Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99869 * 2 1 4 4 H 1.48506 * 109.47359 * 269.99984 * 3 2 1 5 5 H 1.48500 * 109.47487 * 29.99852 * 3 2 1 6 6 H 1.48502 * 109.47284 * 150.00023 * 3 2 1 7 7 C 1.38812 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 197.58156 * 7 2 1 9 9 N 1.36942 * 119.99669 * 17.58020 * 7 2 1 10 10 C 1.46961 * 120.59175 * 208.20196 * 9 7 2 11 11 C 1.53377 * 108.63868 * 235.25132 * 10 9 7 12 12 N 1.46967 * 108.63315 * 310.58185 * 11 10 9 13 13 C 1.34771 * 120.59166 * 235.20011 * 12 11 10 14 14 O 1.21287 * 119.99874 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99979 * 179.72385 * 13 12 11 16 16 C 1.53005 * 109.46960 * 180.27687 * 15 13 12 17 17 N 1.46503 * 109.46984 * 180.02562 * 16 15 13 18 18 C 1.34943 * 126.03879 * 124.99511 * 17 16 15 19 19 C 1.35317 * 107.74727 * 179.97438 * 18 17 16 20 20 N 1.48021 * 126.04275 * 179.97438 * 19 18 17 21 21 O 1.21801 * 119.99700 * 359.97438 * 20 19 18 22 22 O 1.21792 * 120.00297 * 180.02562 * 20 19 18 23 23 C 1.39867 * 107.92065 * 359.97438 * 19 18 17 24 24 N 1.30840 * 108.20021 * 359.74536 * 23 19 18 25 25 C 1.46966 * 118.81316 * 55.47194 * 12 11 10 26 26 C 1.46964 * 120.59620 * 28.23600 * 9 7 2 27 27 H 0.96994 * 119.99838 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60813 * 115.50868 * 10 9 7 29 29 H 1.09005 * 109.75532 * 355.08375 * 10 9 7 30 30 H 1.08992 * 109.60903 * 190.83287 * 11 10 9 31 31 H 1.08999 * 109.74865 * 70.40692 * 11 10 9 32 32 H 1.08998 * 109.47039 * 300.27548 * 15 13 12 33 33 H 1.08997 * 109.47087 * 60.27599 * 15 13 12 34 34 H 1.08998 * 109.47131 * 299.99804 * 16 15 13 35 35 H 1.08997 * 109.47293 * 60.00038 * 16 15 13 36 36 H 1.08003 * 126.13089 * 359.97438 * 18 17 16 37 37 H 1.07998 * 125.90221 * 180.02562 * 23 19 18 38 38 H 1.08999 * 109.60347 * 64.26868 * 25 12 11 39 39 H 1.08996 * 109.60511 * 184.77680 * 25 12 11 40 40 H 1.09004 * 109.60872 * 244.49569 * 26 9 7 41 41 H 1.09008 * 109.60667 * 4.82478 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0524 -1.2238 0.2831 9 7 1.3735 -2.3605 -0.3572 10 6 1.8123 -3.6536 0.1861 11 6 2.1175 -4.5983 -0.9831 12 7 0.9835 -4.5706 -1.9176 13 6 0.3575 -5.7107 -2.2703 14 8 0.7285 -6.7721 -1.8154 15 6 -0.8079 -5.6662 -3.2247 16 6 -1.3364 -7.0842 -3.4509 17 7 -2.4689 -7.0409 -4.3792 18 6 -2.5800 -7.7383 -5.5291 19 6 -3.7691 -7.4203 -6.0912 20 7 -4.3010 -7.9547 -7.3649 21 8 -3.6491 -8.7579 -8.0079 22 8 -5.3901 -7.5905 -7.7706 23 6 -4.4068 -6.4973 -5.2559 24 7 -3.6309 -6.2736 -4.2264 25 6 0.5483 -3.2780 -2.4651 26 6 0.2396 -2.3329 -1.2917 27 1 -0.4849 0.8400 -0.0004 28 1 1.0205 -4.0789 0.8028 29 1 2.7103 -3.5147 0.7882 30 1 2.2574 -5.6118 -0.6075 31 1 3.0218 -4.2700 -1.4954 32 1 -1.5993 -5.0464 -2.8032 33 1 -0.4829 -5.2436 -4.1754 34 1 -0.5450 -7.7039 -3.8724 35 1 -1.6613 -7.5068 -2.5002 36 1 -1.8505 -8.4270 -5.9292 37 1 -5.3747 -6.0503 -5.4283 38 1 1.3430 -2.8551 -3.0797 39 1 -0.3482 -3.4197 -3.0685 40 1 -0.6642 -2.6641 -0.7801 41 1 0.0978 -1.3186 -1.6649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265798294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = 55.146384 kcal Electronic energy + Delta-G solvation = -26705.108675 eV Core-core repulsion = 22625.732065 eV Total energy + Delta-G solvation = -4079.376610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.43235 -42.38319 -41.16039 -38.57284 -37.52647 -35.76738 -35.65631 -33.38596 -32.39067 -32.13132 -31.37266 -28.84149 -27.36090 -26.02676 -25.20237 -24.33063 -22.67338 -22.60609 -21.91166 -20.23051 -19.96651 -19.48498 -18.93987 -18.54544 -17.97861 -17.39777 -17.28189 -16.75525 -16.60930 -16.18716 -15.72805 -15.49455 -15.37252 -15.06237 -14.84832 -14.53729 -14.45169 -13.83908 -13.66941 -13.31694 -13.16411 -12.95401 -12.69559 -12.63870 -12.53128 -12.40945 -12.24371 -12.21038 -12.05031 -12.02444 -11.92067 -11.69731 -11.12685 -10.96780 -10.62508 -10.57147 -9.88846 -8.69438 -7.92032 -5.39926 -0.80505 0.21134 0.37674 1.13829 1.22895 1.46412 1.49253 1.51121 1.57225 1.99051 2.48969 2.94811 3.22899 3.34462 3.42135 3.50771 3.56757 3.63890 3.91975 4.01389 4.17170 4.20524 4.27239 4.35228 4.50143 4.53884 4.60874 4.63131 4.72072 4.78767 4.80487 5.04240 5.19879 5.22596 5.39465 5.47556 5.57289 5.62720 5.95612 6.32705 6.41141 6.60680 7.03261 7.08350 7.76073 8.28356 9.12978 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.002411 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.773036 B =11612.824716 C =12564.245769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.106 3.894 12 N -0.600 5.600 13 C 0.519 3.481 14 O -0.580 6.580 15 C -0.146 4.146 16 C 0.148 3.852 17 N -0.341 5.341 18 C 0.179 3.821 19 C -0.215 4.215 20 N 0.075 4.925 21 O -0.186 6.186 22 O -0.195 6.195 23 C 0.117 3.883 24 N -0.290 5.290 25 C 0.096 3.904 26 C 0.161 3.839 27 H 0.252 0.748 28 H 0.009 0.991 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.242 0.758 37 H 0.226 0.774 38 H 0.072 0.928 39 H 0.105 0.895 40 H -0.001 1.001 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -14.378 -11.348 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.018 4.018 12 N -0.331 5.331 13 C 0.308 3.692 14 O -0.462 6.462 15 C -0.186 4.186 16 C 0.029 3.971 17 N -0.118 5.118 18 C 0.023 3.977 19 C -0.314 4.314 20 N 0.586 4.414 21 O -0.397 6.397 22 O -0.404 6.404 23 C -0.072 4.072 24 N -0.109 5.109 25 C -0.028 4.028 26 C 0.034 3.966 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.258 0.742 37 H 0.243 0.757 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.018 0.982 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.414 -13.875 -9.259 16.855 hybrid contribution -0.185 0.751 -0.630 0.997 sum -2.600 -13.124 -9.889 16.637 Atomic orbital electron populations 1.70151 1.06604 1.26094 1.54969 1.25773 0.95995 1.01443 1.00921 0.85279 0.78025 0.79494 0.77681 1.20866 1.22483 1.19537 1.19510 0.93133 0.85718 1.41075 0.91299 1.44267 1.36889 1.02161 1.49986 1.21380 0.98071 0.86211 0.93964 1.22025 0.88209 1.00579 0.90949 1.48109 1.32908 1.07206 1.44916 1.20600 0.83740 0.82947 0.81899 1.90672 1.67908 1.29977 1.57625 1.21828 0.96793 0.98830 1.01138 1.21914 0.84058 0.97766 0.93387 1.49063 1.15223 1.30791 1.16772 1.22965 0.96157 0.93411 0.85148 1.21184 1.01692 1.14973 0.93533 1.42669 0.99678 0.98184 1.00915 1.94528 1.58907 1.29278 1.56999 1.94551 1.08254 1.63959 1.73595 1.24373 1.00933 0.93423 0.88507 1.77844 0.94243 1.16864 1.21953 1.22554 1.00823 0.82763 0.96656 1.21102 0.88051 0.98479 0.88924 0.93907 0.97311 0.90993 0.89023 0.90971 0.87486 0.86099 0.83844 0.87745 0.74230 0.75749 0.90967 0.87675 0.98249 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.88 11.20 21.65 0.24 -51.64 16 2 C -0.05 -2.38 4.90 84.86 0.42 -1.96 16 3 Si 0.97 42.28 29.59 68.60 2.03 44.31 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.26 -13.54 9.58 84.03 0.80 -12.73 16 8 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -28.22 2.97 -697.33 -2.07 -30.29 16 10 C 0.13 5.04 6.67 86.42 0.58 5.62 16 11 C 0.11 3.36 6.59 86.42 0.57 3.93 16 12 N -0.60 -17.68 2.94 -817.17 -2.40 -20.09 16 13 C 0.52 13.17 7.70 87.66 0.67 13.85 16 14 O -0.58 -17.24 15.39 -3.05 -0.05 -17.28 16 15 C -0.15 -2.46 4.23 29.85 0.13 -2.33 16 16 C 0.15 1.88 5.80 86.38 0.50 2.38 16 17 N -0.34 -4.68 3.68 -348.05 -1.28 -5.96 16 18 C 0.18 2.03 11.13 83.54 0.93 2.96 16 19 C -0.22 -3.58 7.11 36.10 0.26 -3.33 16 20 N 0.07 1.62 4.45 -47.13 -0.21 1.41 16 21 O -0.19 -4.21 19.02 18.89 0.36 -3.85 16 22 O -0.20 -4.75 19.05 18.90 0.36 -4.39 16 23 C 0.12 1.87 11.75 85.24 1.00 2.88 16 24 N -0.29 -5.23 12.42 -57.02 -0.71 -5.94 16 25 C 0.10 2.89 6.54 86.56 0.57 3.46 16 26 C 0.16 6.86 5.54 86.56 0.48 7.34 16 27 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.07 2.67 7.94 -2.38 -0.02 2.65 16 30 H 0.09 2.76 6.99 -2.39 -0.02 2.74 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.04 7.73 -2.39 -0.02 2.02 16 33 H 0.12 1.59 7.90 -2.39 -0.02 1.57 16 34 H 0.14 1.12 8.03 -2.39 -0.02 1.10 16 35 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.24 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.23 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 2.46 5.91 -2.39 -0.01 2.44 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.07 3.55 5.98 -2.38 -0.01 3.53 16 Total: -1.00 -68.75 353.02 4.24 -64.52 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.06 Total: 7.14 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.90 Total: 22.05 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.43 Total: -112.50 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.67 Total: -25.53 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -68.75 4.24 -64.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265798294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.662 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds