Wall clock time and date at job start Tue Mar 31 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47494 * 2 1 4 4 C 1.53005 * 109.46896 * 120.00338 * 2 1 3 5 5 N 1.46505 * 109.46904 * 294.99568 * 4 2 1 6 6 C 1.36931 * 119.99788 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99680 * 179.72358 * 6 5 4 9 9 N 1.31614 * 119.99888 * 0.27479 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 180.27671 * 8 6 5 11 11 H 1.48508 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 119.99997 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00044 * 10 8 6 14 14 C 1.53004 * 109.46954 * 239.99639 * 2 1 3 15 15 N 1.46503 * 109.46834 * 64.99929 * 14 2 1 16 16 C 1.34772 * 120.00149 * 179.97438 * 15 14 2 17 17 O 1.21290 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00297 * 180.02562 * 16 15 14 19 19 H 1.08997 * 107.91175 * 63.39375 * 18 16 15 20 20 C 1.51010 * 108.05347 * 306.81462 * 18 16 15 21 21 C 1.53701 * 110.86319 * 166.13155 * 20 18 16 22 22 C 1.51813 * 106.94097 * 79.01579 * 21 20 18 23 23 N 1.30309 * 127.90897 * 114.40648 * 22 21 20 24 24 N 1.29267 * 107.46486 * 179.97438 * 23 22 21 25 25 N 1.29151 * 109.43042 * 0.02562 * 24 23 22 26 26 N 1.28391 * 108.35696 * 359.97438 * 25 24 23 27 27 C 1.47656 * 127.75526 * 179.97438 * 26 25 24 28 28 C 1.50875 * 108.05546 * 180.02562 * 18 16 15 29 29 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46590 * 299.99871 * 1 2 3 31 31 H 1.08994 * 109.47208 * 60.00361 * 1 2 3 32 32 H 1.09003 * 109.46946 * 175.00327 * 4 2 1 33 33 H 1.08993 * 109.47679 * 54.99869 * 4 2 1 34 34 H 0.97000 * 119.99792 * 0.02562 * 5 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.46978 * 184.99915 * 14 2 1 37 37 H 1.08994 * 109.47113 * 305.00200 * 14 2 1 38 38 H 0.97005 * 119.99578 * 0.02562 * 15 14 2 39 39 H 1.08997 * 109.19754 * 286.49211 * 20 18 16 40 40 H 1.09005 * 109.20007 * 45.78169 * 20 18 16 41 41 H 1.09004 * 109.96834 * 319.65807 * 21 20 18 42 42 H 1.08999 * 110.03054 * 198.40904 * 21 20 18 43 43 H 1.09000 * 109.91722 * 126.34126 * 27 26 25 44 44 H 1.09002 * 109.98344 * 5.20812 * 27 26 25 45 45 H 1.09001 * 109.12862 * 314.73443 * 28 18 16 46 46 H 1.09000 * 109.12787 * 73.83967 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 1.6525 0.0353 2.4424 6 6 2.0019 -0.4204 3.6855 7 1 2.5636 -1.3373 3.7864 8 6 1.6397 0.2996 4.8158 9 7 0.9557 1.4173 4.6928 10 14 2.1231 -0.3179 6.5112 11 1 2.8817 -1.5876 6.3778 12 1 2.9715 0.6978 7.1846 13 1 0.8998 -0.5553 7.3189 14 6 2.0400 -0.7214 -1.2492 15 7 1.6524 0.0352 -2.4424 16 6 1.9963 -0.4132 -3.6659 17 8 2.6263 -1.4434 -3.7792 18 6 1.5981 0.3653 -4.8932 19 1 2.0941 1.3350 -4.8507 20 6 0.1074 0.6000 -4.8353 21 6 -0.3188 1.6669 -5.8564 22 6 -0.3765 0.9844 -7.2112 23 7 -1.4238 0.7734 -7.9574 24 7 -1.0232 0.1640 -9.0247 25 7 0.2547 -0.0130 -8.9644 26 7 0.6798 0.4824 -7.8589 27 6 2.0679 0.5128 -7.3563 28 6 2.1155 -0.3724 -6.1033 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 1.1483 0.8590 2.3518 35 1 0.7022 1.9202 5.4826 36 1 3.1263 -0.7996 -1.2056 37 1 1.6054 -1.7198 -1.2951 38 1 1.1488 0.8594 -2.3517 39 1 -0.4111 -0.3333 -5.0543 40 1 -0.1643 0.9337 -3.8338 41 1 0.4125 2.4749 -5.8777 42 1 -1.3011 2.0612 -5.5963 43 1 2.3478 1.5346 -7.1001 44 1 2.7469 0.1208 -8.1135 45 1 3.1458 -0.6785 -5.9215 46 1 1.5043 -1.2596 -6.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:49 Heat of formation + Delta-G solvation = 78.881101 kcal Electronic energy + Delta-G solvation = -26921.647552 eV Core-core repulsion = 23076.851913 eV Total energy + Delta-G solvation = -3844.795639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.69824 -40.62386 -37.90244 -36.87003 -35.46019 -34.52027 -33.12885 -32.58862 -31.74907 -30.12624 -28.15299 -26.52542 -25.60681 -25.17314 -24.02522 -22.86837 -21.98772 -21.56941 -20.58846 -19.83603 -18.34265 -17.80862 -17.26861 -16.90801 -16.40245 -16.02593 -15.63956 -15.12519 -14.78367 -14.57748 -14.48909 -14.10880 -13.95898 -13.64047 -13.47089 -13.18695 -13.02886 -12.72008 -12.59255 -12.45152 -12.42856 -12.25050 -12.14123 -11.79160 -11.54238 -11.42430 -11.22773 -11.13826 -10.99297 -10.79510 -10.66133 -10.53550 -10.42859 -10.12307 -9.95832 -9.73184 -9.22849 -8.94169 -6.98712 -5.83085 -3.11595 0.91294 1.56053 1.88762 2.30595 2.82821 3.37300 3.39432 3.45643 3.47510 3.67297 3.81612 3.89084 4.08173 4.34500 4.36851 4.41613 4.53692 4.61849 4.69512 4.74980 4.95503 4.96807 5.09593 5.13339 5.15056 5.21157 5.27756 5.34992 5.43693 5.49329 5.51842 5.69400 5.78940 5.84974 5.85991 6.00241 6.12651 6.27099 6.33210 6.56292 6.67984 6.77396 7.24129 7.65620 7.93184 8.26118 8.36016 9.47594 10.04071 10.38715 11.39889 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.034221 B = 0.001974 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.019539 B =14178.906822 C =14692.788891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.125 3.875 15 N -0.721 5.721 16 C 0.512 3.488 17 O -0.539 6.539 18 C -0.113 4.113 19 H 0.104 0.896 20 C -0.117 4.117 21 C -0.035 4.035 22 C 0.180 3.820 23 N -0.300 5.300 24 N -0.084 5.084 25 N -0.093 5.093 26 N -0.303 5.303 27 C 0.115 3.885 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 3.076 -24.355 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.002 3.998 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.416 6.416 18 C -0.135 4.135 19 H 0.122 0.878 20 C -0.156 4.156 21 C -0.075 4.075 22 C -0.098 4.098 23 N -0.149 5.149 24 N -0.078 5.078 25 N -0.079 5.079 26 N -0.106 5.106 27 C -0.005 4.005 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.329 1.713 -25.464 25.556 hybrid contribution 0.440 0.643 1.753 1.918 sum 1.769 2.356 -23.711 23.894 Atomic orbital electron populations 1.21796 0.94599 1.02005 1.01504 1.21557 0.96738 1.00476 0.94170 0.90498 1.20576 0.96612 0.94237 0.85387 1.42336 1.66927 1.27685 1.00585 1.19278 1.28736 1.05388 0.83640 0.91092 1.24742 1.01010 0.97370 0.97910 1.69660 1.43604 1.16548 1.28444 0.86109 0.77643 0.77836 0.84563 1.20530 1.21856 1.21845 1.21461 1.00227 0.95312 0.82833 1.46106 1.57392 1.27837 1.05981 1.20418 0.79536 0.85723 0.84583 1.90736 1.39991 1.24277 1.86589 1.20761 0.97602 1.01111 0.93998 0.87774 1.21451 0.93679 1.00085 1.00421 1.20734 1.05966 0.96613 0.84199 1.26019 0.83515 1.00649 0.99665 1.74979 1.24021 1.15327 1.00567 1.78893 1.01002 1.12986 1.14891 1.78870 1.08329 1.16833 1.03831 1.48681 1.11589 1.37283 1.13031 1.22857 0.76227 1.03677 0.97754 1.21541 1.05609 0.98245 0.90688 0.92787 0.91064 0.93964 0.96148 0.96002 0.78211 0.93546 0.91230 0.91245 0.76384 0.90269 0.88673 0.88076 0.86486 0.86880 0.85929 0.86776 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.94 37.16 0.33 -1.51 16 2 C -0.11 -1.49 2.46 -90.61 -0.22 -1.71 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.16 2.97 5.65 -4.04 -0.02 2.95 16 5 N -0.73 -17.51 5.33 -59.90 -0.32 -17.83 16 6 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 10 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.13 1.45 5.07 -4.04 -0.02 1.43 16 15 N -0.72 -6.12 5.02 -60.29 -0.30 -6.42 16 16 C 0.51 4.52 7.12 -10.99 -0.08 4.44 16 17 O -0.54 -7.08 15.54 5.55 0.09 -6.99 16 18 C -0.11 -0.51 1.98 -93.84 -0.19 -0.70 16 19 H 0.10 0.18 7.68 -51.93 -0.40 -0.22 16 20 C -0.12 -0.48 4.89 -27.37 -0.13 -0.61 16 21 C -0.03 -0.12 6.00 -26.97 -0.16 -0.28 16 22 C 0.18 1.41 7.10 -156.73 -1.11 0.30 16 23 N -0.30 -3.48 12.37 32.63 0.40 -3.08 16 24 N -0.08 -1.09 13.45 60.32 0.81 -0.28 16 25 N -0.09 -1.02 13.36 60.35 0.81 -0.21 16 26 N -0.30 -2.28 3.36 -57.31 -0.19 -2.47 16 27 C 0.12 0.38 6.72 -3.15 -0.02 0.36 16 28 C -0.12 -0.60 4.47 -27.54 -0.12 -0.72 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.13 7.18 -51.93 -0.37 0.75 16 31 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.54 6.85 -40.82 -0.28 9.26 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.40 2.40 6.44 -40.82 -0.26 2.14 16 39 H 0.08 0.50 7.92 -51.93 -0.41 0.08 16 40 H 0.09 0.27 6.60 -51.93 -0.34 -0.07 16 41 H 0.10 0.09 7.89 -51.93 -0.41 -0.32 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.05 7.87 -51.93 -0.41 -0.36 16 44 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.11 0.59 7.41 -51.93 -0.38 0.21 16 46 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.19 370.64 -6.41 -42.60 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.99 Total: 2.06 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.00 Total: -3.22 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 1.93 Total: -56.98 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.19 -6.41 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.482 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds