Wall clock time and date at job start Tue Mar 31 2020 04:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34872 * 117.00186 * 2 1 4 4 O 1.21603 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.46633 * 119.99920 * 180.02562 * 3 2 1 6 6 N 1.37829 * 125.86264 * 0.29625 * 5 3 2 7 7 H 0.97002 * 125.39353 * 0.02562 * 6 5 3 8 8 C 1.34235 * 109.20925 * 180.17651 * 6 5 3 9 9 C 1.50703 * 125.79258 * 179.83831 * 8 6 5 10 10 C 1.38240 * 108.41518 * 359.57235 * 8 6 5 11 11 C 1.47394 * 126.45540 * 180.23909 * 10 8 6 12 12 O 1.21611 * 120.00098 * 90.03002 * 11 10 8 13 13 N 1.34776 * 120.00286 * 270.02483 * 11 10 8 14 14 C 1.46507 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.50691 * 109.46955 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00598 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99812 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99947 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00205 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99946 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00019 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99782 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46991 * 90.00503 * 22 20 18 24 24 H 1.48503 * 109.47140 * 209.99859 * 22 20 18 25 25 H 1.48499 * 109.47453 * 330.00287 * 22 20 18 26 26 C 1.36451 * 125.85756 * 180.02562 * 5 3 2 27 27 C 1.50699 * 126.49546 * 0.02562 * 26 5 3 28 28 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46996 * 300.00064 * 1 2 3 30 30 H 1.09005 * 109.47068 * 59.99704 * 1 2 3 31 31 H 1.09002 * 109.47152 * 269.69165 * 9 8 6 32 32 H 1.09001 * 109.46980 * 149.69265 * 9 8 6 33 33 H 1.09004 * 109.47113 * 29.69246 * 9 8 6 34 34 H 0.97004 * 120.00075 * 0.02562 * 13 11 10 35 35 H 1.08993 * 109.47050 * 300.00874 * 14 13 11 36 36 H 1.09003 * 109.46283 * 60.00543 * 14 13 11 37 37 H 0.97000 * 119.99969 * 359.97438 * 17 15 14 38 38 H 0.97008 * 120.00188 * 179.97438 * 21 20 18 39 39 H 1.09004 * 109.47071 * 269.97855 * 27 26 5 40 40 H 1.08997 * 109.47151 * 29.97587 * 27 26 5 41 41 H 1.08996 * 109.46734 * 149.97864 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5286 1.2784 -0.0006 6 7 4.3934 0.2051 -0.0069 7 1 4.1301 -0.7285 -0.0121 8 6 5.6576 0.6565 -0.0014 9 6 6.8987 -0.1983 -0.0021 10 6 5.6278 2.0386 -0.0012 11 6 6.7942 2.9397 -0.0009 12 8 7.2751 3.3121 -1.0540 13 7 7.3277 3.3512 1.1663 14 6 8.4874 4.2464 1.1666 15 6 8.8855 4.5524 2.5874 16 8 8.2623 4.0698 3.5092 17 7 9.9342 5.3624 2.8338 18 6 10.2967 5.6403 4.1265 19 1 9.7417 5.2106 4.9473 20 6 11.3775 6.4758 4.3806 21 7 11.7247 6.7426 5.6195 22 14 12.3370 7.2197 2.9609 23 1 11.7348 8.5244 2.5863 24 1 13.7489 7.4261 3.3720 25 1 12.2900 6.3000 1.7959 26 6 4.2690 2.4246 -0.0001 27 6 3.7377 3.8348 0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 7.1983 -0.4046 1.0255 32 1 7.7026 0.3287 -0.5161 33 1 6.6929 -1.1373 -0.5161 34 1 6.9443 3.0539 2.0064 35 1 9.3187 3.7642 0.6524 36 1 8.2310 5.1731 0.6531 37 1 10.4329 5.7481 2.0967 38 1 12.4795 7.3256 5.7970 39 1 3.6091 4.1758 -1.0258 40 1 2.7770 3.8605 0.5158 41 1 4.4427 4.4880 0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343513680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:00 Heat of formation + Delta-G solvation = -116.640393 kcal Electronic energy + Delta-G solvation = -26570.365034 eV Core-core repulsion = 22451.246439 eV Total energy + Delta-G solvation = -4119.118595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00511 -40.26661 -39.26023 -38.12767 -36.79494 -34.47792 -33.70291 -33.24233 -32.07186 -31.77676 -28.77451 -28.56892 -27.52193 -26.46000 -24.55607 -22.84894 -21.87160 -19.98622 -19.71476 -19.39358 -18.89583 -18.40838 -17.17841 -16.80008 -16.60888 -15.99045 -15.79242 -15.38855 -15.08285 -14.91624 -14.76883 -14.16093 -13.88536 -13.66286 -13.63047 -13.38273 -13.12621 -13.07173 -13.03778 -12.52605 -12.51167 -12.48410 -12.36906 -12.17074 -12.08711 -11.75091 -11.22894 -11.19526 -10.75695 -10.63831 -10.06446 -9.94805 -9.69126 -9.06040 -8.86427 -8.76200 -8.47247 -8.29860 -6.40119 -3.92634 0.91087 2.00329 2.23198 2.65779 2.75688 2.77001 3.00071 3.04875 3.12990 3.48168 3.57260 4.04165 4.39776 4.47894 4.56229 4.71305 4.75312 4.80666 4.82894 5.10793 5.13427 5.14674 5.23586 5.31062 5.48401 5.62671 5.69446 5.71463 5.78895 5.82068 5.85204 5.95270 6.09251 6.32692 6.52942 6.58627 6.98069 7.42014 7.44794 7.78144 8.01173 8.38611 8.47682 8.82532 9.30562 9.64333 10.72029 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002430 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.451549 B =11518.326785 C =11786.414116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.538 3.462 4 O -0.494 6.494 5 C -0.057 4.057 6 N -0.517 5.517 7 H 0.426 0.574 8 C 0.119 3.881 9 C -0.100 4.100 10 C -0.223 4.223 11 C 0.594 3.406 12 O -0.542 6.542 13 N -0.699 5.699 14 C 0.105 3.895 15 C 0.438 3.562 16 O -0.577 6.577 17 N -0.577 5.577 18 C -0.309 4.309 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C -0.011 4.011 27 C -0.100 4.100 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.106 -15.244 -13.861 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.384 3.616 4 O -0.382 6.382 5 C -0.165 4.165 6 N -0.113 5.113 7 H 0.265 0.735 8 C -0.004 4.004 9 C -0.157 4.157 10 C -0.233 4.233 11 C 0.378 3.622 12 O -0.420 6.420 13 N -0.352 5.352 14 C -0.023 4.023 15 C 0.224 3.776 16 O -0.462 6.462 17 N -0.215 5.215 18 C -0.438 4.438 19 H 0.139 0.861 20 C -0.160 4.160 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.019 4.019 27 C -0.157 4.157 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.371 -15.004 -13.804 26.147 hybrid contribution 0.400 0.097 -0.562 0.696 sum -15.971 -14.906 -14.366 26.146 Atomic orbital electron populations 1.23276 0.75484 1.03762 1.02895 1.86533 1.24081 1.32846 1.84993 1.19742 0.86779 0.81773 0.73342 1.90890 1.65253 1.35556 1.46488 1.18502 0.86463 0.87461 1.24091 1.41463 1.04900 1.08956 1.55956 0.73549 1.20755 0.85912 0.92971 1.00728 1.20606 0.92454 0.98415 1.04248 1.19205 0.93301 0.92095 1.18669 1.17265 0.81752 0.79661 0.83487 1.90780 1.62307 1.57399 1.31497 1.45742 1.31574 1.48532 1.09379 1.21012 0.89387 0.95160 0.96748 1.19637 0.83943 0.84348 0.89636 1.90547 1.55046 1.55182 1.45383 1.42128 1.27776 1.43054 1.08505 1.19437 1.13718 1.27713 0.82923 0.86087 1.25069 0.97062 0.97101 0.96727 1.69618 1.27664 1.35886 1.18180 0.86670 0.80641 0.80249 0.81926 1.19388 1.20023 1.19211 1.19637 0.90375 0.94624 0.97275 1.20514 1.02092 0.90030 1.03085 0.87996 0.91585 0.91674 0.89215 0.88992 0.90573 0.74784 0.89597 0.89574 0.79247 0.91402 0.90521 0.89622 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.37 -3.30 10.58 -40.96 -0.43 -3.74 16 3 C 0.54 6.18 7.93 34.12 0.27 6.45 16 4 O -0.49 -6.68 14.49 -19.34 -0.28 -6.96 16 5 C -0.06 -0.66 7.02 -82.43 -0.58 -1.24 16 6 N -0.52 -4.64 6.01 -5.63 -0.03 -4.67 16 7 H 0.43 2.43 8.96 -40.82 -0.37 2.06 16 8 C 0.12 1.24 7.20 -81.54 -0.59 0.65 16 9 C -0.10 -0.76 10.24 36.01 0.37 -0.39 16 10 C -0.22 -3.02 5.89 -105.02 -0.62 -3.64 16 11 C 0.59 9.35 6.99 -12.53 -0.09 9.27 16 12 O -0.54 -10.02 17.11 5.27 0.09 -9.93 16 13 N -0.70 -11.22 5.52 -62.57 -0.35 -11.56 16 14 C 0.10 1.78 6.15 -5.19 -0.03 1.75 16 15 C 0.44 9.50 7.85 -10.99 -0.09 9.41 16 16 O -0.58 -14.45 15.24 5.55 0.08 -14.36 16 17 N -0.58 -13.26 5.09 -10.97 -0.06 -13.31 16 18 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 19 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 20 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 21 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 22 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 26 C -0.01 -0.15 6.21 -104.12 -0.65 -0.79 16 27 C -0.10 -1.28 9.63 36.01 0.35 -0.94 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.41 6.75 7.42 -40.82 -0.30 6.45 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 38 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.09 6.41 -51.93 -0.33 0.76 16 41 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -34.87 363.17 -5.28 -40.15 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.00 Total: 14.53 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -0.83 Total: 14.31 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.34 Total: -53.63 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.54 Total: -34.99 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.87 -5.28 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.491 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds