Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86792 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47236 * 299.99874 * 3 2 1 6 6 H 1.48503 * 109.47220 * 60.00286 * 3 2 1 7 7 C 1.38956 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00277 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00067 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47150 * 180.02562 * 12 10 9 14 14 C 1.46838 * 111.00091 * 169.99542 * 13 12 10 15 15 C 1.53043 * 109.52624 * 185.83554 * 14 13 12 16 16 C 1.53124 * 109.27327 * 300.82315 * 15 14 13 17 17 N 1.46501 * 109.51738 * 177.55722 * 16 15 14 18 18 C 1.34953 * 126.03721 * 274.99989 * 17 16 15 19 19 C 1.35312 * 107.74266 * 180.23042 * 18 17 16 20 20 C 1.39864 * 107.92555 * 359.58049 * 19 18 17 21 21 N 1.48018 * 125.90473 * 180.16634 * 20 19 18 22 22 O 1.21796 * 120.00259 * 180.32195 * 21 20 19 23 23 O 1.21801 * 119.99535 * 0.32854 * 21 20 19 24 24 N 1.30838 * 108.19852 * 0.42314 * 20 19 18 25 25 C 1.53118 * 109.16283 * 57.65316 * 16 15 14 26 26 C 1.46849 * 110.99506 * 294.20401 * 13 12 10 27 27 H 0.96999 * 119.99815 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99773 * 0.02562 * 9 7 2 29 29 H 1.08990 * 109.47379 * 59.99446 * 12 10 9 30 30 H 1.09000 * 109.46315 * 299.99343 * 12 10 9 31 31 H 1.09007 * 109.46370 * 65.82257 * 14 13 12 32 32 H 1.09001 * 109.45923 * 305.84550 * 14 13 12 33 33 H 1.08995 * 109.50677 * 180.88195 * 15 14 13 34 34 H 1.08996 * 109.53146 * 60.78065 * 15 14 13 35 35 H 1.08994 * 109.52124 * 297.67779 * 16 15 14 36 36 H 1.08002 * 126.12372 * 359.96015 * 18 17 16 37 37 H 1.08008 * 126.03671 * 179.71187 * 19 18 17 38 38 H 1.09003 * 109.50401 * 62.28533 * 25 16 15 39 39 H 1.08999 * 109.49891 * 182.40027 * 25 16 15 40 40 H 1.09001 * 109.46425 * 294.17646 * 26 13 12 41 41 H 1.09003 * 109.46560 * 54.15659 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2099 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0004 14 6 1.5136 -7.2569 0.2372 15 6 2.5499 -8.3744 0.3761 16 6 3.3846 -8.4518 -0.9053 17 7 4.4164 -9.4810 -0.7560 18 6 5.6284 -9.3134 -0.1865 19 6 6.2812 -10.4969 -0.2502 20 6 5.4358 -11.4219 -0.8715 21 7 5.7522 -12.8425 -1.1410 22 8 4.9343 -13.5538 -1.6965 23 8 6.8304 -13.3002 -0.8072 24 7 4.3191 -10.8131 -1.1782 25 6 4.0479 -7.0947 -1.1558 26 6 2.9681 -6.0143 -1.2503 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6171 -4.9205 -0.8912 30 1 0.6166 -4.9208 0.8887 31 1 0.8529 -7.4765 -0.6015 32 1 0.9271 -7.1896 1.1536 33 1 2.0410 -9.3248 0.5368 34 1 3.2024 -8.1631 1.2232 35 1 2.7384 -8.7033 -1.7463 36 1 6.0106 -8.3974 0.2394 37 1 7.2781 -10.6932 0.1160 38 1 4.7239 -6.8626 -0.3329 39 1 4.6092 -7.1309 -2.0895 40 1 2.3006 -6.2397 -2.0820 41 1 3.4382 -5.0447 -1.4143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331109934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = 57.052823 kcal Electronic energy + Delta-G solvation = -26550.717439 eV Core-core repulsion = 22471.423498 eV Total energy + Delta-G solvation = -4079.293941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -42.72215 -41.80715 -39.47896 -37.85859 -36.86886 -34.92520 -33.94021 -31.69506 -31.41205 -31.11814 -30.86091 -28.14258 -26.66505 -24.73953 -23.64658 -23.42747 -22.03349 -21.65798 -20.00188 -19.35918 -18.90035 -18.78662 -17.98930 -17.96011 -17.47319 -16.30705 -15.82100 -15.58118 -15.24240 -14.81501 -14.49036 -14.20764 -14.13227 -14.02431 -13.72019 -13.50943 -13.48674 -12.63527 -12.15896 -11.95950 -11.93617 -11.84731 -11.69113 -11.61290 -11.50624 -11.47439 -11.44962 -11.21696 -11.12535 -10.84380 -10.43034 -10.33269 -10.32326 -9.60157 -9.51744 -8.65118 -8.13994 -8.04296 -6.52531 -3.93721 -0.22732 0.46672 1.15827 1.96034 1.96740 3.08198 3.19936 3.26044 3.68562 3.70542 3.77574 4.08436 4.11429 4.21321 4.41550 4.56930 4.72683 4.79000 4.79330 4.93263 4.97994 5.09270 5.13145 5.26780 5.31590 5.36305 5.41980 5.57518 5.62742 5.69157 5.75157 5.92712 6.01037 6.09361 6.12674 6.19002 6.48833 6.99057 7.11436 7.37939 7.45050 7.94673 8.48986 9.06770 9.42129 9.92554 10.64967 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.038699 B = 0.002057 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.362829 B =13609.359188 C =14083.854180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.058 3.942 15 C -0.124 4.124 16 C 0.151 3.849 17 N -0.314 5.314 18 C 0.079 3.921 19 C -0.218 4.218 20 C 0.113 3.887 21 N 0.059 4.941 22 O -0.134 6.134 23 O -0.135 6.135 24 N -0.217 5.217 25 C -0.121 4.121 26 C 0.057 3.943 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -16.724 -0.503 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.084 4.084 13 N -0.242 5.242 14 C -0.071 4.071 15 C -0.163 4.163 16 C 0.051 3.949 17 N -0.102 5.102 18 C -0.067 4.067 19 C -0.248 4.248 20 C -0.130 4.130 21 N 0.584 4.416 22 O -0.353 6.353 23 O -0.351 6.351 24 N -0.050 5.050 25 C -0.160 4.160 26 C -0.071 4.071 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.218 0.782 37 H 0.192 0.808 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.603 -15.887 -0.529 16.548 hybrid contribution -0.092 0.436 -0.331 0.555 sum 4.511 -15.451 -0.860 16.119 Atomic orbital electron populations 1.69613 1.05971 1.28206 1.50272 1.25284 0.95650 0.99827 0.97171 0.85796 0.79688 0.81058 0.77777 1.19198 1.20735 1.20692 1.19738 0.93379 0.82115 1.47731 0.87796 1.41881 1.09256 1.04640 1.63966 1.19680 0.88393 0.84497 0.84790 1.90474 1.13636 1.86847 1.55523 1.21842 0.93806 0.90940 1.01856 1.61530 1.25452 1.01521 1.35697 1.22064 0.94634 0.88634 1.01749 1.22041 0.98354 0.99391 0.96479 1.22024 0.87455 0.84394 1.01045 1.49287 1.13457 1.06123 1.41296 1.22876 0.85568 1.00582 0.97691 1.21255 1.03437 0.90559 1.09583 1.22639 0.96743 0.85133 1.08452 1.42259 1.00351 1.00391 0.98603 1.94611 1.44189 1.56130 1.40350 1.94581 1.10642 1.75323 1.54521 1.77361 1.18596 0.90504 1.18496 1.22034 0.99578 0.90727 1.03665 1.22231 0.94651 1.00890 0.89375 0.91820 0.77456 0.93183 0.89062 0.94451 0.89508 0.90441 0.89738 0.87225 0.78211 0.80779 0.89291 0.90282 0.95198 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.42 13.05 55.50 0.72 -22.70 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -7.88 9.68 -14.93 -0.14 -8.02 16 8 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 9 N -0.56 -13.17 5.29 -10.96 -0.06 -13.23 16 10 C 0.44 9.33 7.46 -10.99 -0.08 9.25 16 11 O -0.58 -13.98 13.90 5.55 0.08 -13.90 16 12 C 0.05 0.71 5.45 -4.97 -0.03 0.68 16 13 N -0.52 -6.88 4.40 -236.11 -1.04 -7.92 16 14 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 15 C -0.12 -1.07 5.70 -26.64 -0.15 -1.22 16 16 C 0.15 1.33 3.27 -67.80 -0.22 1.10 16 17 N -0.31 -3.02 3.53 -54.74 -0.19 -3.22 16 18 C 0.08 0.62 10.59 -17.22 -0.18 0.44 16 19 C -0.22 -1.94 10.52 -40.02 -0.42 -2.36 16 20 C 0.11 1.35 8.15 -146.41 -1.19 0.15 16 21 N 0.06 0.76 4.45 33.02 0.15 0.91 16 22 O -0.13 -1.88 19.23 -29.46 -0.57 -2.45 16 23 O -0.13 -1.70 19.04 -29.46 -0.56 -2.26 16 24 N -0.22 -2.66 12.54 33.01 0.41 -2.24 16 25 C -0.12 -1.15 5.07 -26.65 -0.13 -1.28 16 26 C 0.06 0.72 5.11 -3.83 -0.02 0.70 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.39 8.84 7.90 -40.82 -0.32 8.51 16 29 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.09 1.25 7.99 -51.93 -0.41 0.84 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.20 0.96 7.20 -52.49 -0.38 0.59 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.09 0.85 7.04 -51.93 -0.37 0.49 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.12 1.92 5.78 -51.93 -0.30 1.62 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -30.76 352.67 -8.55 -39.31 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.09 Total: 6.83 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.70 Total: 0.46 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.00 Total: -48.40 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.05 Total: -18.61 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.76 -8.55 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331109934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.363 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds