Wall clock time and date at job start Tue Mar 31 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 N 1.46497 * 109.47007 * 295.00479 * 4 2 1 6 6 C 1.36945 * 119.99639 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00064 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99933 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99765 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 119.99930 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47192 * 90.00559 * 10 8 6 12 12 H 1.48508 * 109.47135 * 209.99974 * 10 8 6 13 13 H 1.48499 * 109.47377 * 330.00157 * 10 8 6 14 14 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 15 15 N 1.46498 * 109.47113 * 65.00243 * 14 2 1 16 16 C 1.34781 * 120.00367 * 180.02562 * 15 14 2 17 17 O 1.21280 * 119.99444 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00106 * 179.97438 * 16 15 14 19 19 H 1.08995 * 107.91297 * 63.38823 * 18 16 15 20 20 C 1.51014 * 108.05024 * 179.97438 * 18 16 15 21 21 C 1.53687 * 110.86928 * 193.86771 * 20 18 16 22 22 C 1.51806 * 106.94703 * 280.98270 * 21 20 18 23 23 N 1.30306 * 127.91409 * 245.54787 * 22 21 20 24 24 N 1.29269 * 107.46116 * 180.02562 * 23 22 21 25 25 N 1.29152 * 109.43169 * 359.97438 * 24 23 22 26 26 N 1.28393 * 108.35658 * 0.02562 * 25 24 23 27 27 C 1.47653 * 127.74599 * 179.97438 * 26 25 24 28 28 C 1.50878 * 108.05109 * 306.80989 * 18 16 15 29 29 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 32 32 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 33 33 H 1.08995 * 109.46794 * 175.00294 * 4 2 1 34 34 H 0.96993 * 120.00553 * 359.97438 * 5 4 2 35 35 H 0.97004 * 119.99763 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47097 * 184.99640 * 14 2 1 37 37 H 1.09002 * 109.47223 * 304.99821 * 14 2 1 38 38 H 0.97004 * 120.00154 * 359.97438 * 15 14 2 39 39 H 1.08996 * 109.19501 * 314.22843 * 20 18 16 40 40 H 1.08999 * 109.19483 * 73.51719 * 20 18 16 41 41 H 1.09007 * 109.95441 * 40.34639 * 21 20 18 42 42 H 1.08994 * 109.95505 * 161.53164 * 21 20 18 43 43 H 1.08996 * 109.92092 * 233.67154 * 27 26 25 44 44 H 1.09001 * 109.91847 * 354.76864 * 27 26 25 45 45 H 1.08998 * 109.13582 * 286.16847 * 28 18 16 46 46 H 1.09001 * 109.13059 * 45.27916 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0010 -0.4208 3.6857 7 1 2.5620 -1.3380 3.7866 8 6 1.6341 0.2964 4.8162 9 7 0.9508 1.4146 4.6931 10 14 2.1103 -0.3254 6.5119 11 1 3.4330 0.2334 6.8907 12 1 1.0897 0.1044 7.5014 13 1 2.1867 -1.8083 6.4920 14 6 2.0400 -0.7213 -1.2492 15 7 1.6525 0.0353 -2.4423 16 6 1.9956 -0.4136 -3.6660 17 8 2.6256 -1.4438 -3.7792 18 6 1.5965 0.3644 -4.8933 19 1 2.0924 1.3341 -4.8515 20 6 2.1147 -0.3740 -6.1044 21 6 2.0524 0.5156 -7.3561 22 6 0.6128 0.5015 -7.8377 23 7 0.1455 0.0097 -8.9503 24 7 -1.1313 0.2117 -8.9576 25 7 -1.4763 0.8201 -7.8718 26 7 -0.4227 1.0116 -7.1634 27 6 -0.3274 1.6685 -5.8445 28 6 0.1072 0.5987 -4.8345 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2057 34 1 1.1488 0.8594 2.3518 35 1 0.6941 1.9156 5.4831 36 1 3.1263 -0.7994 -1.2055 37 1 1.6054 -1.7199 -1.2951 38 1 1.1483 0.8591 -2.3518 39 1 3.1482 -0.6718 -5.9274 40 1 1.5085 -1.2650 -6.2675 41 1 2.3506 1.5334 -7.1044 42 1 2.7088 0.1164 -8.1292 43 1 0.4134 2.4672 -5.8801 44 1 -1.2982 2.0751 -5.5611 45 1 -0.4104 -0.3340 -5.0586 46 1 -0.1639 0.9240 -3.8301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753628992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:45 Heat of formation + Delta-G solvation = 51.943115 kcal Electronic energy + Delta-G solvation = -26932.271658 eV Core-core repulsion = 23086.307900 eV Total energy + Delta-G solvation = -3845.963758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.35985 -41.30254 -38.63663 -37.96310 -36.05962 -35.81431 -34.34609 -33.51695 -32.31169 -31.80234 -28.74740 -27.64125 -26.82342 -25.97960 -24.73719 -24.35130 -22.77448 -22.03824 -21.51898 -20.75449 -19.24576 -18.80770 -18.24377 -17.84310 -17.28776 -16.69874 -16.52257 -16.28881 -15.73273 -15.51397 -15.37103 -15.14013 -14.89583 -14.62733 -14.54690 -14.13495 -13.98748 -13.58800 -13.54624 -13.46049 -13.08103 -12.95416 -12.83352 -12.82477 -12.78160 -12.31902 -12.17696 -12.16784 -12.00631 -11.97740 -11.88074 -11.81913 -11.68156 -11.63460 -11.06085 -10.94109 -10.74243 -10.06282 -8.98638 -7.95894 -5.23447 0.28273 1.12019 1.16376 1.48208 1.48734 1.57272 1.63433 2.13897 2.56587 2.95029 3.27153 3.37610 3.38063 3.48328 3.70338 3.76095 3.91841 3.99086 4.07805 4.10116 4.18312 4.22039 4.30108 4.37663 4.42251 4.49597 4.57095 4.70883 4.73596 4.78766 4.83901 4.85942 4.93698 4.97043 5.05345 5.07435 5.14750 5.19452 5.33993 5.36678 5.44858 5.50287 5.52782 6.27475 6.58329 7.27744 7.34574 7.54591 8.10104 8.34211 9.27302 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.033424 B = 0.001984 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.517643 B =14107.753897 C =14640.833191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.084 0.916 4 C 0.154 3.846 5 N -0.740 5.740 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.273 1.273 14 C 0.138 3.862 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.585 6.585 18 C -0.103 4.103 19 H 0.151 0.849 20 C -0.100 4.100 21 C -0.027 4.027 22 C 0.188 3.812 23 N -0.339 5.339 24 N -0.125 5.125 25 N -0.108 5.108 26 N -0.295 5.295 27 C 0.109 3.891 28 C -0.129 4.129 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.417 0.583 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.159 0.841 44 H 0.140 0.860 45 H 0.057 0.943 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 5.397 -23.824 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.102 0.898 4 C 0.027 3.973 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.198 1.198 14 C 0.013 3.987 15 N -0.365 5.365 16 C 0.297 3.703 17 O -0.464 6.464 18 C -0.123 4.123 19 H 0.168 0.832 20 C -0.140 4.140 21 C -0.067 4.067 22 C -0.091 4.091 23 N -0.188 5.188 24 N -0.118 5.118 25 N -0.094 5.094 26 N -0.099 5.099 27 C -0.009 4.009 28 C -0.168 4.168 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.255 0.745 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.176 0.824 44 H 0.158 0.842 45 H 0.076 0.924 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.415 4.242 -24.683 25.049 hybrid contribution 0.129 0.103 1.940 1.947 sum 0.544 4.345 -22.744 23.161 Atomic orbital electron populations 1.21743 0.93897 1.01724 1.02010 1.21324 0.97082 1.00208 0.92556 0.89781 1.20753 0.96515 0.94081 0.85955 1.42491 1.66806 1.27814 1.01271 1.19605 1.27799 1.05243 0.85164 0.91031 1.25506 1.01741 0.97959 1.01369 1.69789 1.45005 1.17776 1.29081 0.85188 0.76994 0.77895 0.79968 1.21400 1.22123 1.19770 1.21083 0.99497 0.94885 0.83259 1.45934 1.57460 1.28097 1.04991 1.21193 0.78402 0.85252 0.85417 1.90731 1.42005 1.26506 1.87201 1.20822 0.97508 1.02526 0.91493 0.83158 1.21144 1.03775 0.97384 0.91656 1.20979 0.83043 1.04625 0.98050 1.26669 0.96979 0.96185 0.89245 1.74871 1.02841 1.21562 1.19496 1.78849 1.05950 1.13829 1.13172 1.78758 1.13176 1.16323 1.01165 1.48990 1.03986 1.38131 1.18775 1.23333 1.08906 0.95633 0.73060 1.21720 0.93842 0.99330 1.01896 0.89831 0.93501 0.94058 0.96548 0.96325 0.78964 0.93958 0.92175 0.92449 0.74506 0.88450 0.93752 0.84004 0.86165 0.82361 0.84157 0.92399 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.94 71.98 0.64 -2.59 16 2 C -0.09 -2.33 2.46 -10.79 -0.03 -2.36 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.15 5.65 5.65 86.38 0.49 6.14 16 5 N -0.74 -35.42 5.33 -343.44 -1.83 -37.25 16 6 C -0.25 -13.37 9.99 84.03 0.84 -12.54 16 7 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 8 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 9 N -0.97 -56.89 13.06 21.65 0.28 -56.60 16 10 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.14 2.94 5.06 86.38 0.44 3.38 16 15 N -0.71 -9.59 5.01 -463.07 -2.32 -11.91 16 16 C 0.51 7.74 7.12 87.66 0.62 8.37 16 17 O -0.58 -15.15 15.55 -3.03 -0.05 -15.20 16 18 C -0.10 -0.54 1.98 -12.88 -0.03 -0.57 16 19 H 0.15 -0.47 7.68 -2.39 -0.02 -0.49 16 20 C -0.10 -0.90 4.41 30.18 0.13 -0.77 16 21 C -0.03 -0.14 6.00 30.43 0.18 0.04 16 22 C 0.19 2.69 7.10 139.13 0.99 3.68 16 23 N -0.34 -7.93 12.37 -50.68 -0.63 -8.56 16 24 N -0.12 -3.30 13.45 36.91 0.50 -2.80 16 25 N -0.11 -2.28 13.36 37.02 0.49 -1.79 16 26 N -0.30 -3.70 3.36 -335.39 -1.13 -4.83 16 27 C 0.11 0.11 6.72 86.30 0.58 0.69 16 28 C -0.13 -0.41 4.94 30.04 0.15 -0.26 16 29 H 0.08 1.24 7.18 -2.39 -0.02 1.23 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.25 7.18 -2.38 -0.02 1.23 16 32 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.38 18.79 6.85 -92.71 -0.64 18.16 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 2.71 6.43 -92.71 -0.60 2.12 16 39 H 0.10 1.05 7.44 -2.39 -0.02 1.03 16 40 H 0.04 0.69 7.92 -2.39 -0.02 0.67 16 41 H 0.14 -0.43 7.89 -2.38 -0.02 -0.44 16 42 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.16 -1.12 7.87 -2.39 -0.02 -1.14 16 44 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 46 H 0.13 -0.17 6.58 -2.39 -0.02 -0.18 16 Total: -1.00 -83.99 370.64 2.61 -81.38 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.22 Total: 10.87 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.48 Total: -0.42 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -4.63 Total: -123.74 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.05 Total: -15.20 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -83.99 2.61 -81.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.323 kcal (2) G-P(sol) polarization free energy of solvation -83.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds