Wall clock time and date at job start Tue Mar 31 2020 04:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86796 * 120.00380 * 2 1 4 4 H 1.48500 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47311 * 300.00433 * 3 2 1 6 6 H 1.48500 * 109.47081 * 60.00024 * 3 2 1 7 7 C 1.38654 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00382 * 185.06105 * 9 7 2 11 11 C 1.38901 * 120.06503 * 354.46582 * 10 9 7 12 12 C 1.38082 * 119.92651 * 180.02562 * 11 10 9 13 13 C 1.38319 * 120.07052 * 359.97438 * 12 11 10 14 14 C 1.38272 * 120.13988 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96851 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47280 * 89.99629 * 15 14 13 17 17 O 1.21280 * 120.00119 * 0.02562 * 16 15 14 18 18 N 1.34784 * 120.00183 * 180.02562 * 16 15 14 19 19 C 1.46379 * 119.64471 * 359.73033 * 18 16 15 20 20 C 1.53761 * 109.20514 * 114.90808 * 19 18 16 21 21 S 1.81745 * 108.74902 * 57.83358 * 20 19 18 22 22 O 1.42105 * 109.46718 * 189.30641 * 21 20 19 23 23 C 1.81746 * 102.30774 * 305.34174 * 21 20 19 24 24 C 1.46380 * 119.64765 * 180.02562 * 18 16 15 25 25 C 1.38124 * 120.07131 * 0.27209 * 14 13 12 26 26 H 0.97001 * 119.99593 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.03991 * 0.02562 * 11 10 9 28 28 H 1.08003 * 119.96409 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.93269 * 179.97438 * 13 12 11 30 30 H 1.09005 * 109.47157 * 329.99509 * 15 14 13 31 31 H 1.09002 * 109.47128 * 210.00165 * 15 14 13 32 32 H 1.09000 * 109.46660 * 234.91961 * 19 18 16 33 33 H 1.09005 * 109.46643 * 354.90500 * 19 18 16 34 34 H 1.08991 * 109.69925 * 297.99851 * 20 19 18 35 35 H 1.08997 * 109.51040 * 177.55503 * 20 19 18 36 36 H 1.09000 * 109.58292 * 294.75226 * 23 21 20 37 37 H 1.08992 * 109.58360 * 174.33565 * 23 21 20 38 38 H 1.08999 * 109.46482 * 5.09807 * 24 18 16 39 39 H 1.08994 * 109.46585 * 125.08106 * 24 18 16 40 40 H 1.07992 * 120.03940 * 179.70629 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1056 11 6 3.4572 -3.4396 0.0922 12 6 4.2022 -4.5971 0.1999 13 6 3.5684 -5.8205 0.3215 14 6 2.1874 -5.8886 0.3351 15 6 1.5008 -7.2236 0.4672 16 6 1.2792 -7.5325 1.9254 17 8 1.6426 -6.7459 2.7739 18 7 0.6772 -8.6831 2.2867 19 6 0.2364 -9.6243 1.2559 20 6 1.0466 -10.9253 1.3791 21 16 0.8162 -11.6010 3.0505 22 8 1.7200 -12.6784 3.2545 23 6 1.2960 -10.2000 4.1042 24 6 0.4654 -8.9750 3.7053 25 6 1.4364 -4.7350 0.2216 26 1 -0.4849 0.8401 -0.0004 27 1 3.9527 -2.4847 -0.0022 28 1 5.2811 -4.5473 0.1891 29 1 4.1533 -6.7246 0.4051 30 1 2.1248 -7.9988 0.0223 31 1 0.5404 -7.1908 -0.0473 32 1 -0.8237 -9.8394 1.3898 33 1 0.3964 -9.1855 0.2710 34 1 2.1033 -10.7173 1.2116 35 1 0.6927 -11.6458 0.6418 36 1 2.3554 -9.9844 3.9653 37 1 1.1051 -10.4463 5.1486 38 1 0.7733 -8.1168 4.3027 39 1 -0.5908 -9.1792 3.8804 40 1 0.3578 -4.7892 0.2276 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760503505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:04 Heat of formation + Delta-G solvation = -63.301184 kcal Electronic energy + Delta-G solvation = -24385.625125 eV Core-core repulsion = 20679.279611 eV Total energy + Delta-G solvation = -3706.345514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30039 -38.89027 -36.89560 -36.29811 -35.92474 -32.86501 -32.25046 -31.63172 -30.30971 -29.16307 -27.14497 -25.25855 -24.18783 -23.47799 -21.65885 -20.99888 -19.56480 -17.86189 -17.63347 -17.29736 -16.97868 -16.18564 -15.72469 -15.54814 -15.15054 -15.04220 -14.91092 -14.54907 -14.37662 -13.99536 -13.80572 -13.50624 -13.37642 -13.15044 -12.65783 -12.50164 -12.37715 -12.32141 -12.06261 -11.83717 -11.79400 -11.54229 -11.26655 -10.84816 -10.75578 -10.60937 -10.41371 -10.31530 -9.77770 -9.31528 -9.05540 -8.81797 -8.69128 -8.05861 -7.20244 -6.42113 -4.00913 1.13844 2.07632 2.09653 2.40023 2.59633 2.78096 3.14059 3.15873 3.21148 3.36158 3.98758 4.26804 4.31544 4.53620 4.63028 4.70317 4.74806 4.87648 4.93037 5.07966 5.13089 5.16850 5.26936 5.40941 5.44045 5.58126 5.58551 5.65439 5.75004 5.93443 6.18205 6.23630 6.34973 6.66084 6.92565 7.08647 7.09753 7.26965 7.38648 7.45862 7.83891 8.03216 8.13459 9.03965 9.74435 10.76294 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.002419 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.473809 B =11573.119090 C =11846.910007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.074 4.074 13 C -0.198 4.198 14 C -0.035 4.035 15 C -0.094 4.094 16 C 0.516 3.484 17 O -0.510 6.510 18 N -0.633 5.633 19 C 0.129 3.871 20 C -0.462 4.462 21 S 1.241 4.759 22 O -0.855 6.855 23 C -0.456 4.456 24 C 0.133 3.867 25 C -0.174 4.174 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -21.476 2.885 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.217 4.217 14 C -0.036 4.036 15 C -0.134 4.134 16 C 0.305 3.695 17 O -0.383 6.383 18 N -0.369 5.369 19 C 0.005 3.995 20 C -0.601 4.601 21 S 1.439 4.561 22 O -0.851 6.851 23 C -0.595 4.595 24 C 0.009 3.991 25 C -0.193 4.193 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.053 -21.733 3.606 22.400 hybrid contribution 2.831 1.332 -0.351 3.149 sum -1.222 -20.401 3.255 20.695 Atomic orbital electron populations 1.70049 1.05927 1.27458 1.46501 1.25274 0.95845 0.98777 0.96651 0.85653 0.79143 0.80446 0.78214 1.19142 1.20175 1.20155 1.21363 0.91803 0.80833 1.52646 0.89090 1.83971 1.34250 1.11373 1.78717 1.19269 0.90229 0.87976 0.92354 1.21186 0.93874 0.98935 1.10936 1.20676 0.98378 0.92299 0.97907 1.20329 0.93323 0.96959 1.11064 1.18657 0.93208 0.91944 0.99759 1.20653 1.02612 0.97156 0.92957 1.20894 0.76425 0.80338 0.91879 1.90763 1.48129 1.46687 1.52672 1.48164 1.61512 1.20608 1.06632 1.21382 0.98220 0.86958 0.92973 1.28107 1.06621 1.05835 1.19494 1.70410 1.17167 0.81626 0.86920 1.93128 1.69001 1.40903 1.82048 1.27990 1.07387 1.12173 1.11932 1.21060 0.99058 0.97039 0.81945 1.19926 0.99048 0.89885 1.10451 0.92140 0.85584 0.87514 0.88167 0.88495 0.87909 0.88947 0.88199 0.89004 0.85647 0.89160 0.85839 0.87750 0.89412 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.11 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -5.22 9.76 0.06 0.00 -5.21 16 10 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 11 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 12 C -0.07 -1.45 10.04 -39.61 -0.40 -1.84 16 13 C -0.20 -3.61 9.70 -39.54 -0.38 -3.99 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.09 -1.20 4.13 -29.04 -0.12 -1.32 16 16 C 0.52 7.09 7.66 -10.98 -0.08 7.00 16 17 O -0.51 -9.59 15.33 5.56 0.09 -9.51 16 18 N -0.63 -5.72 2.78 -173.24 -0.48 -6.20 16 19 C 0.13 0.65 6.17 -3.71 -0.02 0.62 16 20 C -0.46 -2.51 6.67 37.55 0.25 -2.26 16 21 S 1.24 7.47 13.71 -107.50 -1.47 5.99 16 22 O -0.86 -11.31 18.14 -35.23 -0.64 -11.95 16 23 C -0.46 -3.30 6.65 37.30 0.25 -3.05 16 24 C 0.13 1.02 6.22 -3.96 -0.02 0.99 16 25 C -0.17 -3.75 9.64 -39.39 -0.38 -4.13 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 28 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.10 0.97 7.82 -51.93 -0.41 0.57 16 31 H 0.10 1.05 7.60 -51.93 -0.39 0.65 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.10 0.45 5.73 -51.93 -0.30 0.15 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.10 6.88 -51.93 -0.36 0.74 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -40.84 346.52 -8.31 -49.15 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.96 Total: 2.40 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.80 Total: -20.88 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.28 Total: -31.03 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.55 Total: -26.67 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.47 Total: 5.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -40.84 -8.31 -49.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760503505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.152 kcal (2) G-P(sol) polarization free energy of solvation -40.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds