Wall clock time and date at job start Tue Mar 31 2020 04:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 15 15 N 1.46501 * 109.47600 * 295.00248 * 14 2 1 16 16 C 1.34773 * 120.00280 * 179.97438 * 15 14 2 17 17 O 1.21276 * 119.99736 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00036 * 179.97438 * 16 15 14 19 19 H 1.08999 * 107.91006 * 63.39706 * 18 16 15 20 20 C 1.51015 * 108.05413 * 180.02562 * 18 16 15 21 21 C 1.53681 * 110.87142 * 193.87809 * 20 18 16 22 22 C 1.51808 * 106.94059 * 280.97803 * 21 20 18 23 23 N 1.30316 * 127.91663 * 245.54700 * 22 21 20 24 24 N 1.29268 * 107.46316 * 180.02562 * 23 22 21 25 25 N 1.29148 * 109.43391 * 359.97438 * 24 23 22 26 26 N 1.28401 * 108.35497 * 0.02562 * 25 24 23 27 27 C 1.47656 * 127.74350 * 179.97438 * 26 25 24 28 28 C 1.50878 * 108.05784 * 306.82085 * 18 16 15 29 29 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 30 30 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 31 31 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 33 33 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 35 35 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46810 * 55.00222 * 14 2 1 37 37 H 1.08998 * 109.47247 * 175.00091 * 14 2 1 38 38 H 0.97003 * 119.99573 * 359.97438 * 15 14 2 39 39 H 1.08998 * 109.19685 * 314.23341 * 20 18 16 40 40 H 1.08997 * 109.19733 * 73.51745 * 20 18 16 41 41 H 1.09000 * 109.96037 * 40.33444 * 21 20 18 42 42 H 1.08999 * 109.96138 * 161.53852 * 21 20 18 43 43 H 1.08995 * 109.91691 * 233.66711 * 27 26 25 44 44 H 1.08995 * 109.92104 * 354.76405 * 27 26 25 45 45 H 1.08999 * 109.12759 * 286.16933 * 28 18 16 46 46 H 1.08998 * 109.13041 * 45.27078 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4203 -3.6855 7 1 2.5631 -1.3377 -3.7863 8 6 1.6353 0.2967 -4.8160 9 7 0.9519 1.4149 -4.6931 10 14 2.1115 -0.3252 -6.5119 11 1 1.5180 -1.6687 -6.7310 12 1 1.6039 0.6140 -7.5441 13 1 3.5906 -0.4157 -6.6086 14 6 2.0400 -0.7211 1.2493 15 7 1.6524 0.0355 2.4424 16 6 1.9955 -0.4134 3.6660 17 8 2.6255 -1.4434 3.7793 18 6 1.5973 0.3653 4.8932 19 1 0.5086 0.3767 4.9443 20 6 2.1153 -0.3731 6.1045 21 6 1.4654 0.1610 7.3906 22 6 2.1819 1.4516 7.7452 23 7 2.9271 1.6937 8.7865 24 7 3.3369 2.9163 8.6944 25 7 2.8649 3.4476 7.6161 26 7 2.1498 2.5688 7.0118 27 6 1.4122 2.7216 5.7419 28 6 2.0715 1.7870 4.7194 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 1.1489 0.8593 -2.3517 35 1 0.6959 1.9162 -5.4830 36 1 1.6054 -1.7197 1.2952 37 1 3.1263 -0.7993 1.2057 38 1 1.1488 0.8596 2.3517 39 1 1.8877 -1.4341 6.0019 40 1 3.1957 -0.2435 6.1683 41 1 0.4073 0.3580 7.2187 42 1 1.5827 -0.5644 8.1957 43 1 0.3686 2.4405 5.8825 44 1 1.4753 3.7538 5.3976 45 1 3.1531 1.8212 4.8498 46 1 1.8231 2.1259 3.7136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:43 Heat of formation + Delta-G solvation = 79.390378 kcal Electronic energy + Delta-G solvation = -26908.303806 eV Core-core repulsion = 23063.530251 eV Total energy + Delta-G solvation = -3844.773555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.69544 -40.62523 -37.91272 -36.91725 -35.30887 -34.58916 -33.34893 -32.40470 -31.76787 -30.13530 -28.15345 -26.52618 -25.58425 -25.24578 -24.00570 -22.86507 -22.04241 -21.50303 -20.58433 -19.87070 -18.33705 -17.79356 -17.30479 -16.94155 -16.38578 -16.07878 -15.56883 -15.00897 -14.85900 -14.68503 -14.44232 -14.06577 -13.95380 -13.77107 -13.57117 -13.18310 -12.93280 -12.75927 -12.56874 -12.49878 -12.33313 -12.22043 -12.14193 -11.79262 -11.53351 -11.38080 -11.30616 -11.15209 -10.98678 -10.79064 -10.67282 -10.54309 -10.38896 -10.18158 -9.98091 -9.73190 -9.23967 -8.93784 -6.99621 -5.83417 -3.12174 0.91266 1.54150 1.89648 2.29605 2.82999 3.40163 3.41748 3.44732 3.45526 3.65079 3.78334 3.81096 4.10757 4.33039 4.37683 4.44052 4.53111 4.60320 4.69401 4.76620 4.90004 4.94620 5.07889 5.09512 5.15116 5.24600 5.26931 5.37162 5.42982 5.51144 5.63997 5.67485 5.79499 5.83035 5.85288 5.98729 6.10889 6.25562 6.31624 6.54370 6.66861 6.75945 7.22908 7.64024 7.93093 8.26394 8.35665 9.47038 10.03319 10.37991 11.39399 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.001998 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.656160 B =14008.067087 C =14474.070559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.535 6.535 18 C -0.113 4.113 19 H 0.104 0.896 20 C -0.105 4.105 21 C -0.036 4.036 22 C 0.183 3.817 23 N -0.301 5.301 24 N -0.083 5.083 25 N -0.093 5.093 26 N -0.305 5.305 27 C 0.117 3.883 28 C -0.135 4.135 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 0.803 23.860 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.296 3.704 17 O -0.411 6.411 18 C -0.134 4.134 19 H 0.122 0.878 20 C -0.144 4.144 21 C -0.077 4.077 22 C -0.096 4.096 23 N -0.150 5.150 24 N -0.077 5.077 25 N -0.078 5.078 26 N -0.108 5.108 27 C -0.004 4.004 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.104 0.896 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.111 0.803 24.588 24.797 hybrid contribution -0.721 0.076 -1.788 1.929 sum -3.832 0.879 22.801 23.137 Atomic orbital electron populations 1.21794 0.94616 1.01994 1.01457 1.21555 0.96715 1.00463 0.94214 0.90562 1.20575 0.96633 0.94237 0.85372 1.42318 1.66968 1.27662 1.00569 1.19184 1.28860 1.05495 0.83641 0.91198 1.24735 1.00941 0.97378 0.97903 1.69637 1.43480 1.16530 1.28685 0.86250 0.78057 0.77730 0.84050 1.21234 1.21673 1.21233 1.21459 1.00248 0.95326 0.82805 1.46123 1.57512 1.27851 1.06050 1.20430 0.79666 0.85756 0.84503 1.90738 1.39407 1.24476 1.86480 1.20775 1.03356 0.94604 0.94672 0.87795 1.21240 1.01598 1.01568 0.90025 1.20764 0.98264 0.88870 0.99758 1.26085 1.00533 0.93099 0.89866 1.74983 1.12230 1.08719 1.19065 1.78891 1.17850 1.01048 1.09907 1.78883 1.07440 1.17136 1.04364 1.48631 1.33425 1.08634 1.20087 1.22785 0.95658 1.04196 0.77713 1.21745 1.02838 0.92788 1.00010 0.94006 0.91083 0.92768 0.95984 0.96152 0.78227 0.93441 0.91177 0.91261 0.76550 0.87888 0.90539 0.88309 0.86668 0.86686 0.85747 0.89586 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.94 37.16 0.33 -1.46 16 2 C -0.11 -1.48 2.46 -90.62 -0.22 -1.70 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 5 N -0.73 -17.47 5.33 -59.91 -0.32 -17.79 16 6 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 7 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 10 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 14 C 0.13 1.44 5.06 -4.04 -0.02 1.42 16 15 N -0.72 -6.00 5.01 -60.30 -0.30 -6.31 16 16 C 0.51 4.52 7.12 -10.99 -0.08 4.44 16 17 O -0.53 -7.13 15.55 5.56 0.09 -7.04 16 18 C -0.11 -0.51 1.98 -93.84 -0.19 -0.70 16 19 H 0.10 0.18 7.68 -51.93 -0.40 -0.22 16 20 C -0.11 -0.59 4.41 -27.38 -0.12 -0.71 16 21 C -0.04 -0.15 6.00 -26.98 -0.16 -0.31 16 22 C 0.18 1.47 7.10 -156.72 -1.11 0.36 16 23 N -0.30 -3.54 12.37 32.63 0.40 -3.13 16 24 N -0.08 -1.09 13.45 60.32 0.81 -0.28 16 25 N -0.09 -1.02 13.36 60.35 0.81 -0.21 16 26 N -0.30 -2.27 3.36 -57.35 -0.19 -2.46 16 27 C 0.12 0.33 6.72 -3.19 -0.02 0.30 16 28 C -0.14 -0.48 4.94 -27.58 -0.14 -0.62 16 29 H 0.04 0.39 7.18 -51.93 -0.37 0.01 16 30 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 9.51 6.85 -40.82 -0.28 9.23 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 2.24 6.43 -40.82 -0.26 1.98 16 39 H 0.10 0.64 7.44 -51.93 -0.39 0.25 16 40 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 41 H 0.10 0.14 7.89 -51.93 -0.41 -0.27 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.12 -0.01 7.87 -51.93 -0.41 -0.42 16 44 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 46 H 0.11 0.22 6.58 -51.93 -0.34 -0.13 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.28 370.64 -6.41 -42.69 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.99 Total: 1.87 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.00 Total: -3.20 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 1.93 Total: -56.83 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.09 Total: -7.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.28 -6.41 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.083 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds