Wall clock time and date at job start Tue Mar 31 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34630 * 116.99723 * 2 1 4 4 O 1.21511 * 120.00529 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99975 * 180.02562 * 3 2 1 6 6 N 1.40097 * 119.99801 * 0.02562 * 5 3 2 7 7 C 1.34777 * 120.00212 * 179.97438 * 6 5 3 8 8 O 1.21368 * 119.99979 * 0.02562 * 7 6 5 9 9 C 1.49316 * 120.00577 * 179.97438 * 7 6 5 10 10 O 1.21397 * 119.99316 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00577 * 180.02562 * 9 7 6 12 12 C 1.39741 * 120.00148 * 175.49542 * 11 9 7 13 13 C 1.38998 * 120.00457 * 35.14622 * 12 11 9 14 14 C 1.37970 * 119.99167 * 180.02562 * 13 12 11 15 15 C 1.38942 * 120.00394 * 359.97438 * 14 13 12 16 16 O 1.35762 * 119.98806 * 179.97438 * 15 14 13 17 17 C 1.34801 * 117.00365 * 5.35234 * 16 15 14 18 18 H 1.07999 * 119.99698 * 354.95831 * 17 16 15 19 19 C 1.38643 * 120.00180 * 174.95867 * 17 16 15 20 20 N 1.31568 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00176 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47125 * 90.00129 * 21 19 17 23 23 H 1.48495 * 109.47005 * 210.00240 * 21 19 17 24 24 H 1.48496 * 109.46715 * 330.00044 * 21 19 17 25 25 C 1.38934 * 120.01537 * 0.26197 * 15 14 13 26 26 C 1.37968 * 120.00686 * 359.48079 * 25 15 14 27 27 H 1.08998 * 109.46592 * 299.99507 * 1 2 3 28 28 H 1.08997 * 109.47250 * 60.00160 * 1 2 3 29 29 H 1.09006 * 109.46829 * 180.02562 * 1 2 3 30 30 H 0.97002 * 120.00274 * 179.97438 * 5 3 2 31 31 H 0.96997 * 120.00135 * 0.02562 * 6 5 3 32 32 H 0.96995 * 119.99454 * 355.49771 * 11 9 7 33 33 H 1.08001 * 120.00368 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.99816 * 179.97438 * 14 13 12 35 35 H 0.96998 * 120.00062 * 180.02562 * 20 19 17 36 36 H 1.07999 * 119.99599 * 179.74641 * 25 15 14 37 37 H 1.07994 * 120.00383 * 180.23674 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 7 4.1722 0.0952 -0.0016 7 6 5.5181 0.1657 -0.0027 8 8 6.0691 1.2471 -0.0022 9 6 6.3314 -1.0865 -0.0032 10 8 5.7802 -2.1681 -0.0023 11 7 7.6774 -1.0160 -0.0038 12 6 8.4383 -2.1842 0.0908 13 6 7.9938 -3.3541 -0.5142 14 6 8.7450 -4.5075 -0.4202 15 6 9.9460 -4.4995 0.2785 16 8 10.6847 -5.6348 0.3711 17 6 10.2543 -6.7039 -0.3282 18 1 9.3163 -6.6582 -0.8616 19 6 11.0157 -7.8620 -0.3627 20 7 12.1582 -7.9178 0.2874 21 14 10.4197 -9.3432 -1.3324 22 1 10.9308 -9.2619 -2.7243 23 1 10.9195 -10.5869 -0.6934 24 1 8.9349 -9.3580 -1.3504 25 6 10.3880 -3.3316 0.8874 26 6 9.6399 -2.1765 0.7893 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8495 2.1345 -0.0009 31 1 3.7319 -0.7690 -0.0024 32 1 8.1177 -0.1543 -0.0697 33 1 7.0601 -3.3604 -1.0569 34 1 8.3996 -5.4166 -0.8899 35 1 12.6910 -8.7279 0.2630 36 1 11.3195 -3.3268 1.4339 37 1 9.9854 -1.2677 1.2594 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320249448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:26 Heat of formation + Delta-G solvation = -95.918450 kcal Electronic energy + Delta-G solvation = -25562.143067 eV Core-core repulsion = 21308.089949 eV Total energy + Delta-G solvation = -4254.053119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42940 -40.77556 -39.47880 -38.58266 -37.13471 -36.77762 -36.38763 -34.18065 -32.27762 -31.72842 -30.33377 -28.48845 -28.04282 -25.68010 -24.80668 -22.77614 -22.50294 -21.70091 -20.51899 -19.79214 -19.00045 -18.08129 -17.77058 -17.25289 -17.22792 -16.99554 -16.53915 -16.20121 -15.86139 -14.78389 -14.69841 -14.57690 -14.50893 -14.19834 -13.83824 -13.73076 -13.66600 -13.01627 -12.70240 -12.64777 -12.10261 -12.08656 -11.86383 -11.67397 -11.57028 -11.41307 -11.37002 -11.09105 -10.84688 -10.49084 -9.94540 -9.87326 -9.31626 -9.11207 -8.80491 -8.33062 -7.09553 -6.52819 -4.10132 0.89519 0.94382 1.98386 2.05548 2.10136 2.21303 2.92462 3.01208 3.10642 3.11265 3.15590 3.91063 4.04791 4.39885 4.46543 4.65484 4.75056 5.01479 5.04244 5.16161 5.49214 5.55827 5.60801 5.71559 5.91365 6.03416 6.15429 6.25576 6.46549 6.59268 6.73064 6.85152 6.91710 7.18221 7.20335 7.32193 7.40154 7.60030 7.71476 7.90168 7.92464 8.92564 9.60096 10.64548 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002196 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.116274 B =12748.275180 C =13896.828256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.659 3.341 4 O -0.552 6.552 5 N -0.490 5.490 6 N -0.495 5.495 7 C 0.514 3.486 8 O -0.516 6.516 9 C 0.509 3.491 10 O -0.502 6.502 11 N -0.615 5.615 12 C 0.017 3.983 13 C -0.058 4.058 14 C -0.222 4.222 15 C 0.151 3.849 16 O -0.171 6.171 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.178 4.178 26 C -0.081 4.081 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.455 0.545 31 H 0.446 0.554 32 H 0.416 0.584 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.271 0.729 36 H 0.124 0.876 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 14.329 -1.247 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.412 3.588 4 O -0.436 6.436 5 N -0.252 5.252 6 N -0.249 5.249 7 C 0.295 3.705 8 O -0.390 6.390 9 C 0.288 3.712 10 O -0.377 6.377 11 N -0.261 5.261 12 C -0.075 4.075 13 C -0.078 4.078 14 C -0.242 4.242 15 C 0.096 3.904 16 O -0.074 6.074 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.198 4.198 26 C -0.101 4.101 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.304 0.696 31 H 0.291 0.709 32 H 0.252 0.748 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.057 14.246 -1.060 22.248 hybrid contribution -0.287 -0.237 -0.495 0.619 sum -17.343 14.009 -1.554 22.348 Atomic orbital electron populations 1.23343 0.73029 1.04283 1.03117 1.86219 1.25324 1.30118 1.86639 1.17765 0.81466 0.83069 0.76524 1.91134 1.61426 1.35069 1.56004 1.43842 0.99797 1.02476 1.79040 1.44617 1.03528 1.02128 1.74642 1.20477 0.81173 0.90912 0.77975 1.90808 1.70781 1.29199 1.48191 1.19338 0.83604 0.88016 0.80222 1.90827 1.70992 1.28361 1.47541 1.42730 1.04235 1.10267 1.68857 1.17194 0.95279 0.86491 1.08543 1.20839 0.98975 0.91259 0.96694 1.21091 0.96763 0.99127 1.07258 1.19462 0.90382 0.87614 0.92906 1.83967 1.46705 1.16334 1.60378 1.21368 1.06685 0.89433 1.29284 0.88835 1.25322 0.95269 0.98554 0.97360 1.70039 1.11706 1.28620 1.38939 0.85686 0.79108 0.79430 0.79106 1.19801 1.20215 1.19069 1.20007 1.02209 0.90525 1.07043 1.20381 0.93974 0.97776 0.97996 0.91389 0.91386 0.87262 0.69646 0.70939 0.74773 0.85553 0.84961 0.91876 0.85774 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -2.98 9.64 -40.30 -0.39 -3.36 16 3 C 0.66 6.33 8.81 54.05 0.48 6.81 16 4 O -0.55 -6.61 16.97 -19.28 -0.33 -6.94 16 5 N -0.49 -4.30 6.26 27.59 0.17 -4.13 16 6 N -0.49 -4.49 6.26 30.87 0.19 -4.30 16 7 C 0.51 5.52 8.00 -11.65 -0.09 5.43 16 8 O -0.52 -6.15 16.32 5.48 0.09 -6.06 16 9 C 0.51 6.49 7.73 -11.65 -0.09 6.40 16 10 O -0.50 -7.50 13.91 5.46 0.08 -7.43 16 11 N -0.62 -7.95 5.32 -10.27 -0.05 -8.01 16 12 C 0.02 0.28 6.30 -83.69 -0.53 -0.25 16 13 C -0.06 -1.06 8.69 -39.40 -0.34 -1.40 16 14 C -0.22 -4.67 9.16 -39.42 -0.36 -5.03 16 15 C 0.15 3.47 6.65 -39.06 -0.26 3.21 16 16 O -0.17 -4.68 9.75 0.09 0.00 -4.68 16 17 C -0.39 -10.56 9.48 30.88 0.29 -10.27 16 18 H 0.09 2.33 5.19 -52.49 -0.27 2.06 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.43 13.67 55.48 0.76 -23.67 16 21 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.18 -3.48 9.98 -39.42 -0.39 -3.87 16 26 C -0.08 -1.32 9.96 -39.40 -0.39 -1.71 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.45 3.72 8.10 -182.60 -1.48 2.24 16 31 H 0.45 3.71 7.42 -182.60 -1.36 2.35 16 32 H 0.42 4.37 8.30 -40.82 -0.34 4.03 16 33 H 0.13 2.21 6.22 -52.49 -0.33 1.88 16 34 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -32.67 339.50 -5.42 -38.09 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.32 Total: 8.85 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.72 Total: 1.63 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 1.07 Total: -40.11 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.55 Total: -28.47 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.67 -5.42 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320249448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.831 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds