Wall clock time and date at job start Tue Mar 31 2020 04:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47313 * 2 1 4 4 C 1.53005 * 109.47133 * 240.00083 * 2 1 3 5 5 N 1.46503 * 109.46692 * 64.99814 * 4 2 1 6 6 C 1.36939 * 119.99568 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99652 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99712 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47136 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47250 * 120.00175 * 10 8 6 13 13 H 1.48499 * 109.47053 * 240.00133 * 10 8 6 14 14 C 1.52999 * 109.47455 * 120.00087 * 2 1 3 15 15 N 1.46495 * 109.47113 * 295.00178 * 14 2 1 16 16 C 1.34786 * 120.00176 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99471 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00047 * 180.02562 * 16 15 14 19 19 H 1.08999 * 107.91479 * 63.38478 * 18 16 15 20 20 C 1.51015 * 108.05024 * 306.81250 * 18 16 15 21 21 C 1.54224 * 110.78811 * 166.04217 * 20 18 16 22 22 C 1.51810 * 106.67133 * 79.18539 * 21 20 18 23 23 N 1.30314 * 127.92171 * 114.44267 * 22 21 20 24 24 N 1.29269 * 107.46443 * 179.74718 * 23 22 21 25 25 N 1.29147 * 109.43045 * 359.97438 * 24 23 22 26 26 N 1.28393 * 108.35895 * 359.97438 * 25 24 23 27 27 C 1.47662 * 127.74320 * 180.02562 * 26 25 24 28 28 C 1.50876 * 108.05373 * 180.02562 * 18 16 15 29 29 H 1.08999 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46555 * 299.99654 * 1 2 3 31 31 H 1.08991 * 109.47427 * 59.99742 * 1 2 3 32 32 H 1.09003 * 109.47012 * 184.99914 * 4 2 1 33 33 H 1.09001 * 109.46919 * 305.00463 * 4 2 1 34 34 H 0.96998 * 120.00079 * 0.02562 * 5 4 2 35 35 H 0.97002 * 119.99865 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47470 * 174.99989 * 14 2 1 37 37 H 1.09007 * 109.47023 * 54.99882 * 14 2 1 38 38 H 0.97004 * 120.00639 * 359.97438 * 15 14 2 39 39 H 1.08998 * 109.19586 * 286.47925 * 20 18 16 40 40 H 1.08995 * 109.19682 * 45.76816 * 20 18 16 41 41 H 1.08999 * 110.08306 * 319.92196 * 21 20 18 42 42 H 1.09001 * 110.10974 * 198.46221 * 21 20 18 43 43 H 1.08995 * 109.91627 * 5.21784 * 27 26 25 44 44 H 1.08997 * 109.91458 * 126.39747 * 27 26 25 45 45 H 1.09001 * 109.13285 * 73.81396 * 28 18 16 46 46 H 1.09008 * 109.12826 * 314.71223 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0019 -0.4202 -3.6856 7 1 2.5630 -1.3375 -3.7865 8 6 1.6351 0.2971 -4.8160 9 7 0.9518 1.4152 -4.6930 10 14 2.1112 -0.3248 -6.5119 11 1 2.8701 -1.5942 -6.3786 12 1 0.8845 -0.5639 -7.3139 13 1 2.9571 0.6891 -7.1914 14 6 2.0401 -0.7212 1.2492 15 7 1.6525 0.0353 2.4423 16 6 1.9957 -0.4137 3.6660 17 8 2.6250 -1.4443 3.7792 18 6 1.5965 0.3643 4.8934 19 1 0.5078 0.3750 4.9441 20 6 2.0703 1.7876 4.7198 21 6 1.4066 2.7158 5.7573 22 6 2.1576 2.5183 7.0618 23 7 2.8904 3.3843 7.7030 24 7 3.3373 2.8019 8.7671 25 7 2.8998 1.5875 8.8081 26 7 2.1701 1.3853 7.7713 27 6 1.4595 0.1472 7.3936 28 6 2.1144 -0.3733 6.1034 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1264 -0.7994 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.1488 0.8595 -2.3517 35 1 0.6958 1.9165 -5.4829 36 1 3.1264 -0.7995 1.2055 37 1 1.6055 -1.7199 1.2951 38 1 1.1489 0.8594 2.3518 39 1 3.1525 1.8230 4.8448 40 1 1.8146 2.1307 3.7173 41 1 0.3589 2.4442 5.8864 42 1 1.4859 3.7544 5.4360 43 1 1.5591 -0.5945 8.1860 44 1 0.4060 0.3633 7.2160 45 1 3.1939 -0.2378 6.1694 46 1 1.8947 -1.4355 5.9953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:40 Heat of formation + Delta-G solvation = 79.035060 kcal Electronic energy + Delta-G solvation = -26897.695149 eV Core-core repulsion = 23052.906186 eV Total energy + Delta-G solvation = -3844.788963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.69160 -40.61625 -37.88741 -36.86708 -35.44152 -34.51885 -33.12568 -32.58537 -31.72182 -30.12313 -28.14389 -26.52446 -25.61637 -25.16794 -24.01782 -22.86267 -21.99489 -21.57030 -20.56916 -19.86236 -18.32643 -17.78831 -17.27341 -16.91079 -16.40325 -15.95280 -15.70527 -15.05147 -14.87684 -14.58178 -14.47488 -14.07728 -13.87587 -13.71301 -13.48522 -13.12075 -13.06457 -12.72507 -12.58131 -12.45378 -12.41229 -12.27498 -12.14548 -11.79053 -11.53810 -11.41979 -11.22343 -11.14058 -10.99155 -10.79468 -10.66325 -10.53727 -10.42133 -10.11834 -9.95902 -9.73137 -9.22771 -8.93975 -6.98519 -5.82870 -3.11440 0.91704 1.56466 1.89285 2.30609 2.82713 3.38165 3.39637 3.45864 3.47717 3.67471 3.81956 3.88494 4.07882 4.34440 4.37020 4.41490 4.53867 4.61802 4.69506 4.74821 4.96272 4.96719 5.09610 5.14053 5.14953 5.22362 5.26715 5.35523 5.44085 5.49641 5.52026 5.68741 5.79268 5.84116 5.86471 6.00124 6.12386 6.26796 6.32791 6.55817 6.68116 6.77147 7.24109 7.65806 7.93191 8.26619 8.36240 9.47805 10.04231 10.38856 11.40100 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.001987 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.262146 B =14085.621491 C =14528.585993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.125 3.875 15 N -0.722 5.722 16 C 0.512 3.488 17 O -0.539 6.539 18 C -0.113 4.113 19 H 0.104 0.896 20 C -0.118 4.118 21 C -0.035 4.035 22 C 0.180 3.820 23 N -0.300 5.300 24 N -0.084 5.084 25 N -0.093 5.093 26 N -0.303 5.303 27 C 0.115 3.885 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -0.480 24.709 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.002 3.998 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.416 6.416 18 C -0.135 4.135 19 H 0.122 0.878 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.099 4.099 23 N -0.149 5.149 24 N -0.078 5.078 25 N -0.079 5.079 26 N -0.106 5.106 27 C -0.005 4.005 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.101 0.899 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.082 -0.941 25.731 25.932 hybrid contribution -0.726 -0.064 -1.684 1.835 sum -3.807 -1.006 24.047 24.367 Atomic orbital electron populations 1.21792 0.94616 1.01955 1.01501 1.21558 0.96720 1.00514 0.94178 0.90490 1.20576 0.96630 0.94218 0.85385 1.42337 1.66945 1.27668 1.00586 1.19277 1.28678 1.05463 0.83621 0.91094 1.24740 1.00984 0.97395 0.97906 1.69659 1.43590 1.16571 1.28436 0.86110 0.77613 0.77864 0.84568 1.20533 1.21857 1.21840 1.21459 1.00247 0.95287 0.82833 1.46109 1.57369 1.27868 1.05981 1.20422 0.79613 0.85623 0.84606 1.90733 1.39726 1.24560 1.86564 1.20761 1.03325 0.95398 0.93970 0.87793 1.21546 1.02253 0.91773 1.00082 1.20837 0.97742 1.03502 0.85421 1.26027 1.00966 0.83659 0.99203 1.74984 1.11730 1.25444 1.02731 1.78893 1.17989 0.97835 1.13043 1.78868 1.07499 1.14366 1.07148 1.48684 1.33099 1.13700 1.15132 1.22917 0.96260 0.81997 0.99336 1.21591 1.02078 1.02206 0.90187 0.92808 0.93967 0.91074 0.96146 0.96007 0.78211 0.93544 0.91261 0.91218 0.76385 0.90241 0.88672 0.88069 0.86465 0.85942 0.86876 0.89865 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.94 37.16 0.33 -1.47 16 2 C -0.11 -1.50 2.46 -90.62 -0.22 -1.72 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.16 2.98 5.65 -4.04 -0.02 2.95 16 5 N -0.73 -17.53 5.33 -59.90 -0.32 -17.85 16 6 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.13 1.45 5.06 -4.04 -0.02 1.43 16 15 N -0.72 -6.12 5.02 -60.30 -0.30 -6.43 16 16 C 0.51 4.52 7.12 -10.98 -0.08 4.45 16 17 O -0.54 -7.08 15.54 5.56 0.09 -7.00 16 18 C -0.11 -0.51 1.98 -93.84 -0.19 -0.70 16 19 H 0.10 0.18 7.69 -51.93 -0.40 -0.22 16 20 C -0.12 -0.49 4.90 -27.09 -0.13 -0.63 16 21 C -0.03 -0.12 6.03 -26.70 -0.16 -0.29 16 22 C 0.18 1.43 7.09 -156.72 -1.11 0.31 16 23 N -0.30 -3.51 12.37 32.63 0.40 -3.11 16 24 N -0.08 -1.10 13.45 60.32 0.81 -0.29 16 25 N -0.09 -1.03 13.36 60.35 0.81 -0.22 16 26 N -0.30 -2.29 3.36 -57.16 -0.19 -2.49 16 27 C 0.12 0.38 6.74 -3.01 -0.02 0.36 16 28 C -0.12 -0.60 4.48 -27.40 -0.12 -0.72 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.40 7.18 -51.93 -0.37 0.03 16 31 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.55 6.85 -40.82 -0.28 9.27 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 2.40 6.44 -40.82 -0.26 2.14 16 39 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 40 H 0.09 0.29 6.60 -51.93 -0.34 -0.06 16 41 H 0.10 0.09 7.90 -51.93 -0.41 -0.32 16 42 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.11 0.04 7.88 -51.93 -0.41 -0.37 16 45 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.11 0.59 7.41 -51.92 -0.38 0.20 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -36.25 370.71 -6.40 -42.66 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.99 Total: 2.05 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.99 Total: -3.18 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 1.93 Total: -57.09 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.25 -6.40 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.693 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds