Wall clock time and date at job start Tue Mar 31 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29875 * 125.73278 * 2 1 4 4 N 1.39783 * 109.43903 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.94410 * 180.02562 * 4 3 2 6 6 C 1.36710 * 108.10656 * 0.02562 * 4 3 2 7 7 S 1.75891 * 142.79995 * 179.97438 * 6 4 3 8 8 C 1.75579 * 91.47027 * 179.97438 * 7 6 4 9 9 C 1.46405 * 124.79352 * 179.73309 * 8 7 6 10 10 O 1.21629 * 120.00459 * 180.02562 * 9 8 7 11 11 O 1.34900 * 119.99690 * 0.02952 * 9 8 7 12 12 C 1.45202 * 116.99915 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47051 * 179.97438 * 12 11 9 14 14 O 1.21300 * 120.00319 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00050 * 179.97438 * 13 12 11 16 16 C 1.37103 * 120.00265 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99874 * 0.02562 * 16 15 13 18 18 C 1.38944 * 120.00204 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00282 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46846 * 60.00192 * 20 18 16 22 22 H 1.48494 * 109.47432 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46856 * 300.00290 * 20 18 16 24 24 C 1.34215 * 110.41821 * 0.02562 * 8 7 6 25 25 C 1.38564 * 107.41745 * 359.97438 * 6 4 3 26 26 H 1.09001 * 109.46863 * 269.99696 * 1 2 3 27 27 H 1.09002 * 109.47446 * 29.99634 * 1 2 3 28 28 H 1.08995 * 109.47410 * 149.99750 * 1 2 3 29 29 H 1.08997 * 109.47214 * 270.00414 * 5 4 3 30 30 H 1.08998 * 109.46990 * 30.00176 * 5 4 3 31 31 H 1.09002 * 109.46899 * 150.00444 * 5 4 3 32 32 H 1.09004 * 109.47049 * 299.99600 * 12 11 9 33 33 H 1.09001 * 109.47189 * 60.00026 * 12 11 9 34 34 H 0.96994 * 120.00149 * 0.02562 * 15 13 12 35 35 H 0.97003 * 120.00350 * 179.97438 * 19 18 16 36 36 H 1.08000 * 122.34838 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0543 0.0000 4 7 3.6071 0.6621 -0.0006 5 6 4.7653 1.5592 -0.0002 6 6 3.6504 -0.7043 -0.0015 7 16 4.7576 -2.0710 -0.0032 8 6 3.4222 -3.2109 -0.0023 9 6 3.5673 -4.6677 -0.0086 10 8 2.5795 -5.3774 -0.0079 11 8 4.7967 -5.2230 -0.0152 12 6 4.8649 -6.6734 -0.0206 13 6 6.3077 -7.1084 -0.0282 14 8 7.1916 -6.2778 -0.0294 15 7 6.6159 -8.4205 -0.0337 16 6 7.9286 -8.8163 -0.0411 17 1 8.7156 -8.0767 -0.0421 18 6 8.2463 -10.1689 -0.0461 19 7 7.2888 -11.0688 -0.0443 20 14 10.0348 -10.7082 -0.0555 21 1 10.7162 -10.1842 1.1555 22 1 10.1046 -12.1915 -0.0605 23 1 10.7054 -10.1775 -1.2696 24 6 2.2494 -2.5582 -0.0014 25 6 2.3421 -1.1607 -0.0010 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 5.0522 1.7825 -1.0278 30 1 4.5076 2.4849 0.5143 31 1 5.5977 1.0777 0.5130 32 1 4.3720 -7.0637 0.8699 33 1 4.3654 -7.0573 -0.9102 34 1 5.9091 -9.0847 -0.0331 35 1 7.5106 -12.0131 -0.0482 36 1 1.3008 -3.0744 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:23 Heat of formation + Delta-G solvation = -17.163834 kcal Electronic energy + Delta-G solvation = -23229.552639 eV Core-core repulsion = 19421.667448 eV Total energy + Delta-G solvation = -3807.885191 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 323.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66575 -40.19643 -38.16289 -36.48658 -35.65582 -34.09402 -34.00147 -31.39025 -30.16369 -29.70389 -28.28836 -26.20070 -24.75511 -23.82168 -22.55929 -20.44822 -19.76586 -19.53347 -18.32504 -18.05695 -17.12280 -16.40697 -16.31840 -16.10301 -15.80937 -15.45571 -14.81753 -14.54823 -14.15442 -13.99004 -13.96053 -13.71889 -13.49596 -13.07306 -13.03844 -12.75561 -12.37634 -12.30548 -12.03279 -11.69458 -11.62065 -11.27530 -11.11958 -11.11497 -10.55903 -10.49052 -10.44412 -10.29193 -10.10449 -9.59691 -8.76214 -8.52927 -8.09188 -8.08418 -6.49870 -3.92017 0.41787 0.65472 1.33052 1.61439 2.12351 2.34410 2.60925 2.97119 3.15484 3.22862 3.27432 3.73634 3.96377 4.10001 4.32796 4.40899 4.67980 4.73985 4.77797 4.99924 5.04786 5.12684 5.15052 5.23456 5.38163 5.45180 5.50036 5.69170 5.73708 5.75724 6.04739 6.09725 6.31175 6.52243 7.16531 7.47587 7.76054 7.94514 8.48296 9.06842 9.39052 9.88907 10.67250 Molecular weight = 323.08amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.002358 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.805954 B =11869.416244 C =12801.450987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.135 3.865 3 N -0.267 5.267 4 N -0.354 5.354 5 C 0.103 3.897 6 C 0.018 3.982 7 S 0.257 5.743 8 C -0.254 4.254 9 C 0.539 3.461 10 O -0.503 6.503 11 O -0.323 6.323 12 C 0.063 3.937 13 C 0.438 3.562 14 O -0.576 6.576 15 N -0.552 5.552 16 C -0.303 4.303 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.028 3.972 25 C -0.231 4.231 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 21.321 0.183 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 N -0.084 5.084 4 N -0.141 5.141 5 C -0.038 4.038 6 C -0.221 4.221 7 S 0.512 5.488 8 C -0.372 4.372 9 C 0.383 3.617 10 O -0.394 6.394 11 O -0.237 6.237 12 C -0.015 4.015 13 C 0.223 3.777 14 O -0.460 6.460 15 N -0.189 5.189 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.005 4.005 25 C -0.247 4.247 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.552 22.682 0.179 24.612 hybrid contribution -1.038 -1.591 -0.007 1.900 sum -10.590 21.091 0.173 23.601 Atomic orbital electron populations 1.20315 0.85455 1.04079 1.03744 1.22392 0.96858 0.87811 0.96937 1.76711 0.85876 1.22667 1.23154 1.47827 1.05070 1.00749 1.60428 1.21988 0.83910 0.94020 1.03896 1.25106 1.01233 0.90769 1.04972 1.84779 1.01071 0.87266 1.75710 1.22353 0.97437 0.94420 1.22981 1.19552 0.82040 0.86967 0.73167 1.90882 1.39298 1.62424 1.46747 1.86618 1.29372 1.24399 1.83358 1.22799 0.98732 0.76157 1.03785 1.19287 0.88356 0.84004 0.86044 1.90563 1.48573 1.51566 1.55265 1.41689 1.09084 1.04353 1.63791 1.19672 0.83222 0.91966 1.48311 0.87660 1.25311 1.00150 0.95401 0.96875 1.69605 1.32690 1.01905 1.49548 0.85856 0.81584 0.77246 0.79188 1.19752 1.20874 1.19757 1.19437 0.98391 0.90682 0.92032 1.18840 0.91499 0.93940 1.20384 0.89686 0.90218 0.89677 0.90275 0.88637 0.89202 0.89256 0.89261 0.77118 0.91561 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.12 16 2 C 0.13 1.41 7.28 -81.58 -0.59 0.82 16 3 N -0.27 -3.04 12.44 34.16 0.42 -2.61 16 4 N -0.35 -3.79 4.05 -66.02 -0.27 -4.06 16 5 C 0.10 0.65 11.48 59.84 0.69 1.34 16 6 C 0.02 0.22 8.01 -15.26 -0.12 0.10 16 7 S 0.26 3.23 23.07 -107.50 -2.48 0.75 16 8 C -0.25 -3.58 6.32 -37.71 -0.24 -3.82 16 9 C 0.54 9.06 7.92 34.02 0.27 9.32 16 10 O -0.50 -8.97 16.53 -19.36 -0.32 -9.29 16 11 O -0.32 -6.15 9.57 -47.73 -0.46 -6.61 16 12 C 0.06 1.20 5.96 36.00 0.21 1.41 16 13 C 0.44 10.53 7.86 -10.99 -0.09 10.44 16 14 O -0.58 -15.88 16.08 -14.12 -0.23 -16.11 16 15 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 17 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 20 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 C 0.03 0.34 9.84 -40.32 -0.40 -0.06 16 25 C -0.23 -2.73 6.55 -107.25 -0.70 -3.43 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.16 1.62 7.97 -52.49 -0.42 1.21 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -34.20 344.27 -6.96 -41.17 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.63 Total: 5.05 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.83 Total: 8.13 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.82 Total: -43.87 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.00 Total: -32.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.48 Total: 0.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.20 -6.96 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.002 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds