Wall clock time and date at job start Tue Mar 31 2020 04:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47068 * 239.99914 * 3 2 1 5 5 H 1.48503 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47204 * 119.99636 * 3 2 1 7 7 C 1.38813 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99842 * 197.01540 * 7 2 1 9 9 N 1.36936 * 119.99966 * 17.02349 * 7 2 1 10 10 C 1.47083 * 120.88274 * 206.58375 * 9 7 2 11 11 C 1.53232 * 108.52345 * 231.16205 * 10 9 7 12 12 N 1.46902 * 109.34105 * 306.16879 * 11 10 9 13 13 C 1.46896 * 111.00187 * 187.25570 * 12 11 10 14 14 C 1.53000 * 109.47318 * 170.00135 * 13 12 11 15 15 N 1.46494 * 109.47258 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99984 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00313 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99870 * 180.02562 * 16 15 14 19 19 C 1.56432 * 116.79265 * 297.54856 * 18 16 15 20 20 C 1.54661 * 103.24285 * 201.08937 * 19 18 16 21 21 N 1.49517 * 105.28213 * 359.32319 * 20 19 18 22 22 C 1.49525 * 105.92121 * 288.73291 * 21 20 19 23 23 C 1.54788 * 105.27789 * 71.30770 * 22 21 20 24 24 C 1.50464 * 102.04094 * 35.14615 * 21 20 19 25 25 C 1.46898 * 111.26700 * 63.10265 * 12 11 10 26 26 C 1.47085 * 120.88429 * 26.55883 * 9 7 2 27 27 H 0.97002 * 119.99906 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.62820 * 111.44943 * 10 9 7 29 29 H 1.09001 * 109.78296 * 350.96820 * 10 9 7 30 30 H 1.08995 * 109.49422 * 186.21247 * 11 10 9 31 31 H 1.08995 * 109.49568 * 66.12427 * 11 10 9 32 32 H 1.08994 * 109.47305 * 49.99343 * 13 12 11 33 33 H 1.09009 * 109.47016 * 289.99683 * 13 12 11 34 34 H 1.08995 * 109.47321 * 59.99861 * 14 13 12 35 35 H 1.08999 * 109.46638 * 299.99597 * 14 13 12 36 36 H 0.96998 * 120.00147 * 359.97438 * 15 14 13 37 37 H 1.08997 * 110.67686 * 82.63822 * 19 18 16 38 38 H 1.08999 * 110.63665 * 319.52232 * 19 18 16 39 39 H 1.08996 * 110.28021 * 240.36320 * 20 19 18 40 40 H 1.09003 * 110.27685 * 118.26798 * 20 19 18 41 41 H 1.08999 * 110.28381 * 190.21521 * 22 21 20 42 42 H 1.08993 * 110.28172 * 312.31738 * 22 21 20 43 43 H 1.09000 * 110.70623 * 242.20861 * 23 22 21 44 44 H 1.09005 * 110.63199 * 119.07593 * 23 22 21 45 45 H 1.08998 * 111.90336 * 62.19158 * 24 21 20 46 46 H 1.08996 * 111.91207 * 188.33712 * 24 21 20 47 47 H 1.09002 * 109.49548 * 56.86327 * 25 12 11 48 48 H 1.09011 * 109.49086 * 176.93930 * 25 12 11 49 49 H 1.08997 * 109.62830 * 248.55280 * 26 9 7 50 50 H 1.08998 * 109.62522 * 9.12862 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3461 10 6 1.8308 -3.6610 0.1684 11 6 2.0022 -4.6201 -1.0143 12 7 0.7546 -4.6656 -1.7885 13 6 0.8181 -5.7007 -2.8289 14 6 -0.5694 -5.8904 -3.4450 15 7 -0.5059 -6.9222 -4.4830 16 6 -1.6175 -7.2601 -5.1662 17 8 -2.6702 -6.7096 -4.9221 18 6 -1.5523 -8.3220 -6.2336 19 6 -0.6337 -8.0282 -7.4653 20 6 -1.1915 -8.9720 -8.5563 21 7 -2.3152 -9.7100 -7.9020 22 6 -1.6773 -10.6538 -6.9335 23 6 -1.1350 -9.7611 -5.7912 24 6 -2.8887 -8.6619 -6.9873 25 6 0.4400 -3.3536 -2.3696 26 6 0.2045 -2.3426 -1.2425 27 1 -0.4850 0.8401 -0.0004 28 1 1.0918 -4.0629 0.8617 29 1 2.7848 -3.5376 0.6811 30 1 2.2361 -5.6177 -0.6426 31 1 2.8135 -4.2696 -1.6522 32 1 1.1511 -6.6398 -2.3872 33 1 1.5209 -5.3943 -3.6039 34 1 -0.9023 -4.9513 -3.8868 35 1 -1.2721 -6.1968 -2.6702 36 1 0.3361 -7.3623 -4.6785 37 1 0.4039 -8.2730 -7.2387 38 1 -0.7260 -6.9868 -7.7736 39 1 -0.4203 -9.6697 -8.8826 40 1 -1.5616 -8.3936 -9.4029 41 1 -2.4167 -11.3546 -6.5460 42 1 -0.8601 -11.1924 -7.4133 43 1 -0.0503 -9.8425 -5.7202 44 1 -1.6044 -10.0234 -4.8430 45 1 -3.2727 -7.8051 -7.5410 46 1 -3.6406 -9.0757 -6.3155 47 1 1.2731 -3.0208 -2.9888 48 1 -0.4591 -3.4327 -2.9810 49 1 -0.6907 -2.6177 -0.6849 50 1 0.0841 -1.3449 -1.6647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690079607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:37 Heat of formation + Delta-G solvation = -1.177350 kcal Electronic energy + Delta-G solvation = -27712.136658 eV Core-core repulsion = 23967.409767 eV Total energy + Delta-G solvation = -3744.726891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 322.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15056 -40.23862 -39.58699 -36.87353 -35.47271 -33.36386 -31.98702 -31.66727 -31.62895 -30.04555 -29.09766 -27.61659 -25.14462 -24.33332 -23.55505 -23.43931 -22.52465 -21.74710 -20.88133 -20.29781 -18.73982 -17.99943 -17.43406 -17.19063 -16.84687 -16.46577 -16.29910 -16.10690 -15.86543 -15.57194 -15.32088 -15.07690 -14.94838 -14.68746 -14.25651 -14.13070 -13.78759 -13.77528 -13.23050 -13.15560 -13.00951 -12.86494 -12.73489 -12.61540 -12.57373 -12.41915 -12.30643 -12.24754 -12.05284 -11.87133 -11.67296 -11.57515 -11.43857 -11.25009 -10.96549 -10.59486 -10.18131 -10.05156 -9.31974 -8.70240 -7.88701 -5.33742 1.45644 1.45752 1.48148 1.55201 1.94868 2.49961 2.78813 3.05890 3.26779 3.42990 3.45166 3.66165 3.71885 3.83626 3.93079 4.05287 4.07616 4.15219 4.28187 4.30692 4.33325 4.43670 4.51381 4.51865 4.53661 4.61594 4.64279 4.69651 4.77786 4.80702 4.83878 4.90281 4.92345 4.94371 4.98223 5.02710 5.03221 5.14307 5.19142 5.31291 5.36254 5.48269 5.59762 5.65950 5.69715 6.11993 6.21245 6.35831 6.46697 7.11513 7.15530 7.82702 8.36913 9.18136 Molecular weight = 322.21amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.002157 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.272549 B =12979.347134 C =13289.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.264 4.264 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.056 3.944 14 C 0.129 3.871 15 N -0.706 5.706 16 C 0.548 3.452 17 O -0.582 6.582 18 C -0.133 4.133 19 C -0.128 4.128 20 C 0.014 3.986 21 N -0.480 5.480 22 C 0.013 3.987 23 C -0.126 4.126 24 C 0.035 3.965 25 C 0.050 3.950 26 C 0.185 3.815 27 H 0.250 0.750 28 H 0.014 0.986 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.029 0.971 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.023 0.977 48 H 0.074 0.926 49 H -0.005 1.005 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -23.912 -16.522 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.070 4.070 12 N -0.269 5.269 13 C -0.072 4.072 14 C 0.004 3.996 15 N -0.358 5.358 16 C 0.334 3.666 17 O -0.462 6.462 18 C -0.138 4.138 19 C -0.167 4.167 20 C -0.115 4.115 21 N -0.199 5.199 22 C -0.115 4.115 23 C -0.165 4.165 24 C -0.094 4.094 25 C -0.079 4.079 26 C 0.059 3.941 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.042 0.958 48 H 0.092 0.908 49 H 0.013 0.987 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.731 -23.864 -16.508 29.069 hybrid contribution 1.309 1.954 0.399 2.385 sum 3.040 -21.910 -16.108 27.364 Atomic orbital electron populations 1.70197 1.06766 1.25946 1.55469 1.25848 0.96077 1.01687 1.01378 0.85300 0.77494 0.79010 0.78399 1.20364 1.22159 1.19907 1.19519 0.92963 0.85924 1.40977 0.91184 1.44419 1.34127 1.02353 1.53016 1.21169 0.97569 0.85474 0.94250 1.22469 0.89043 1.00294 0.95237 1.61746 1.35090 1.05220 1.24800 1.22178 0.94843 0.96591 0.93625 1.21139 0.98043 0.90629 0.89774 1.45710 1.12056 1.40436 1.37624 1.19918 0.83035 0.82302 0.81331 1.90730 1.31482 1.55738 1.68221 1.23710 0.99883 0.95220 0.94978 1.23270 0.99723 1.00957 0.92787 1.23675 0.93971 0.96762 0.97090 1.69968 1.20921 1.09860 1.19187 1.23711 0.99846 0.95889 0.92078 1.23237 1.03159 0.90311 0.99787 1.24273 0.95328 0.95509 0.94317 1.22602 0.99260 0.89482 0.96545 1.20599 0.87861 0.96352 0.89326 0.94107 0.96778 0.91797 0.88016 0.95261 0.87827 0.93467 0.93255 0.92229 0.74653 0.87916 0.91651 0.88052 0.89899 0.89705 0.88092 0.87879 0.91257 0.90389 0.90130 0.95829 0.90780 0.98693 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 11.15 21.65 0.24 -56.66 16 2 C -0.05 -3.11 4.94 84.86 0.42 -2.69 16 3 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.26 -14.68 9.63 84.03 0.81 -13.88 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -31.65 3.04 -698.13 -2.12 -33.77 16 10 C 0.14 5.82 6.69 86.35 0.58 6.40 16 11 C 0.06 1.85 5.62 86.38 0.49 2.34 16 12 N -0.54 -17.60 4.63 -895.27 -4.14 -21.75 16 13 C 0.06 1.25 5.08 86.30 0.44 1.68 16 14 C 0.13 3.16 5.61 86.38 0.48 3.64 16 15 N -0.71 -12.94 5.56 -463.08 -2.57 -15.51 16 16 C 0.55 12.45 7.33 87.66 0.64 13.09 16 17 O -0.58 -19.41 16.56 -3.02 -0.05 -19.46 16 18 C -0.13 -2.02 1.40 -49.14 -0.07 -2.09 16 19 C -0.13 -1.36 6.03 32.36 0.20 -1.17 16 20 C 0.01 0.14 6.61 86.36 0.57 0.71 16 21 N -0.48 -6.84 6.94 -856.20 -5.94 -12.78 16 22 C 0.01 0.13 6.62 86.40 0.57 0.70 16 23 C -0.13 -1.24 6.06 32.33 0.20 -1.04 16 24 C 0.04 0.64 6.06 87.06 0.53 1.16 16 25 C 0.05 1.95 5.46 86.38 0.47 2.42 16 26 C 0.18 9.31 5.42 86.35 0.47 9.78 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 30 H 0.10 2.47 7.99 -2.39 -0.02 2.45 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.77 7.97 -2.39 -0.02 1.75 16 33 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 34 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.42 4.51 8.47 -92.71 -0.79 3.73 16 37 H 0.10 0.59 7.82 -2.39 -0.02 0.57 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.63 7.69 -2.39 -0.02 0.62 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 0.59 7.69 -2.39 -0.02 0.57 16 43 H 0.10 0.51 7.82 -2.39 -0.02 0.49 16 44 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 2.70 6.16 -2.38 -0.01 2.68 16 49 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.06 3.13 6.12 -2.39 -0.01 3.12 16 Total: -1.00 -73.64 383.29 -5.64 -79.28 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.13 Total: 12.26 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.79 Total: 21.06 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -14.54 Total: -140.46 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.64 -5.64 -79.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690079607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.103 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds