Wall clock time and date at job start Tue Mar 31 2020 04:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 C 1.53001 * 109.47230 * 239.99962 * 2 1 3 5 5 C 1.53000 * 109.47004 * 120.00067 * 2 1 3 6 6 C 1.54415 * 129.01493 * 59.99882 * 5 2 1 7 7 C 1.54414 * 78.89471 * 180.64340 * 6 5 2 8 8 C 1.50698 * 129.01517 * 180.63916 * 7 6 5 9 9 O 1.21281 * 119.99830 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00043 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99917 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.88509 * 31.11776 * 11 10 8 13 13 C 1.55131 * 111.19271 * 267.18580 * 11 10 8 14 14 N 1.47422 * 104.72316 * 279.19422 * 13 11 10 15 15 C 1.36931 * 125.65211 * 155.81627 * 14 13 11 16 16 H 1.08002 * 120.00103 * 359.71756 * 15 14 13 17 17 C 1.38812 * 120.00429 * 179.71258 * 15 14 13 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00576 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00326 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00037 * 19 17 15 23 23 C 1.47026 * 108.70212 * 335.54953 * 14 13 11 24 24 C 1.54333 * 107.26936 * 1.28776 * 23 14 13 25 25 H 1.09000 * 110.71787 * 263.64953 * 24 23 14 26 26 O 1.42904 * 110.71753 * 140.55578 * 24 23 14 27 27 C 1.54896 * 84.49035 * 43.15343 * 7 6 5 28 28 C 1.54888 * 129.95174 * 181.17282 * 5 2 1 29 29 H 1.08998 * 109.47335 * 300.00285 * 1 2 3 30 30 H 1.09001 * 109.46719 * 59.99674 * 1 2 3 31 31 H 1.08998 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46904 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47223 * 299.99413 * 3 2 1 34 34 H 1.08999 * 109.47435 * 60.00454 * 3 2 1 35 35 H 1.08997 * 109.46819 * 300.00286 * 4 2 1 36 36 H 1.09001 * 109.46794 * 59.99994 * 4 2 1 37 37 H 1.08996 * 109.47308 * 180.02562 * 4 2 1 38 38 H 1.08995 * 114.92876 * 68.15530 * 6 5 2 39 39 H 1.09000 * 114.98550 * 293.13238 * 6 5 2 40 40 H 0.97001 * 120.00355 * 0.02562 * 10 8 7 41 41 H 1.08992 * 110.49878 * 160.34671 * 13 11 10 42 42 H 1.09001 * 110.33913 * 37.95630 * 13 11 10 43 43 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88411 * 120.70256 * 23 14 13 45 45 H 1.08998 * 109.88161 * 241.87725 * 23 14 13 46 46 H 0.96695 * 113.99888 * 61.45570 * 26 24 23 47 47 H 1.08997 * 114.97789 * 69.39663 * 27 7 6 48 48 H 1.09000 * 114.97550 * 204.56193 * 27 7 6 49 49 H 1.09002 * 116.12669 * 67.75542 * 28 5 2 50 50 H 1.09005 * 113.83308 * 292.58974 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.7984 -2.1793 1.6966 7 6 2.6730 -1.6537 2.8555 8 6 3.1647 -2.3829 4.0792 9 8 2.8748 -3.5484 4.2479 10 7 3.9265 -1.7399 4.9862 11 6 4.4049 -2.4490 6.1755 12 1 4.5604 -3.5064 5.9612 13 6 3.4315 -2.2626 7.3690 14 7 3.7706 -0.9405 7.9260 15 6 2.9306 -0.1426 8.6560 16 1 1.9215 -0.4673 8.8627 17 6 3.3760 1.0835 9.1304 18 7 4.6057 1.4795 8.8782 19 14 2.2299 2.1723 10.1256 20 1 1.4873 3.0761 9.2108 21 1 1.2668 1.3243 10.8731 22 1 3.0243 2.9818 11.0841 23 6 5.1623 -0.6232 7.5735 24 6 5.6999 -1.7973 6.7283 25 1 6.2527 -2.4999 7.3519 26 8 6.5200 -1.3179 5.6608 27 6 1.7755 -0.3946 2.7637 28 6 3.4907 -0.9713 1.7308 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.2712 -2.9362 1.0708 39 1 0.7688 -2.4132 1.9675 40 1 4.1581 -0.8077 4.8515 41 1 3.5896 -3.0407 8.1156 42 1 2.3987 -2.2739 7.0208 43 1 4.9168 2.3365 9.2094 44 1 5.1967 0.2982 6.9922 45 1 5.7588 -0.5151 8.4794 46 1 7.3041 -0.8339 5.9541 47 1 0.7449 -0.5395 3.0873 48 1 2.2301 0.5229 3.1374 49 1 4.0524 -0.0898 2.0401 50 1 4.0550 -1.6525 1.0939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084106979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:25 Heat of formation + Delta-G solvation = 27.446675 kcal Electronic energy + Delta-G solvation = -28727.854896 eV Core-core repulsion = 24952.076485 eV Total energy + Delta-G solvation = -3775.778411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15237 -39.20601 -37.57085 -36.05858 -35.06648 -33.61100 -31.63013 -28.60576 -27.62934 -27.60748 -27.25714 -25.48962 -25.41603 -25.32435 -24.22206 -21.88128 -20.43750 -19.86181 -19.20876 -17.63646 -17.11816 -16.76329 -16.52537 -15.75269 -14.78152 -14.72939 -14.59090 -14.37279 -14.33684 -14.18875 -14.06667 -13.86648 -13.50096 -12.99670 -12.72859 -12.49163 -12.46139 -12.41170 -12.00131 -11.85525 -11.50762 -11.45058 -11.35087 -11.25747 -11.15013 -10.98922 -10.88822 -10.86656 -10.83733 -10.75606 -10.22089 -10.13001 -10.07844 -10.02783 -9.85866 -9.39279 -9.29040 -8.78399 -8.48838 -6.91808 -5.79540 -3.12882 2.83251 3.35707 3.41575 3.43004 3.47101 4.09215 4.19021 4.33858 4.40580 4.43912 4.57784 4.64725 4.68046 4.95704 4.97492 5.08072 5.23192 5.36859 5.41460 5.45604 5.48223 5.50257 5.59722 5.62057 5.63225 5.65273 5.73340 5.74506 5.75861 5.82002 5.88094 5.89862 5.91827 5.98120 5.98249 6.11626 6.20568 6.21180 6.25709 6.38675 6.45574 6.59228 7.02338 7.30142 7.42021 7.69127 8.00309 8.07098 8.15130 8.64003 9.12890 9.72935 10.36957 11.32278 Molecular weight = 322.20amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.003621 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.517778 B = 7731.349691 C = 8772.130633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.005 4.005 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.108 4.108 6 C -0.087 4.087 7 C -0.158 4.158 8 C 0.573 3.427 9 O -0.550 6.550 10 N -0.683 5.683 11 C 0.140 3.860 12 H 0.093 0.907 13 C 0.123 3.877 14 N -0.600 5.600 15 C -0.226 4.226 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.924 5.924 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.150 3.850 24 C 0.064 3.936 25 H 0.067 0.933 26 O -0.563 6.563 27 C -0.099 4.099 28 C -0.095 4.095 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.408 0.592 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.252 0.748 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.377 0.623 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -2.346 -17.661 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.005 4.005 3 C -0.198 4.198 4 C -0.197 4.197 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.161 4.161 8 C 0.358 3.642 9 O -0.428 6.428 10 N -0.331 5.331 11 C 0.034 3.966 12 H 0.111 0.889 13 C -0.004 4.004 14 N -0.328 5.328 15 C -0.354 4.354 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.025 3.975 24 C 0.004 3.996 25 H 0.085 0.915 26 O -0.368 6.368 27 C -0.136 4.136 28 C -0.133 4.133 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.242 0.758 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.224 0.776 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.077 -3.263 -17.758 18.174 hybrid contribution 0.060 1.308 1.151 1.743 sum -2.017 -1.955 -16.607 16.843 Atomic orbital electron populations 1.21826 0.94075 1.02012 1.01862 1.19518 0.95202 0.94502 0.91272 1.21832 1.01306 0.94791 1.01882 1.21821 1.01240 1.00322 0.96310 1.24345 0.96502 0.96200 0.93738 1.23740 0.99115 0.95472 0.94135 1.23766 0.99684 0.98309 0.94387 1.18581 0.77825 0.85890 0.81912 1.90658 1.58073 1.16609 1.77497 1.45398 1.50941 1.15526 1.21250 1.22223 0.92865 0.96150 0.85338 0.88907 1.22054 0.97086 0.89237 0.92006 1.44310 1.09988 1.15936 1.62520 1.19072 0.93815 0.97485 1.25027 0.90342 1.24774 0.96765 0.97798 1.00992 1.69927 1.15493 1.21547 1.50238 0.86101 0.79567 0.80455 0.79553 1.21601 1.20676 1.21664 1.21867 0.85818 0.93182 0.96664 1.23563 0.90177 0.97317 0.88564 0.91534 1.86408 1.39972 1.76274 1.34105 1.24533 0.99053 0.95802 0.94250 1.24045 0.95251 0.99475 0.94504 0.92341 0.92503 0.92500 0.92416 0.92535 0.92290 0.92513 0.92495 0.92482 0.90878 0.90735 0.75753 0.94977 0.93243 0.93750 0.92459 0.93526 0.77603 0.90589 0.90125 0.90199 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 2 C 0.00 -0.04 1.02 -154.51 -0.16 -0.20 16 3 C -0.14 -1.17 8.47 37.16 0.31 -0.86 16 4 C -0.14 -1.09 8.47 37.16 0.31 -0.77 16 5 C -0.11 -1.14 1.67 -169.84 -0.28 -1.43 16 6 C -0.09 -1.07 7.78 -26.71 -0.21 -1.28 16 7 C -0.16 -2.27 3.36 -172.25 -0.58 -2.84 16 8 C 0.57 10.30 7.94 -10.99 -0.09 10.21 16 9 O -0.55 -11.50 16.74 5.56 0.09 -11.41 16 10 N -0.68 -12.32 4.81 -51.62 -0.25 -12.57 16 11 C 0.14 2.64 3.31 -65.66 -0.22 2.43 16 12 H 0.09 1.72 7.54 -51.93 -0.39 1.33 16 13 C 0.12 2.62 6.95 -2.41 -0.02 2.60 16 14 N -0.60 -14.78 3.39 -169.93 -0.58 -15.35 16 15 C -0.23 -6.15 10.28 -15.06 -0.15 -6.31 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.01 10.31 55.49 0.57 -25.43 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.15 3.39 5.13 -3.06 -0.02 3.38 16 24 C 0.06 1.15 4.12 -24.89 -0.10 1.05 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 O -0.56 -9.09 12.67 -35.23 -0.45 -9.54 16 27 C -0.10 -1.25 7.95 -24.72 -0.20 -1.45 16 28 C -0.10 -1.12 7.84 -25.98 -0.20 -1.32 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 39 H 0.07 0.93 7.91 -51.93 -0.41 0.51 16 40 H 0.41 7.33 8.39 -40.82 -0.34 6.99 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.43 7.30 -51.93 -0.38 1.05 16 45 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 46 H 0.38 4.70 9.11 45.56 0.42 5.11 16 47 H 0.08 0.98 7.91 -51.93 -0.41 0.56 16 48 H 0.08 1.03 7.97 -51.93 -0.41 0.62 16 49 H 0.08 0.92 7.97 -51.93 -0.41 0.50 16 50 H 0.07 0.83 7.93 -51.93 -0.41 0.41 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -31.07 398.35 -9.18 -40.25 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.18 Total: 9.29 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.37 Total: 2.06 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.25 Total: -53.36 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.35 Total: -20.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.07 -9.18 -40.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084106979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.696 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds