Wall clock time and date at job start Tue Mar 31 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 N 1.46497 * 109.47007 * 295.00479 * 4 2 1 6 6 C 1.36945 * 119.99639 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00064 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99933 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99765 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 119.99930 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47192 * 90.00559 * 10 8 6 12 12 H 1.48508 * 109.47135 * 209.99974 * 10 8 6 13 13 H 1.48499 * 109.47377 * 330.00157 * 10 8 6 14 14 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 15 15 N 1.46498 * 109.47113 * 65.00243 * 14 2 1 16 16 C 1.34781 * 120.00367 * 180.02562 * 15 14 2 17 17 O 1.21280 * 119.99444 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00106 * 179.97438 * 16 15 14 19 19 H 1.08995 * 107.91297 * 63.38823 * 18 16 15 20 20 C 1.51014 * 108.05024 * 179.97438 * 18 16 15 21 21 C 1.53687 * 110.86928 * 193.86771 * 20 18 16 22 22 C 1.51806 * 106.94703 * 280.98270 * 21 20 18 23 23 N 1.30306 * 127.91409 * 245.54787 * 22 21 20 24 24 N 1.29269 * 107.46116 * 180.02562 * 23 22 21 25 25 N 1.29152 * 109.43169 * 359.97438 * 24 23 22 26 26 N 1.28393 * 108.35658 * 0.02562 * 25 24 23 27 27 C 1.47653 * 127.74599 * 179.97438 * 26 25 24 28 28 C 1.50878 * 108.05109 * 306.80989 * 18 16 15 29 29 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 32 32 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 33 33 H 1.08995 * 109.46794 * 175.00294 * 4 2 1 34 34 H 0.96993 * 120.00553 * 359.97438 * 5 4 2 35 35 H 0.97004 * 119.99763 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47097 * 184.99640 * 14 2 1 37 37 H 1.09002 * 109.47223 * 304.99821 * 14 2 1 38 38 H 0.97004 * 120.00154 * 359.97438 * 15 14 2 39 39 H 1.08996 * 109.19501 * 314.22843 * 20 18 16 40 40 H 1.08999 * 109.19483 * 73.51719 * 20 18 16 41 41 H 1.09007 * 109.95441 * 40.34639 * 21 20 18 42 42 H 1.08994 * 109.95505 * 161.53164 * 21 20 18 43 43 H 1.08996 * 109.92092 * 233.67154 * 27 26 25 44 44 H 1.09001 * 109.91847 * 354.76864 * 27 26 25 45 45 H 1.08998 * 109.13582 * 286.16847 * 28 18 16 46 46 H 1.09001 * 109.13059 * 45.27916 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0010 -0.4208 3.6857 7 1 2.5620 -1.3380 3.7866 8 6 1.6341 0.2964 4.8162 9 7 0.9508 1.4146 4.6931 10 14 2.1103 -0.3254 6.5119 11 1 3.4330 0.2334 6.8907 12 1 1.0897 0.1044 7.5014 13 1 2.1867 -1.8083 6.4920 14 6 2.0400 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4423 16 6 1.9956 -0.4136 -3.6660 17 8 2.6256 -1.4438 -3.7792 18 6 1.5965 0.3644 -4.8933 19 1 2.0924 1.3341 -4.8515 20 6 2.1147 -0.3740 -6.1044 21 6 2.0524 0.5156 -7.3561 22 6 0.6128 0.5015 -7.8377 23 7 0.1455 0.0097 -8.9503 24 7 -1.1313 0.2117 -8.9576 25 7 -1.4763 0.8201 -7.8718 26 7 -0.4227 1.0116 -7.1634 27 6 -0.3274 1.6685 -5.8445 28 6 0.1072 0.5987 -4.8345 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 1.1488 0.8594 2.3518 35 1 0.6941 1.9156 5.4831 36 1 3.1263 -0.7994 -1.2055 37 1 1.6054 -1.7199 -1.2951 38 1 1.1483 0.8591 -2.3518 39 1 3.1482 -0.6718 -5.9274 40 1 1.5085 -1.2650 -6.2675 41 1 2.3506 1.5334 -7.1044 42 1 2.7088 0.1164 -8.1292 43 1 0.4134 2.4672 -5.8801 44 1 -1.2982 2.0751 -5.5611 45 1 -0.4104 -0.3340 -5.0586 46 1 -0.1639 0.9240 -3.8301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:46 Heat of formation + Delta-G solvation = 79.251577 kcal Electronic energy + Delta-G solvation = -26931.087474 eV Core-core repulsion = 23086.307900 eV Total energy + Delta-G solvation = -3844.779574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.70116 -40.62669 -37.91216 -36.92165 -35.31298 -34.59087 -33.34870 -32.40848 -31.77332 -30.13875 -28.15540 -26.53313 -25.57832 -25.25402 -24.01073 -22.87454 -22.03789 -21.50672 -20.60110 -19.84540 -18.34700 -17.81554 -17.30071 -16.94006 -16.38032 -16.10883 -15.53318 -15.07421 -14.83126 -14.63254 -14.44272 -14.12106 -14.00358 -13.68641 -13.60898 -13.17769 -12.93632 -12.76008 -12.58679 -12.48691 -12.36199 -12.19860 -12.14522 -11.79153 -11.54463 -11.38454 -11.31045 -11.15405 -10.99546 -10.80622 -10.66889 -10.54455 -10.39217 -10.16223 -9.97631 -9.73699 -9.24022 -8.94447 -6.99776 -5.83933 -3.12559 0.90792 1.53634 1.89199 2.29540 2.82909 3.39185 3.41522 3.44828 3.46153 3.64614 3.77884 3.80802 4.10511 4.32706 4.37498 4.43660 4.52826 4.60158 4.69313 4.76506 4.89110 4.94581 5.08084 5.08707 5.14265 5.24200 5.27275 5.36675 5.42900 5.50867 5.63873 5.67228 5.79113 5.82937 5.85060 5.98370 6.10411 6.25384 6.31585 6.54090 6.66534 6.75915 7.22824 7.64326 7.93026 8.25906 8.35234 9.46682 10.03008 10.37600 11.38968 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.033424 B = 0.001984 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.517643 B =14107.753897 C =14640.833191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.535 6.535 18 C -0.113 4.113 19 H 0.104 0.896 20 C -0.105 4.105 21 C -0.036 4.036 22 C 0.183 3.817 23 N -0.301 5.301 24 N -0.084 5.084 25 N -0.093 5.093 26 N -0.305 5.305 27 C 0.117 3.883 28 C -0.135 4.135 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 3.624 -23.602 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.296 3.704 17 O -0.411 6.411 18 C -0.134 4.134 19 H 0.122 0.878 20 C -0.144 4.144 21 C -0.077 4.077 22 C -0.096 4.096 23 N -0.150 5.150 24 N -0.077 5.077 25 N -0.078 5.078 26 N -0.108 5.108 27 C -0.004 4.004 28 C -0.173 4.173 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.142 0.858 45 H 0.104 0.896 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.284 2.462 -24.445 24.571 hybrid contribution 0.299 0.711 1.848 2.003 sum 0.015 3.173 -22.597 22.819 Atomic orbital electron populations 1.21795 0.94660 1.01989 1.01426 1.21556 0.96677 1.00488 0.94217 0.90506 1.20576 0.96640 0.94234 0.85366 1.42327 1.66977 1.27647 1.00580 1.19233 1.28762 1.05479 0.83627 0.91139 1.24742 1.00952 0.97403 0.97916 1.69655 1.43499 1.16595 1.28557 0.86173 0.77604 0.78052 0.84265 1.21698 1.21754 1.20730 1.21458 1.00285 0.95288 0.82802 1.46123 1.57542 1.27825 1.06048 1.20433 0.79660 0.85769 0.84492 1.90739 1.39706 1.24135 1.86519 1.20776 0.96419 1.01512 0.94729 0.87774 1.21240 1.04742 0.98001 0.90436 1.20766 0.85442 1.02545 0.98923 1.26083 0.95594 0.97662 0.90226 1.74980 1.02937 1.20002 1.17067 1.78893 1.05026 1.12055 1.11727 1.78878 1.11723 1.16186 1.01055 1.48625 1.05072 1.39019 1.18052 1.22782 1.06461 0.95438 0.75690 1.21739 0.95157 1.00099 1.00341 0.94081 0.92782 0.91058 0.96001 0.96117 0.78226 0.93501 0.91187 0.91249 0.76551 0.87874 0.90553 0.88295 0.86663 0.86673 0.85757 0.89610 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.94 37.16 0.33 -1.47 16 2 C -0.11 -1.48 2.46 -90.62 -0.22 -1.70 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 5 N -0.73 -17.45 5.33 -59.91 -0.32 -17.77 16 6 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 10 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.13 1.44 5.06 -4.04 -0.02 1.42 16 15 N -0.72 -6.00 5.01 -60.30 -0.30 -6.31 16 16 C 0.51 4.52 7.12 -10.98 -0.08 4.44 16 17 O -0.53 -7.12 15.55 5.56 0.09 -7.04 16 18 C -0.11 -0.51 1.98 -93.84 -0.19 -0.70 16 19 H 0.10 0.19 7.68 -51.93 -0.40 -0.21 16 20 C -0.11 -0.58 4.41 -27.37 -0.12 -0.70 16 21 C -0.04 -0.15 6.00 -26.98 -0.16 -0.31 16 22 C 0.18 1.46 7.10 -156.74 -1.11 0.35 16 23 N -0.30 -3.52 12.37 32.63 0.40 -3.11 16 24 N -0.08 -1.08 13.45 60.31 0.81 -0.27 16 25 N -0.09 -1.01 13.36 60.35 0.81 -0.20 16 26 N -0.30 -2.25 3.36 -57.36 -0.19 -2.44 16 27 C 0.12 0.32 6.72 -3.20 -0.02 0.30 16 28 C -0.13 -0.47 4.94 -27.58 -0.14 -0.60 16 29 H 0.04 0.38 7.18 -51.93 -0.37 0.01 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 9.50 6.85 -40.82 -0.28 9.22 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 2.24 6.43 -40.82 -0.26 1.98 16 39 H 0.10 0.64 7.44 -51.93 -0.39 0.25 16 40 H 0.08 0.60 7.92 -51.93 -0.41 0.18 16 41 H 0.10 0.14 7.89 -51.93 -0.41 -0.27 16 42 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.12 -0.01 7.87 -51.93 -0.41 -0.42 16 44 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 0.50 8.08 -51.93 -0.42 0.08 16 46 H 0.11 0.20 6.58 -51.93 -0.34 -0.14 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.24 370.64 -6.41 -42.65 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.99 Total: 1.82 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.00 Total: -3.21 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 1.93 Total: -56.72 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.09 Total: -7.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.24 -6.41 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.905 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds