Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35687 * 117.00165 * 2 1 4 4 C 1.38602 * 120.16258 * 0.02724 * 3 2 1 5 5 C 1.38131 * 120.11693 * 180.02562 * 4 3 2 6 6 C 1.38572 * 120.43050 * 359.96982 * 5 4 3 7 7 C 1.37752 * 120.32526 * 359.74460 * 6 5 4 8 8 C 1.39940 * 119.87750 * 0.53489 * 7 6 5 9 9 C 1.46924 * 120.21181 * 179.74719 * 8 7 6 10 10 C 1.35052 * 120.00128 * 359.71847 * 9 8 7 11 11 C 1.46171 * 120.00126 * 180.02562 * 10 9 8 12 12 O 1.21733 * 119.99612 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00063 * 180.02562 * 11 10 9 14 14 C 1.39062 * 119.99874 * 175.71709 * 13 11 10 15 15 C 1.39529 * 119.83862 * 215.04343 * 14 13 11 16 16 C 1.36347 * 120.16648 * 179.71734 * 15 14 13 17 17 C 1.40888 * 119.83206 * 0.57469 * 16 15 14 18 18 C 1.41123 * 120.16094 * 179.67421 * 17 16 15 19 19 H 1.07996 * 120.00031 * 214.80490 * 18 17 16 20 20 C 1.39915 * 119.99813 * 34.81358 * 18 17 16 21 21 N 1.30873 * 119.99764 * 355.54995 * 20 18 17 22 22 Si 1.86794 * 119.99810 * 175.55656 * 20 18 17 23 23 H 1.48506 * 109.47238 * 89.99434 * 22 20 18 24 24 H 1.48500 * 109.47014 * 209.99601 * 22 20 18 25 25 H 1.48501 * 109.47320 * 329.99456 * 22 20 18 26 26 C 1.40889 * 119.67791 * 359.70045 * 17 16 15 27 27 C 1.36346 * 119.83162 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.47215 * 299.99936 * 1 2 3 29 29 H 1.08999 * 109.47205 * 59.99449 * 1 2 3 30 30 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.94189 * 359.97240 * 4 3 2 32 32 H 1.07997 * 119.78374 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.83523 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.05878 * 180.27833 * 7 6 5 35 35 H 1.07996 * 119.99868 * 179.72230 * 9 8 7 36 36 H 1.08005 * 120.00293 * 359.72816 * 10 9 8 37 37 H 0.97003 * 120.00240 * 355.71767 * 13 11 10 38 38 H 1.08007 * 119.91503 * 359.97438 * 15 14 13 39 39 H 1.08008 * 120.08471 * 180.27349 * 16 15 14 40 40 H 0.96997 * 119.99603 * 180.02562 * 21 20 18 41 41 H 1.07994 * 120.08359 * 179.97438 * 26 17 16 42 42 H 1.08005 * 119.91790 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2934 2.3735 0.0006 5 6 1.9216 3.6038 0.0000 6 6 3.3049 3.6856 -0.0004 7 6 4.0694 2.5396 0.0049 8 6 3.4469 1.2863 -0.0005 9 6 4.2551 0.0594 -0.0004 10 6 5.6033 0.1389 -0.0009 11 6 6.4074 -1.0818 -0.0014 12 8 5.8618 -2.1700 -0.0019 13 7 7.7528 -1.0024 -0.0014 14 6 8.5176 -2.1604 0.0880 15 6 9.7239 -2.1433 0.7890 16 6 10.4763 -3.2762 0.8858 17 6 10.0388 -4.4632 0.2656 18 6 10.8154 -5.6381 0.3555 19 1 10.8505 -6.3271 -0.4753 20 6 11.5396 -5.9104 1.5213 21 7 11.5671 -5.0352 2.4939 22 14 12.4673 -7.5229 1.6892 23 1 13.8477 -7.3566 1.1674 24 1 12.5230 -7.9152 3.1204 25 1 11.7688 -8.5790 0.9134 26 6 8.8224 -4.4714 -0.4453 27 6 8.0774 -3.3324 -0.5280 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2148 2.3190 0.0006 32 1 1.3307 4.5078 0.0001 33 1 3.7860 4.6525 -0.0004 34 1 5.1471 2.6084 0.0091 35 1 3.7711 -0.9060 0.0000 36 1 6.0874 1.1044 -0.0058 37 1 8.1877 -0.1376 -0.0638 38 1 10.0606 -1.2312 1.2595 39 1 11.4077 -3.2626 1.4324 40 1 12.0695 -5.2238 3.3019 41 1 8.4810 -5.3775 -0.9236 42 1 7.1446 -3.3373 -1.0723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004672385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -25.359431 kcal Electronic energy + Delta-G solvation = -24754.824567 eV Core-core repulsion = 21050.513475 eV Total energy + Delta-G solvation = -3704.311092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33823 -41.01917 -39.11311 -38.42422 -36.21135 -35.09121 -34.68462 -31.52805 -31.27164 -31.14921 -30.32003 -28.14933 -27.09095 -25.20119 -23.51805 -23.08967 -22.71389 -21.75337 -20.36028 -19.31555 -19.16117 -18.35386 -17.99436 -17.05551 -17.01534 -16.72815 -16.47141 -16.10739 -15.66894 -15.50613 -15.40804 -14.85782 -14.64802 -14.51875 -14.27339 -14.01366 -13.80794 -13.59229 -13.30282 -13.23722 -12.92264 -12.86946 -12.78990 -12.48377 -12.19386 -12.07177 -11.85714 -11.79704 -11.40858 -11.36169 -11.21300 -10.84366 -10.60732 -9.64877 -9.47840 -8.97942 -8.68839 -8.50559 -6.33116 -0.46708 0.44911 0.75580 1.07793 1.15578 1.39336 1.48801 1.55017 2.23919 2.30613 2.32315 2.41246 2.80844 2.89971 3.61679 3.68015 3.78801 3.98152 4.10406 4.20150 4.32200 4.36262 4.39073 4.40954 4.45771 4.53641 4.64845 4.71233 4.91655 4.95876 5.01030 5.11862 5.14459 5.25240 5.33585 5.42499 5.45604 5.52587 5.58947 5.69449 5.81637 5.91450 6.02782 6.14037 6.38379 6.39329 6.66902 6.75281 6.95990 6.99458 7.40607 8.42088 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002029 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.201760 B =13796.935916 C =14407.289262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.132 3.868 4 C -0.218 4.218 5 C -0.064 4.064 6 C -0.161 4.161 7 C -0.065 4.065 8 C -0.134 4.134 9 C -0.007 4.007 10 C -0.213 4.213 11 C 0.527 3.473 12 O -0.587 6.587 13 N -0.637 5.637 14 C 0.019 3.981 15 C -0.118 4.118 16 C -0.159 4.159 17 C 0.067 3.933 18 C -0.497 4.497 19 H 0.072 0.928 20 C 0.026 3.974 21 N -0.841 5.841 22 Si 0.990 3.010 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.263 1.263 26 C -0.222 4.222 27 C -0.099 4.099 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.169 0.831 37 H 0.420 0.580 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.095 0.905 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 20.674 -2.887 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.086 3.914 4 C -0.236 4.236 5 C -0.082 4.082 6 C -0.179 4.179 7 C -0.083 4.083 8 C -0.135 4.135 9 C -0.027 4.027 10 C -0.234 4.234 11 C 0.319 3.681 12 O -0.470 6.470 13 N -0.281 5.281 14 C -0.075 4.075 15 C -0.138 4.138 16 C -0.179 4.179 17 C 0.064 3.936 18 C -0.528 4.528 19 H 0.091 0.909 20 C -0.186 4.186 21 N -0.469 5.469 22 Si 0.811 3.189 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.242 4.242 27 C -0.119 4.119 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.170 0.830 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.126 0.874 36 H 0.186 0.814 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.120 19.790 -2.646 26.963 hybrid contribution 0.292 -0.789 0.164 0.857 sum -17.829 19.001 -2.482 26.174 Atomic orbital electron populations 1.23383 0.76076 1.05496 1.02704 1.86049 1.23848 1.27442 1.87943 1.19513 0.91673 0.85265 0.94939 1.21497 1.01292 0.91725 1.09096 1.21538 0.95123 0.97661 0.93874 1.21400 0.94104 0.99176 1.03257 1.21598 1.01472 0.90179 0.95068 1.18484 0.90154 0.93772 1.11042 1.22111 0.93494 0.97250 0.89876 1.22786 0.93993 0.97201 1.09385 1.19015 0.82454 0.90307 0.76278 1.90781 1.72624 1.31635 1.51935 1.42748 1.05345 1.08618 1.71365 1.17343 0.95506 0.88036 1.06594 1.20585 0.95013 0.98851 0.99305 1.21194 1.01190 0.91530 1.03996 1.18054 0.90961 0.93557 0.90995 1.19710 1.25726 1.05834 1.01480 0.90932 1.26773 0.95289 1.02067 0.94452 1.69826 1.34873 1.36007 1.06156 0.85080 0.78600 0.76889 0.78333 1.18271 1.19359 1.18756 1.20926 0.96596 0.97544 1.09137 1.20531 0.98735 0.93173 0.99428 0.91092 0.91015 0.87122 0.83006 0.82461 0.82672 0.82939 0.87387 0.81406 0.74241 0.85475 0.86101 0.90431 0.88671 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.60 9.68 -90.05 -0.87 -8.47 16 3 C 0.13 2.76 6.70 22.88 0.15 2.91 16 4 C -0.22 -3.08 9.03 22.33 0.20 -2.88 16 5 C -0.06 -0.70 10.03 22.32 0.22 -0.47 16 6 C -0.16 -1.88 10.02 22.23 0.22 -1.66 16 7 C -0.07 -1.04 9.41 22.57 0.21 -0.83 16 8 C -0.13 -2.98 5.88 -20.06 -0.12 -3.10 16 9 C -0.01 -0.20 9.21 23.81 0.22 0.02 16 10 C -0.21 -5.70 9.41 23.60 0.22 -5.47 16 11 C 0.53 19.69 7.56 86.30 0.65 20.35 16 12 O -0.59 -27.91 13.64 -4.45 -0.06 -27.97 16 13 N -0.64 -22.79 5.29 -307.14 -1.63 -24.41 16 14 C 0.02 0.88 6.30 38.62 0.24 1.12 16 15 C -0.12 -5.46 9.90 22.14 0.22 -5.24 16 16 C -0.16 -8.56 8.61 22.48 0.19 -8.36 16 17 C 0.07 3.81 5.55 -21.27 -0.12 3.69 16 18 C -0.50 -28.08 9.02 23.38 0.21 -27.87 16 19 H 0.07 3.97 7.85 -2.91 -0.02 3.94 16 20 C 0.03 1.37 5.42 85.24 0.46 1.83 16 21 N -0.84 -45.33 10.59 21.82 0.23 -45.10 16 22 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 C -0.22 -12.16 9.74 22.48 0.22 -11.94 16 27 C -0.10 -5.07 8.61 22.14 0.19 -4.88 16 28 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 29 H 0.07 0.62 7.66 -2.39 -0.02 0.61 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.15 1.35 6.30 -2.91 -0.02 1.34 16 32 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 1.75 6.17 -2.91 -0.02 1.73 16 35 H 0.11 3.65 7.10 -2.91 -0.02 3.63 16 36 H 0.17 2.89 6.08 -2.91 -0.02 2.87 16 37 H 0.42 10.90 8.79 -92.71 -0.82 10.08 16 38 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.12 6.71 6.13 -2.91 -0.02 6.69 16 40 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 41 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.10 5.40 6.22 -2.91 -0.02 5.38 16 Total: -1.00 -76.16 358.93 4.68 -71.48 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.25 Total: 33.86 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 4.72 Total: -41.46 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.39 Total: -69.51 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.93 Total: -36.44 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -76.16 4.68 -71.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004672385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.124 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds