Wall clock time and date at job start Tue Mar 31 2020 04:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47068 * 239.99914 * 3 2 1 5 5 H 1.48503 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47204 * 119.99636 * 3 2 1 7 7 C 1.38813 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99842 * 197.01540 * 7 2 1 9 9 N 1.36936 * 119.99966 * 17.02349 * 7 2 1 10 10 C 1.47083 * 120.88274 * 206.58375 * 9 7 2 11 11 C 1.53232 * 108.52345 * 231.16205 * 10 9 7 12 12 N 1.46902 * 109.34105 * 306.16879 * 11 10 9 13 13 C 1.46896 * 111.00187 * 187.25570 * 12 11 10 14 14 C 1.53000 * 109.47318 * 170.00135 * 13 12 11 15 15 N 1.46494 * 109.47258 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99984 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00313 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99870 * 180.02562 * 16 15 14 19 19 C 1.56432 * 116.79265 * 297.54856 * 18 16 15 20 20 C 1.54661 * 103.24285 * 201.08937 * 19 18 16 21 21 N 1.49517 * 105.28213 * 359.32319 * 20 19 18 22 22 C 1.49525 * 105.92121 * 288.73291 * 21 20 19 23 23 C 1.54788 * 105.27789 * 71.30770 * 22 21 20 24 24 C 1.50464 * 102.04094 * 35.14615 * 21 20 19 25 25 C 1.46898 * 111.26700 * 63.10265 * 12 11 10 26 26 C 1.47085 * 120.88429 * 26.55883 * 9 7 2 27 27 H 0.97002 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.62820 * 111.44943 * 10 9 7 29 29 H 1.09001 * 109.78296 * 350.96820 * 10 9 7 30 30 H 1.08995 * 109.49422 * 186.21247 * 11 10 9 31 31 H 1.08995 * 109.49568 * 66.12427 * 11 10 9 32 32 H 1.08994 * 109.47305 * 49.99343 * 13 12 11 33 33 H 1.09009 * 109.47016 * 289.99683 * 13 12 11 34 34 H 1.08995 * 109.47321 * 59.99861 * 14 13 12 35 35 H 1.08999 * 109.46638 * 299.99597 * 14 13 12 36 36 H 0.96998 * 120.00147 * 359.97438 * 15 14 13 37 37 H 1.08997 * 110.67686 * 82.63822 * 19 18 16 38 38 H 1.08999 * 110.63665 * 319.52232 * 19 18 16 39 39 H 1.08996 * 110.28021 * 240.36320 * 20 19 18 40 40 H 1.09003 * 110.27685 * 118.26798 * 20 19 18 41 41 H 1.08999 * 110.28381 * 190.21521 * 22 21 20 42 42 H 1.08993 * 110.28172 * 312.31738 * 22 21 20 43 43 H 1.09000 * 110.70623 * 242.20861 * 23 22 21 44 44 H 1.09005 * 110.63199 * 119.07593 * 23 22 21 45 45 H 1.08998 * 111.90336 * 62.19158 * 24 21 20 46 46 H 1.08996 * 111.91207 * 188.33712 * 24 21 20 47 47 H 1.09002 * 109.49548 * 56.86327 * 25 12 11 48 48 H 1.09011 * 109.49086 * 176.93930 * 25 12 11 49 49 H 1.08997 * 109.62830 * 248.55280 * 26 9 7 50 50 H 1.08998 * 109.62522 * 9.12862 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3461 10 6 1.8308 -3.6610 0.1684 11 6 2.0022 -4.6201 -1.0143 12 7 0.7546 -4.6656 -1.7885 13 6 0.8181 -5.7007 -2.8289 14 6 -0.5694 -5.8904 -3.4450 15 7 -0.5059 -6.9222 -4.4830 16 6 -1.6175 -7.2601 -5.1662 17 8 -2.6702 -6.7096 -4.9221 18 6 -1.5523 -8.3220 -6.2336 19 6 -0.6337 -8.0282 -7.4653 20 6 -1.1915 -8.9720 -8.5563 21 7 -2.3152 -9.7100 -7.9020 22 6 -1.6773 -10.6538 -6.9335 23 6 -1.1350 -9.7611 -5.7912 24 6 -2.8887 -8.6619 -6.9873 25 6 0.4400 -3.3536 -2.3696 26 6 0.2045 -2.3426 -1.2425 27 1 -0.4850 0.8401 -0.0004 28 1 1.0918 -4.0629 0.8617 29 1 2.7848 -3.5376 0.6811 30 1 2.2361 -5.6177 -0.6426 31 1 2.8135 -4.2696 -1.6522 32 1 1.1511 -6.6398 -2.3872 33 1 1.5209 -5.3943 -3.6039 34 1 -0.9023 -4.9513 -3.8868 35 1 -1.2721 -6.1968 -2.6702 36 1 0.3361 -7.3623 -4.6785 37 1 0.4039 -8.2730 -7.2387 38 1 -0.7260 -6.9868 -7.7736 39 1 -0.4203 -9.6697 -8.8826 40 1 -1.5616 -8.3936 -9.4029 41 1 -2.4167 -11.3546 -6.5460 42 1 -0.8601 -11.1924 -7.4133 43 1 -0.0503 -9.8425 -5.7202 44 1 -1.6044 -10.0234 -4.8430 45 1 -3.2727 -7.8051 -7.5410 46 1 -3.6406 -9.0757 -6.3155 47 1 1.2731 -3.0208 -2.9888 48 1 -0.4591 -3.4327 -2.9810 49 1 -0.6907 -2.6177 -0.6849 50 1 0.0841 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690079607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:37 Heat of formation + Delta-G solvation = 24.666796 kcal Electronic energy + Delta-G solvation = -27711.015971 eV Core-core repulsion = 23967.409767 eV Total energy + Delta-G solvation = -3743.606204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49970 -39.23114 -38.16878 -35.46854 -34.01109 -31.72214 -31.14920 -31.04236 -29.96619 -28.76370 -28.48025 -25.96399 -23.57578 -22.95743 -22.78983 -22.34146 -21.34190 -21.13831 -19.54456 -19.11267 -17.29190 -16.85729 -16.54975 -16.24217 -15.79644 -15.47945 -15.13137 -14.77316 -14.49154 -14.26928 -13.71345 -13.66353 -13.59977 -13.45253 -13.28866 -13.03755 -12.89795 -12.67418 -12.57642 -12.12914 -11.87955 -11.68789 -11.67782 -11.46767 -11.33040 -11.14296 -11.05207 -10.74155 -10.73260 -10.49891 -10.33815 -10.07597 -10.02375 -9.76383 -9.64774 -9.49609 -9.16450 -8.51374 -7.92319 -6.68053 -5.78427 -3.19934 2.35465 2.86332 3.37821 3.38653 3.43844 3.44630 3.97848 4.04774 4.31916 4.40261 4.49949 4.56118 4.57941 4.64197 4.76111 4.92344 5.06202 5.09331 5.11227 5.19041 5.28559 5.35462 5.38729 5.38733 5.40337 5.46967 5.49262 5.58935 5.65343 5.79073 5.87493 5.91699 6.01373 6.03450 6.07934 6.17362 6.19193 6.27041 6.31119 6.51456 6.66330 6.90367 7.21622 7.28085 7.51159 7.61485 7.67693 7.79987 8.02445 8.42854 9.20498 9.83872 10.42344 11.30410 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.002157 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.272549 B =12979.347134 C =13289.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.046 3.954 14 C 0.120 3.880 15 N -0.723 5.723 16 C 0.550 3.450 17 O -0.529 6.529 18 C -0.132 4.132 19 C -0.136 4.136 20 C 0.013 3.987 21 N -0.467 5.467 22 C 0.013 3.987 23 C -0.135 4.135 24 C 0.040 3.960 25 C 0.031 3.969 26 C 0.178 3.822 27 H 0.255 0.745 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.026 0.974 48 H 0.064 0.936 49 H 0.028 0.972 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -21.474 -15.287 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.083 4.083 14 C -0.003 4.003 15 N -0.375 5.375 16 C 0.334 3.666 17 O -0.405 6.405 18 C -0.137 4.137 19 C -0.175 4.175 20 C -0.116 4.116 21 N -0.186 5.186 22 C -0.116 4.116 23 C -0.174 4.174 24 C -0.089 4.089 25 C -0.098 4.098 26 C 0.052 3.948 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.044 0.956 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.210 -21.366 -15.260 26.283 hybrid contribution 2.244 1.270 -0.017 2.578 sum 1.033 -20.096 -15.277 25.264 Atomic orbital electron populations 1.70020 1.05197 1.25648 1.53833 1.25036 0.95318 0.98377 1.01004 0.86360 0.78888 0.83395 0.78063 1.21139 1.21585 1.20882 1.19140 0.92548 0.84790 1.41861 0.91692 1.44122 1.34159 1.01252 1.52357 1.20969 0.97862 0.86497 0.92507 1.22626 0.89254 0.99510 0.96913 1.61872 1.34672 1.05773 1.23114 1.22186 0.94959 0.96941 0.94254 1.21418 0.98187 0.90936 0.89798 1.45930 1.11429 1.41345 1.38774 1.19336 0.83693 0.82344 0.81189 1.90750 1.29464 1.53733 1.66564 1.23828 0.99607 0.94989 0.95323 1.23264 0.98886 1.01417 0.93945 1.23613 0.94025 0.96514 0.97455 1.69993 1.19778 1.09888 1.18962 1.23639 0.99304 0.96264 0.92411 1.23231 1.01676 0.92326 1.00148 1.24346 0.94891 0.95523 0.94164 1.23009 0.98803 0.89199 0.98782 1.20869 0.88999 0.96568 0.88387 0.93507 0.95608 0.92548 0.91988 0.95357 0.90914 0.95045 0.90970 0.90325 0.76892 0.90463 0.90553 0.90200 0.89548 0.89551 0.90202 0.90458 0.90534 0.88867 0.88866 0.95607 0.91789 0.95426 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 11.15 55.49 0.62 -25.77 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.70 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -15.11 3.04 -172.01 -0.52 -15.63 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 11 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -9.08 4.63 -234.33 -1.08 -10.16 16 13 C 0.05 0.59 5.08 -3.83 -0.02 0.57 16 14 C 0.12 1.55 5.61 -4.04 -0.02 1.53 16 15 N -0.72 -7.39 5.56 -60.30 -0.33 -7.73 16 16 C 0.55 6.44 7.33 -10.98 -0.08 6.36 16 17 O -0.53 -8.54 16.56 5.56 0.09 -8.44 16 18 C -0.13 -1.11 1.40 -149.82 -0.21 -1.32 16 19 C -0.14 -0.90 6.03 -24.01 -0.14 -1.05 16 20 C 0.01 0.08 6.61 -1.49 -0.01 0.07 16 21 N -0.47 -3.69 6.94 -221.98 -1.54 -5.24 16 22 C 0.01 0.08 6.62 -1.42 -0.01 0.07 16 23 C -0.13 -0.86 6.06 -24.05 -0.15 -1.01 16 24 C 0.04 0.36 6.06 0.43 0.00 0.36 16 25 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 26 C 0.18 4.32 5.42 -3.60 -0.02 4.30 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 30 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 33 H 0.03 0.39 8.13 -51.92 -0.42 -0.03 16 34 H 0.07 1.07 6.40 -51.93 -0.33 0.74 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.40 2.93 8.47 -40.82 -0.35 2.58 16 37 H 0.08 0.40 7.82 -51.93 -0.41 -0.01 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.41 7.69 -51.93 -0.40 0.01 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.40 7.69 -51.93 -0.40 0.00 16 43 H 0.08 0.38 7.82 -51.93 -0.41 -0.03 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 1.15 6.16 -51.92 -0.32 0.83 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -32.16 383.29 -11.77 -43.93 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.79 Total: -0.58 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.95 Total: 7.16 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -2.86 Total: -64.54 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.16 -11.77 -43.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.595 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds