Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30504 * 125.64902 * 2 1 4 4 C 1.34123 * 109.25487 * 180.02562 * 3 2 1 5 5 N 1.48024 * 125.98588 * 180.02562 * 4 3 2 6 6 O 1.21796 * 120.00362 * 0.02562 * 5 4 3 7 7 O 1.21804 * 120.00105 * 180.02562 * 5 4 3 8 8 C 1.34666 * 108.02132 * 359.73062 * 4 3 2 9 9 N 1.35039 * 125.65065 * 179.97438 * 2 1 3 10 10 C 1.46495 * 126.40083 * 0.02562 * 9 2 1 11 11 C 1.50696 * 109.47166 * 84.99566 * 10 9 2 12 12 O 1.21282 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.46967 * 120.59522 * 180.02562 * 13 11 10 15 15 C 1.53374 * 108.63231 * 235.25231 * 14 13 11 16 16 N 1.46972 * 108.63217 * 310.57203 * 15 14 13 17 17 C 1.36935 * 120.59045 * 235.20705 * 16 15 14 18 18 H 1.08002 * 119.99725 * 151.84492 * 17 16 15 19 19 C 1.38804 * 120.00405 * 331.57419 * 17 16 15 20 20 N 1.31622 * 119.99787 * 342.82520 * 19 17 16 21 21 Si 1.86800 * 120.00346 * 162.82771 * 19 17 16 22 22 H 1.48493 * 109.47374 * 89.99790 * 21 19 17 23 23 H 1.48496 * 109.47349 * 210.00137 * 21 19 17 24 24 H 1.48504 * 109.47003 * 329.99893 * 21 19 17 25 25 C 1.46962 * 118.81330 * 55.48066 * 16 15 14 26 26 C 1.46958 * 120.59366 * 0.02562 * 13 11 10 27 27 H 1.08999 * 109.47118 * 269.99587 * 1 2 3 28 28 H 1.08993 * 109.47208 * 29.99917 * 1 2 3 29 29 H 1.09002 * 109.46949 * 150.00477 * 1 2 3 30 30 H 1.08000 * 126.58824 * 180.26930 * 8 4 3 31 31 H 1.09000 * 109.46720 * 324.99725 * 10 9 2 32 32 H 1.09000 * 109.47686 * 204.99697 * 10 9 2 33 33 H 1.08996 * 109.60899 * 115.50126 * 14 13 11 34 34 H 1.09001 * 109.60456 * 354.99104 * 14 13 11 35 35 H 1.09002 * 109.60640 * 190.83592 * 15 14 13 36 36 H 1.08999 * 109.75615 * 70.39807 * 15 14 13 37 37 H 0.96999 * 119.99847 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.60973 * 64.26416 * 25 16 15 39 39 H 1.08995 * 109.61395 * 184.77560 * 25 16 15 40 40 H 1.09002 * 109.60988 * 244.49705 * 26 13 11 41 41 H 1.09006 * 109.61277 * 4.83592 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7268 1.5855 -0.0002 6 8 4.5653 2.7927 0.0011 7 8 5.8531 1.1218 -0.0013 8 6 3.5926 -0.6642 0.0051 9 7 2.2941 -1.0973 0.0005 10 6 1.8426 -2.4910 0.0006 11 6 1.5704 -2.9309 -1.4148 12 8 1.7376 -2.1567 -2.3333 13 7 1.1412 -4.1848 -1.6600 14 6 0.8723 -4.6279 -3.0353 15 6 -0.5658 -5.1560 -3.1076 16 7 -0.7737 -6.1046 -2.0044 17 6 -1.2106 -7.3782 -2.2535 18 1 -0.9447 -8.1813 -1.5821 19 6 -1.9999 -7.6362 -3.3658 20 7 -2.6070 -6.6465 -3.9857 21 14 -2.2007 -9.3879 -3.9828 22 1 -3.3694 -10.0165 -3.3166 23 1 -2.4169 -9.3735 -5.4519 24 1 -0.9751 -10.1662 -3.6705 25 6 -0.5101 -5.6599 -0.6287 26 6 0.9338 -5.1335 -0.5570 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.4777 -1.2830 0.0103 31 1 0.9296 -2.5770 0.5898 32 1 2.6165 -3.1236 0.4352 33 1 1.5679 -5.4221 -3.3063 34 1 0.9882 -3.7873 -3.7195 35 1 -0.7219 -5.6627 -4.0600 36 1 -1.2678 -4.3273 -3.0146 37 1 -3.1583 -6.8267 -4.7633 38 1 -1.2061 -4.8647 -0.3616 39 1 -0.6295 -6.4992 0.0563 40 1 1.6337 -5.9637 -0.6520 41 1 1.0932 -4.6278 0.3954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265793505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = 47.559337 kcal Electronic energy + Delta-G solvation = -27445.084911 eV Core-core repulsion = 23365.379302 eV Total energy + Delta-G solvation = -4079.705609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.14261 -42.88960 -41.11661 -38.54940 -37.69407 -35.77516 -35.60898 -33.36446 -33.10264 -32.22034 -29.92661 -29.48774 -28.43704 -26.59742 -25.44462 -24.45082 -22.99138 -22.67843 -21.63200 -20.48908 -19.98915 -19.56075 -19.14289 -18.74597 -18.07814 -17.81423 -16.89059 -16.67542 -16.60490 -16.30151 -15.60639 -15.49547 -15.26990 -15.04099 -14.89078 -14.67381 -14.26085 -13.74513 -13.49161 -13.40356 -13.37230 -13.15552 -12.81893 -12.66376 -12.57037 -12.48891 -12.35430 -12.33429 -12.04200 -11.94166 -11.84592 -11.72030 -11.68001 -10.83259 -10.61193 -10.19528 -9.92688 -8.66852 -7.90037 -5.37425 -0.94919 0.03312 0.43607 1.16065 1.36319 1.42375 1.47214 1.50790 1.58023 1.95264 2.50290 2.98115 3.17851 3.22030 3.26540 3.53645 3.59865 3.67831 3.96921 4.22210 4.22483 4.25617 4.36552 4.50340 4.52785 4.54679 4.58254 4.64688 4.77387 4.82962 4.90952 5.08286 5.23534 5.28321 5.40060 5.48115 5.60485 5.66205 6.09299 6.35202 6.35878 6.63741 6.94347 7.09804 7.80550 8.30964 9.14935 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.033375 B = 0.002548 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.745490 B =10988.403833 C =11124.995407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.266 3.734 3 N -0.495 5.495 4 C 0.004 3.996 5 N 0.070 4.930 6 O -0.201 6.201 7 O -0.140 6.140 8 C 0.100 3.900 9 N -0.425 5.425 10 C 0.084 3.916 11 C 0.491 3.509 12 O -0.585 6.585 13 N -0.589 5.589 14 C 0.105 3.895 15 C 0.170 3.830 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.077 0.923 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.267 1.267 25 C 0.121 3.879 26 C 0.092 3.908 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.243 0.757 31 H 0.174 0.826 32 H 0.184 0.816 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.064 0.936 36 H -0.005 1.005 37 H 0.249 0.751 38 H 0.025 0.975 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 4.039 13.771 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.001 3.999 3 N -0.216 5.216 4 C -0.204 4.204 5 N 0.586 4.414 6 O -0.407 6.407 7 O -0.360 6.360 8 C -0.044 4.044 9 N -0.106 5.106 10 C -0.040 4.040 11 C 0.278 3.722 12 O -0.465 6.465 13 N -0.321 5.321 14 C -0.020 4.020 15 C 0.043 3.957 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.095 0.905 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.192 1.192 25 C -0.005 4.005 26 C -0.031 4.031 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.259 0.741 31 H 0.191 0.809 32 H 0.201 0.799 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.013 0.987 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.951 4.738 13.177 16.103 hybrid contribution 0.022 -1.080 -1.256 1.657 sum 7.974 3.658 11.921 14.801 Atomic orbital electron populations 1.20569 0.80817 1.05479 1.06403 1.24010 0.97306 0.78983 0.99633 1.69624 0.99546 1.30886 1.21507 1.20672 0.87366 0.88253 1.24076 1.42460 1.01074 1.00951 0.96901 1.94578 1.92886 0.97279 1.55910 1.94489 1.08252 1.80417 1.52809 1.22874 0.90111 0.92847 0.98550 1.45391 1.04975 1.08707 1.51481 1.22466 1.08545 0.78164 0.94787 1.21154 0.77465 0.81647 0.91897 1.90789 1.54616 1.53506 1.47601 1.48085 1.63563 1.11627 1.08808 1.22086 0.98216 0.98637 0.83057 1.20851 0.90505 0.90917 0.93438 1.44267 1.77205 1.10392 1.01470 1.19533 1.24099 0.85727 1.09460 0.90512 1.25787 0.97012 1.00387 1.01399 1.70155 1.33144 1.32245 1.22676 0.85363 0.78136 0.80739 0.76703 1.21305 1.22668 1.19187 1.21656 0.93991 0.98429 0.86427 1.22698 0.98130 0.93067 0.89183 0.85697 0.88656 0.89340 0.74063 0.80911 0.79887 0.91440 0.91140 0.91808 0.98665 0.94201 0.95660 0.90032 0.89989 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.04 71.24 0.71 -0.33 16 2 C 0.27 5.55 7.89 138.13 1.09 6.64 16 3 N -0.49 -14.10 11.23 -178.85 -2.01 -16.10 16 4 C 0.00 0.12 8.02 128.16 1.03 1.15 16 5 N 0.07 2.15 4.45 -50.71 -0.23 1.92 16 6 O -0.20 -7.01 19.24 18.89 0.36 -6.65 16 7 O -0.14 -3.91 19.02 18.88 0.36 -3.55 16 8 C 0.10 1.79 11.25 83.09 0.93 2.73 16 9 N -0.42 -6.84 2.24 -518.36 -1.16 -8.00 16 10 C 0.08 0.76 4.50 85.63 0.39 1.14 16 11 C 0.49 10.63 7.77 87.65 0.68 11.31 16 12 O -0.58 -18.96 15.83 -3.04 -0.05 -19.01 16 13 N -0.59 -14.15 2.95 -817.07 -2.41 -16.56 16 14 C 0.10 3.49 6.59 86.42 0.57 4.06 16 15 C 0.17 7.25 5.51 86.41 0.48 7.73 16 16 N -0.61 -25.42 2.96 -697.26 -2.06 -27.48 16 17 C -0.26 -12.29 9.57 84.03 0.80 -11.48 16 18 H 0.08 3.46 7.89 -2.91 -0.02 3.44 16 19 C -0.05 -2.56 4.91 84.86 0.42 -2.15 16 20 N -0.94 -51.74 11.20 21.65 0.24 -51.49 16 21 Si 0.96 41.23 29.59 68.60 2.03 43.26 16 22 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 C 0.12 3.41 6.70 86.58 0.58 3.99 16 26 C 0.09 1.62 6.52 86.58 0.56 2.18 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.22 7.83 -2.39 -0.02 1.20 16 30 H 0.24 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.17 0.38 7.50 -2.39 -0.02 0.36 16 32 H 0.18 -0.05 7.90 -2.39 -0.02 -0.07 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.51 6.99 -2.39 -0.02 2.50 16 35 H 0.06 3.21 6.00 -2.39 -0.01 3.19 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 38 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 2.13 7.93 -2.39 -0.02 2.11 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.13 0.70 5.91 -2.38 -0.01 0.69 16 Total: -1.00 -80.39 352.46 4.39 -76.00 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.07 Total: 0.71 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 8.25 Total: 26.95 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -7.63 Total: -117.72 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.67 Total: -29.21 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -80.39 4.39 -76.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265793505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.557 kcal (2) G-P(sol) polarization free energy of solvation -80.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds