Wall clock time and date at job start Tue Mar 31 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 103.00272 * 2 1 4 4 C 1.38918 * 120.02809 * 179.97438 * 3 2 1 5 5 C 1.38088 * 119.97443 * 180.30152 * 4 3 2 6 6 C 1.38715 * 120.02472 * 359.44132 * 5 4 3 7 7 O 1.36003 * 119.97422 * 180.25620 * 6 5 4 8 8 C 1.42900 * 116.99847 * 174.92539 * 7 6 5 9 9 H 1.09005 * 109.47303 * 324.79667 * 8 7 6 10 10 C 1.53006 * 109.47209 * 84.79787 * 8 7 6 11 11 C 1.50702 * 109.47259 * 204.79560 * 8 7 6 12 12 O 1.21285 * 119.99955 * 359.97438 * 11 8 7 13 13 N 1.34774 * 119.99896 * 180.02562 * 11 8 7 14 14 C 1.46497 * 120.00209 * 359.97438 * 13 11 8 15 15 C 1.46507 * 119.99978 * 180.02562 * 13 11 8 16 16 H 1.09006 * 109.46579 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.47520 * 119.99617 * 15 13 11 18 18 C 1.50699 * 109.47055 * 240.00065 * 15 13 11 19 19 H 1.08005 * 120.00062 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00097 * 179.97438 * 18 15 13 21 21 N 1.31513 * 119.99888 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00076 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47275 * 90.00103 * 22 20 18 24 24 H 1.48501 * 109.46651 * 210.00254 * 22 20 18 25 25 H 1.48497 * 109.46977 * 329.99875 * 22 20 18 26 26 C 1.38715 * 120.04868 * 0.55930 * 6 5 4 27 27 C 1.38088 * 120.02424 * 359.72269 * 26 6 5 28 28 H 1.09002 * 109.47354 * 299.99799 * 1 2 3 29 29 H 1.08998 * 109.46952 * 60.00474 * 1 2 3 30 30 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.01261 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.98996 * 179.70286 * 5 4 3 33 33 H 1.09004 * 109.46493 * 299.99991 * 10 8 7 34 34 H 1.09005 * 109.47086 * 59.99747 * 10 8 7 35 35 H 1.08996 * 109.47452 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.46918 * 90.00656 * 14 13 11 37 37 H 1.09005 * 109.47042 * 209.99850 * 14 13 11 38 38 H 1.08996 * 109.47171 * 330.00114 * 14 13 11 39 39 H 1.09005 * 109.46556 * 59.99918 * 17 15 13 40 40 H 1.08992 * 109.47524 * 179.97438 * 17 15 13 41 41 H 1.08998 * 109.47105 * 300.00371 * 17 15 13 42 42 H 0.96999 * 120.00372 * 180.02562 * 21 20 18 43 43 H 1.07997 * 119.98657 * 179.69906 * 26 6 5 44 44 H 1.08000 * 120.01141 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5387 2.1235 0.0005 5 6 3.8482 3.4693 0.0068 6 6 2.8333 4.4149 0.0009 7 8 3.1392 5.7400 0.0018 8 6 2.0500 6.6574 -0.1171 9 1 1.2892 6.2349 -0.7734 10 6 1.4460 6.9139 1.2651 11 6 2.5482 7.9563 -0.6964 12 8 3.7207 8.0841 -0.9792 13 7 1.6910 8.9764 -0.8994 14 6 0.2749 8.8222 -0.5574 15 6 2.1752 10.2390 -1.4632 16 1 3.2462 10.1654 -1.6521 17 6 1.4437 10.5252 -2.7761 18 6 1.9133 11.3577 -0.4880 19 1 1.4338 11.1491 0.4570 20 6 2.2859 12.6474 -0.8021 21 7 2.8703 12.9013 -1.9526 22 14 1.9607 14.0342 0.4063 23 1 3.1263 14.1833 1.3142 24 1 1.7488 15.3009 -0.3393 25 1 0.7483 13.7210 1.2046 26 6 1.5066 4.0099 0.0004 27 6 1.1948 2.6647 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.3291 1.3875 0.0005 32 1 4.8808 3.7858 0.0121 33 1 1.0857 5.9743 1.6841 34 1 2.2069 7.3364 1.9214 35 1 0.6149 7.6133 1.1744 36 1 0.1146 9.1331 0.4750 37 1 -0.3287 9.4414 -1.2211 38 1 -0.0149 7.7777 -0.6715 39 1 0.3728 10.5988 -2.5867 40 1 1.8036 11.4647 -3.1953 41 1 1.6331 9.7160 -3.4814 42 1 3.1328 13.8086 -2.1735 43 1 0.7172 4.7469 0.0007 44 1 0.1618 2.3496 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076992160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:44 Heat of formation + Delta-G solvation = -35.209987 kcal Electronic energy + Delta-G solvation = -25018.586489 eV Core-core repulsion = 21449.292196 eV Total energy + Delta-G solvation = -3569.294293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57830 -39.09575 -37.32847 -35.39939 -33.35038 -32.03504 -31.18876 -30.20403 -29.19536 -28.83365 -26.49344 -25.29735 -24.50727 -23.08461 -22.59832 -20.85240 -18.66119 -18.60448 -17.51237 -16.81137 -16.18037 -15.94835 -15.54523 -15.30886 -15.06309 -14.72902 -14.50216 -14.28985 -14.11026 -13.94455 -13.47638 -13.29129 -13.01602 -12.84391 -12.70546 -12.44929 -12.30423 -12.08950 -11.87170 -11.63147 -11.44183 -11.10246 -11.09772 -10.99555 -10.80493 -10.76780 -10.53094 -10.28613 -10.20612 -9.37199 -9.24156 -9.19477 -8.92790 -8.46732 -7.70801 -7.42261 -6.11420 -4.19818 1.09058 1.09605 1.27273 2.14065 2.86962 3.20181 3.24668 3.31543 3.32976 3.49381 3.98617 4.35810 4.50666 4.61277 4.68295 4.68657 4.73111 4.88430 5.00309 5.03325 5.17398 5.20090 5.26898 5.35104 5.49287 5.59485 5.60083 5.72598 5.87257 5.89711 6.05372 6.06510 6.15067 6.23400 6.46284 6.69767 6.74913 6.97982 7.24833 7.38331 7.46099 7.65654 7.95606 8.12542 8.40043 8.76275 8.92921 9.46687 10.94006 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.002406 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.370924 B =11632.628071 C =11813.850929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.127 6.127 3 C -0.129 4.129 4 C -0.057 4.057 5 C -0.133 4.133 6 C 0.139 3.861 7 O -0.280 6.280 8 C 0.067 3.933 9 H 0.092 0.908 10 C -0.187 4.187 11 C 0.509 3.491 12 O -0.528 6.528 13 N -0.587 5.587 14 C 0.080 3.920 15 C 0.259 3.741 16 H 0.065 0.935 17 C -0.148 4.148 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.196 4.196 27 C -0.090 4.090 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.095 0.905 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.134 0.866 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -22.033 4.214 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.113 5.887 3 C -0.242 4.242 4 C -0.080 4.080 5 C -0.154 4.154 6 C 0.090 3.910 7 O -0.192 6.192 8 C 0.007 3.993 9 H 0.110 0.890 10 C -0.244 4.244 11 C 0.293 3.707 12 O -0.405 6.405 13 N -0.320 5.320 14 C -0.063 4.063 15 C 0.160 3.840 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.216 4.216 27 C -0.113 4.113 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.152 0.848 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.625 -22.720 3.954 23.994 hybrid contribution -1.424 1.948 0.656 2.501 sum -8.049 -20.772 4.610 22.749 Atomic orbital electron populations 1.23643 0.94908 1.06960 1.05619 1.85371 1.06315 1.03515 1.93533 1.21478 0.96587 0.96207 1.09892 1.20543 0.94347 0.94966 0.98175 1.20424 0.99170 0.90744 1.05012 1.19158 0.93127 0.83854 0.94821 1.86283 1.34014 1.12100 1.86803 1.22339 0.88679 0.89641 0.98666 0.89048 1.22580 1.02910 1.03443 0.95474 1.19802 0.86771 0.84331 0.79769 1.90697 1.16575 1.81919 1.51278 1.48155 1.07556 1.14656 1.61652 1.21775 0.83370 1.00008 1.01168 1.19001 0.96466 0.77681 0.90901 0.91757 1.22106 0.98906 1.01988 0.97611 1.21284 1.40472 0.91835 1.02906 0.92216 1.24897 0.94776 0.98659 0.95456 1.69873 1.40211 1.20828 1.21590 0.86476 0.78625 0.81268 0.80904 1.20574 1.21104 1.19931 1.21229 0.95618 0.96646 1.08096 1.20909 0.98171 0.92225 1.00003 0.89815 0.89791 0.87534 0.84836 0.84292 0.91407 0.90611 0.88938 0.92579 0.90445 0.93070 0.95007 0.88630 0.96892 0.92607 0.84802 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.15 101.05 0.92 0.10 16 2 S -0.13 -1.14 22.56 -107.50 -2.43 -3.57 16 3 C -0.13 -1.39 6.11 -39.08 -0.24 -1.63 16 4 C -0.06 -0.63 9.79 -39.38 -0.39 -1.01 16 5 C -0.13 -1.67 9.98 -39.46 -0.39 -2.07 16 6 C 0.14 1.92 6.60 -39.23 -0.26 1.66 16 7 O -0.28 -4.71 9.34 -39.66 -0.37 -5.08 16 8 C 0.07 1.03 1.84 -27.88 -0.05 0.98 16 9 H 0.09 1.18 5.57 -51.93 -0.29 0.90 16 10 C -0.19 -2.39 8.80 37.16 0.33 -2.06 16 11 C 0.51 10.62 7.15 -10.99 -0.08 10.54 16 12 O -0.53 -13.56 15.83 -14.36 -0.23 -13.78 16 13 N -0.59 -12.13 2.75 -175.26 -0.48 -12.61 16 14 C 0.08 1.24 8.04 59.85 0.48 1.72 16 15 C 0.26 6.50 2.63 -69.08 -0.18 6.32 16 16 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.45 8.95 37.16 0.33 -3.11 16 18 C -0.53 -13.92 8.37 -34.44 -0.29 -14.21 16 19 H 0.06 1.54 7.65 -52.48 -0.40 1.14 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.20 -2.25 8.23 -39.46 -0.32 -2.57 16 27 C -0.09 -0.92 9.36 -39.38 -0.37 -1.28 16 28 H 0.08 0.43 7.75 -51.92 -0.40 0.03 16 29 H 0.08 0.45 7.75 -51.92 -0.40 0.04 16 30 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.07 4.53 -51.93 -0.24 0.83 16 36 H 0.06 0.82 6.95 -51.93 -0.36 0.46 16 37 H 0.08 1.21 6.42 -51.93 -0.33 0.87 16 38 H 0.05 0.59 6.01 -51.93 -0.31 0.28 16 39 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 40 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.13 1.31 5.41 -52.49 -0.28 1.03 16 44 H 0.13 0.97 5.87 -52.49 -0.31 0.66 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -32.18 362.25 -8.99 -41.18 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.96 Total: 1.83 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.60 Total: -4.97 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.15 Total: -36.79 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.60 Total: -18.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.43 Total: -3.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.18 -8.99 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076992160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.968 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds