Wall clock time and date at job start Tue Mar 31 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34872 * 117.00186 * 2 1 4 4 O 1.21603 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.46633 * 119.99920 * 180.02562 * 3 2 1 6 6 N 1.37829 * 125.86264 * 0.29625 * 5 3 2 7 7 H 0.97002 * 125.39353 * 0.02562 * 6 5 3 8 8 C 1.34235 * 109.20925 * 180.17651 * 6 5 3 9 9 C 1.50703 * 125.79258 * 179.83831 * 8 6 5 10 10 C 1.38240 * 108.41518 * 359.57235 * 8 6 5 11 11 C 1.47394 * 126.45540 * 180.23909 * 10 8 6 12 12 O 1.21611 * 120.00098 * 90.03002 * 11 10 8 13 13 N 1.34776 * 120.00286 * 270.02483 * 11 10 8 14 14 C 1.46507 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.50691 * 109.46955 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00598 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99812 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99947 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00205 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99946 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00019 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99782 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46991 * 90.00503 * 22 20 18 24 24 H 1.48503 * 109.47140 * 209.99859 * 22 20 18 25 25 H 1.48499 * 109.47453 * 330.00287 * 22 20 18 26 26 C 1.36451 * 125.85756 * 180.02562 * 5 3 2 27 27 C 1.50699 * 126.49546 * 0.02562 * 26 5 3 28 28 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46996 * 300.00064 * 1 2 3 30 30 H 1.09005 * 109.47068 * 59.99704 * 1 2 3 31 31 H 1.09002 * 109.47152 * 269.69165 * 9 8 6 32 32 H 1.09001 * 109.46980 * 149.69265 * 9 8 6 33 33 H 1.09004 * 109.47113 * 29.69246 * 9 8 6 34 34 H 0.97004 * 120.00075 * 0.02562 * 13 11 10 35 35 H 1.08993 * 109.47050 * 300.00874 * 14 13 11 36 36 H 1.09003 * 109.46283 * 60.00543 * 14 13 11 37 37 H 0.97000 * 119.99969 * 359.97438 * 17 15 14 38 38 H 0.97008 * 120.00188 * 179.97438 * 21 20 18 39 39 H 1.09004 * 109.47071 * 269.97855 * 27 26 5 40 40 H 1.08997 * 109.47151 * 29.97587 * 27 26 5 41 41 H 1.08996 * 109.46734 * 149.97864 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5286 1.2784 -0.0006 6 7 4.3934 0.2051 -0.0069 7 1 4.1301 -0.7285 -0.0121 8 6 5.6576 0.6565 -0.0014 9 6 6.8987 -0.1983 -0.0021 10 6 5.6278 2.0386 -0.0012 11 6 6.7942 2.9397 -0.0009 12 8 7.2751 3.3121 -1.0540 13 7 7.3277 3.3512 1.1663 14 6 8.4874 4.2464 1.1666 15 6 8.8855 4.5524 2.5874 16 8 8.2623 4.0698 3.5092 17 7 9.9342 5.3624 2.8338 18 6 10.2967 5.6403 4.1265 19 1 9.7417 5.2106 4.9473 20 6 11.3775 6.4758 4.3806 21 7 11.7247 6.7426 5.6195 22 14 12.3370 7.2197 2.9609 23 1 11.7348 8.5244 2.5863 24 1 13.7489 7.4261 3.3720 25 1 12.2900 6.3000 1.7959 26 6 4.2690 2.4246 -0.0001 27 6 3.7377 3.8348 0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 7.1983 -0.4046 1.0255 32 1 7.7026 0.3287 -0.5161 33 1 6.6929 -1.1373 -0.5161 34 1 6.9443 3.0539 2.0064 35 1 9.3187 3.7642 0.6524 36 1 8.2310 5.1731 0.6531 37 1 10.4329 5.7481 2.0967 38 1 12.4795 7.3256 5.7970 39 1 3.6091 4.1758 -1.0258 40 1 2.7770 3.8605 0.5158 41 1 4.4427 4.4880 0.5157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343513680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:59 Heat of formation + Delta-G solvation = -143.860970 kcal Electronic energy + Delta-G solvation = -26571.545407 eV Core-core repulsion = 22451.246439 eV Total energy + Delta-G solvation = -4120.298968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88963 -41.15919 -40.70567 -39.70990 -37.61085 -36.26050 -35.26087 -34.15425 -33.81376 -32.89610 -29.86810 -29.33608 -28.73829 -27.23961 -26.32468 -23.96084 -22.76333 -21.44801 -21.00508 -20.66688 -20.26019 -19.66094 -18.05920 -17.88826 -17.56957 -17.31467 -16.95910 -16.93915 -16.45196 -16.34093 -15.82178 -15.32561 -15.27159 -14.79409 -14.55966 -14.52729 -14.35984 -14.24418 -14.00963 -13.96611 -13.84717 -13.51645 -13.27300 -13.22221 -13.05828 -12.94864 -12.66035 -12.42526 -11.98413 -11.87642 -11.68409 -11.56189 -11.22811 -10.63786 -10.31744 -10.17126 -9.99593 -9.35521 -8.43573 -6.05414 0.03845 1.06353 1.32724 1.35997 1.38773 1.45685 1.61183 1.81985 1.82931 1.89845 2.21876 2.25593 2.91570 3.12738 3.63413 3.72721 3.77398 3.98239 4.02889 4.24270 4.28837 4.32858 4.41107 4.44593 4.46911 4.61309 4.68408 4.69702 4.71689 4.93176 4.99926 5.08272 5.21640 5.25033 5.40006 5.50588 5.59957 5.90354 6.30136 6.48421 6.51506 6.58793 6.80635 7.13359 7.31952 7.80850 8.72822 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002430 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.451549 B =11518.326785 C =11786.414116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.540 3.460 4 O -0.521 6.521 5 C -0.062 4.062 6 N -0.496 5.496 7 H 0.444 0.556 8 C 0.139 3.861 9 C -0.100 4.100 10 C -0.258 4.258 11 C 0.604 3.396 12 O -0.570 6.570 13 N -0.699 5.699 14 C 0.115 3.885 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.009 4.009 21 N -0.926 5.926 22 Si 0.959 3.041 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.230 1.230 26 C -0.032 4.032 27 C -0.096 4.096 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.413 0.587 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.392 0.608 38 H 0.281 0.719 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.952 -16.811 -16.535 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.387 3.613 4 O -0.411 6.411 5 C -0.171 4.171 6 N -0.093 5.093 7 H 0.286 0.714 8 C 0.014 3.986 9 C -0.157 4.157 10 C -0.267 4.267 11 C 0.390 3.610 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.012 4.012 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.218 5.218 18 C -0.459 4.459 19 H 0.081 0.919 20 C -0.209 4.209 21 N -0.566 5.566 22 Si 0.779 3.221 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.154 1.154 26 C -0.040 4.040 27 C -0.153 4.153 28 H 0.155 0.845 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.253 -16.625 -16.493 28.506 hybrid contribution 0.201 0.453 0.351 0.607 sum -16.052 -16.173 -16.143 27.925 Atomic orbital electron populations 1.23606 0.73711 1.06027 1.02801 1.86524 1.25734 1.31241 1.84347 1.19739 0.86717 0.82102 0.72754 1.90876 1.65798 1.36594 1.47818 1.18468 0.86899 0.87723 1.23979 1.41400 1.04034 1.09438 1.54400 0.71387 1.21085 0.87110 0.92187 0.98209 1.20746 0.90543 0.99173 1.05249 1.19120 0.92465 0.93316 1.21812 1.17458 0.81744 0.79186 0.82599 1.90756 1.63378 1.58552 1.32265 1.45780 1.31397 1.48461 1.09609 1.20961 0.90630 0.96602 0.93006 1.20495 0.82441 0.82366 0.91308 1.90537 1.55932 1.56057 1.47443 1.41927 1.28653 1.43907 1.07346 1.19018 1.14347 1.28916 0.83579 0.91892 1.26075 0.97712 0.96920 1.00224 1.69782 1.28653 1.36959 1.21236 0.85445 0.78192 0.79944 0.78549 1.18254 1.19894 1.15355 1.19746 0.90762 0.95169 0.98348 1.20440 1.01620 0.90287 1.02967 0.84545 0.91852 0.91695 0.88142 0.90077 0.87204 0.74957 0.87141 0.87721 0.77195 0.90971 0.90425 0.89988 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.36 -5.82 10.58 -57.86 -0.61 -6.43 16 3 C 0.54 11.90 7.93 70.01 0.56 12.45 16 4 O -0.52 -14.02 14.49 19.50 0.28 -13.74 16 5 C -0.06 -1.37 7.02 39.98 0.28 -1.09 16 6 N -0.50 -7.72 6.01 -171.72 -1.03 -8.76 16 7 H 0.44 3.62 8.96 -92.71 -0.83 2.79 16 8 C 0.14 2.60 7.20 42.19 0.30 2.90 16 9 C -0.10 -1.23 10.24 71.24 0.73 -0.50 16 10 C -0.26 -6.74 5.89 -20.13 -0.12 -6.86 16 11 C 0.60 18.45 6.99 86.65 0.61 19.06 16 12 O -0.57 -20.37 17.11 -4.07 -0.07 -20.44 16 13 N -0.70 -21.85 5.52 -470.14 -2.60 -24.44 16 14 C 0.12 3.72 6.15 85.63 0.53 4.24 16 15 C 0.45 19.22 7.85 87.65 0.69 19.91 16 16 O -0.61 -31.50 15.24 -3.06 -0.05 -31.54 16 17 N -0.58 -26.28 5.09 -306.99 -1.56 -27.85 16 18 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 19 H 0.06 4.21 7.39 -2.91 -0.02 4.18 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.93 -54.32 13.96 21.66 0.30 -54.02 16 22 Si 0.96 37.84 27.74 68.60 1.90 39.75 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 26 C -0.03 -0.85 6.21 -19.54 -0.12 -0.97 16 27 C -0.10 -2.52 9.63 71.24 0.69 -1.83 16 28 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16 33 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.41 13.41 7.42 -92.71 -0.69 12.72 16 35 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16 38 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.08 2.17 6.41 -2.39 -0.02 2.15 16 41 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 Total: -1.00 -79.88 363.17 2.23 -77.65 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.99 Total: 38.78 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 6.66 Total: 31.05 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.89 Total: -115.06 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -0.45 Total: -72.16 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.75 kcal Total: -79.88 2.23 -77.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.215 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds