: -67.84 0.86 -66.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225132028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.657 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds