Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47233 * 269.99550 * 3 2 1 5 5 H 1.48501 * 109.47281 * 29.99695 * 3 2 1 6 6 H 1.48503 * 109.47332 * 149.99770 * 3 2 1 7 7 C 1.37876 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99805 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00189 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47468 * 54.99879 * 11 10 9 13 13 N 1.46904 * 109.47092 * 294.99749 * 11 10 9 14 14 C 1.50703 * 109.47098 * 175.00031 * 11 10 9 15 15 O 1.21281 * 120.00069 * 100.00005 * 14 11 10 16 16 N 1.34779 * 119.99728 * 279.99850 * 14 11 10 17 17 C 1.46496 * 119.99507 * 179.72612 * 16 14 11 18 18 C 1.50703 * 109.47127 * 180.27227 * 17 16 14 19 19 O 1.21294 * 119.99698 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00467 * 179.97438 * 18 17 16 21 21 C 1.40033 * 120.00382 * 175.38076 * 20 18 17 22 22 C 1.38848 * 120.04316 * 214.81070 * 21 20 18 23 23 C 1.38119 * 119.95188 * 179.76754 * 22 21 20 24 24 C 1.38474 * 120.04295 * 0.50720 * 23 22 21 25 25 F 1.35101 * 119.95417 * 179.72650 * 24 23 22 26 26 C 1.38470 * 120.09084 * 359.74244 * 24 23 22 27 27 C 1.38109 * 120.04814 * 0.02562 * 26 24 23 28 28 H 0.97009 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46982 * 59.99513 * 9 7 2 30 30 H 1.09000 * 109.46838 * 300.00134 * 9 7 2 31 31 H 1.09003 * 109.46982 * 59.99683 * 10 9 7 32 32 H 1.09005 * 109.47022 * 299.99656 * 10 9 7 33 33 H 1.00894 * 110.99995 * 299.99965 * 13 11 10 34 34 H 1.00906 * 110.99441 * 63.95407 * 13 11 10 35 35 H 0.96999 * 120.00105 * 359.97438 * 16 14 11 36 36 H 1.08991 * 109.47515 * 300.27220 * 17 16 14 37 37 H 1.09006 * 109.47234 * 60.27804 * 17 16 14 38 38 H 0.97003 * 119.99626 * 355.37378 * 20 18 17 39 39 H 1.08001 * 120.02632 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.97629 * 180.22820 * 23 22 21 41 41 H 1.08005 * 119.97668 * 179.97438 * 26 24 23 42 42 H 1.08006 * 120.02983 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5514 -2.6367 0.0022 12 1 5.9148 -2.0466 0.8435 13 7 6.0411 -2.0525 -1.2536 14 6 6.0537 -4.0520 0.1272 15 8 6.4277 -4.6520 -0.8582 16 7 6.0872 -4.6511 1.3341 17 6 6.5699 -6.0290 1.4547 18 6 6.4998 -6.4615 2.8966 19 8 6.0867 -5.6942 3.7404 20 7 6.8949 -7.7009 3.2484 21 6 6.9214 -8.0706 4.5988 22 6 7.9061 -8.9316 5.0647 23 6 7.9333 -9.2911 6.3980 24 6 6.9732 -8.8018 7.2677 25 9 6.9983 -9.1590 8.5704 26 6 5.9874 -7.9471 6.8040 27 6 5.9594 -7.5814 5.4725 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6805 -0.8888 31 1 3.6583 -3.1511 -0.8875 32 1 3.6577 -3.1498 0.8925 33 1 5.7175 -2.5820 -2.0491 34 1 5.7716 -1.0831 -1.3306 35 1 5.7885 -4.1711 2.1223 36 1 5.9477 -6.6864 0.8475 37 1 7.6021 -6.0840 1.1087 38 1 7.1609 -8.3371 2.5661 39 1 8.6526 -9.3166 4.3859 40 1 8.7012 -9.9578 6.7615 41 1 5.2392 -7.5669 7.4838 42 1 5.1901 -6.9151 5.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424117841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -121.279890 kcal Electronic energy + Delta-G solvation = -25735.514095 eV Core-core repulsion = 21628.567106 eV Total energy + Delta-G solvation = -4106.946989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.88795 -41.85447 -40.82185 -39.41330 -37.17822 -35.93061 -35.54225 -34.80934 -32.17068 -32.07600 -31.04221 -29.23971 -27.77821 -25.28955 -24.36410 -23.49316 -22.21081 -21.72074 -21.24254 -19.45694 -19.03094 -18.60838 -18.52876 -17.78328 -17.21862 -17.19036 -16.72884 -16.57509 -16.30408 -15.98629 -15.81156 -15.65099 -15.32242 -14.87856 -14.74523 -14.58051 -14.53600 -14.29439 -14.18413 -13.96280 -13.73500 -13.56708 -13.38510 -13.04488 -12.66297 -12.22503 -12.09064 -11.91770 -11.66370 -11.45482 -11.40906 -11.10381 -10.87288 -10.77006 -10.25314 -10.13466 -9.66009 -9.16194 -8.30117 -6.35519 -0.02286 0.20988 1.29962 1.38012 1.40125 1.51325 1.54849 1.57486 2.27728 2.36149 2.57834 3.05515 3.28970 3.38620 3.73493 3.74969 3.79249 3.87789 4.09063 4.19247 4.21914 4.26665 4.30892 4.32613 4.49198 4.58615 4.73143 4.92002 4.95026 5.10705 5.15434 5.18286 5.25063 5.28967 5.36441 5.47147 5.62599 5.87268 6.05910 6.21420 6.24855 6.41587 6.50982 6.73011 6.89569 7.13371 7.29222 8.86645 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002197 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.568508 B =12742.220879 C =14051.685978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.534 4.534 8 H 0.026 0.974 9 C -0.007 4.007 10 C -0.119 4.119 11 C 0.080 3.920 12 H 0.116 0.884 13 N -0.828 5.828 14 C 0.533 3.467 15 O -0.561 6.561 16 N -0.718 5.718 17 C 0.104 3.896 18 C 0.515 3.485 19 O -0.547 6.547 20 N -0.651 5.651 21 C 0.125 3.875 22 C -0.102 4.102 23 C -0.131 4.131 24 C 0.065 3.935 25 F -0.149 7.149 26 C -0.145 4.145 27 C -0.111 4.111 28 H 0.266 0.734 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.347 0.653 34 H 0.355 0.645 35 H 0.415 0.585 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.435 0.565 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.129 -19.997 9.967 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.159 4.159 11 C -0.035 4.035 12 H 0.134 0.866 13 N -0.360 5.360 14 C 0.320 3.680 15 O -0.439 6.439 16 N -0.374 5.374 17 C -0.023 4.023 18 C 0.303 3.697 19 O -0.424 6.424 20 N -0.299 5.299 21 C 0.031 3.969 22 C -0.122 4.122 23 C -0.150 4.150 24 C 0.045 3.955 25 F -0.128 7.128 26 C -0.164 4.164 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.253 0.747 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.275 0.725 39 H 0.191 0.809 40 H 0.182 0.818 41 H 0.159 0.841 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.719 -19.935 10.125 31.171 hybrid contribution -1.784 0.773 0.219 1.957 sum 19.935 -19.161 10.345 29.523 Atomic orbital electron populations 1.70086 1.08532 1.28214 1.52526 1.26100 0.95656 1.03840 0.94020 0.85598 0.79691 0.77696 0.79292 1.19042 1.21506 1.16114 1.21447 0.92234 0.92898 1.50638 0.95532 1.19509 0.93799 0.93925 0.97215 1.22027 0.93535 0.98726 1.01630 1.21410 0.93275 0.92437 0.96423 0.86648 1.58757 1.66381 1.07709 1.03156 1.20597 0.76545 0.88536 0.82367 1.90639 1.48857 1.66488 1.37952 1.45688 1.66636 1.14665 1.10389 1.21162 1.04199 0.84772 0.92144 1.20867 0.76154 0.81563 0.91106 1.90749 1.45360 1.53738 1.52581 1.43179 1.66094 1.13977 1.06622 1.17916 0.95691 0.98849 0.84428 1.21098 0.97162 0.98332 0.95562 1.21269 0.99093 1.01725 0.92899 1.17969 0.98882 0.99952 0.78648 1.91480 1.96343 1.90645 1.34341 1.21185 0.99616 0.98941 0.96657 1.21174 0.98676 1.00359 0.92879 0.92542 0.95287 0.95545 0.93454 0.92102 0.83979 0.82980 0.74691 0.86638 0.85932 0.72456 0.80866 0.81811 0.84110 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.95 42.87 27.47 68.60 1.88 44.76 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.53 -30.13 9.66 25.60 0.25 -29.88 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 9 C -0.01 -0.30 3.81 29.85 0.11 -0.19 16 10 C -0.12 -4.34 4.78 30.59 0.15 -4.19 16 11 C 0.08 2.35 3.21 44.17 0.14 2.49 16 12 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 13 N -0.83 -24.05 8.94 -171.79 -1.54 -25.59 16 14 C 0.53 15.13 7.08 87.66 0.62 15.75 16 15 O -0.56 -18.54 16.25 -3.03 -0.05 -18.59 16 16 N -0.72 -16.19 5.53 -466.79 -2.58 -18.77 16 17 C 0.10 1.61 6.16 85.63 0.53 2.14 16 18 C 0.52 8.38 7.74 87.66 0.68 9.06 16 19 O -0.55 -13.26 13.10 -3.07 -0.04 -13.30 16 20 N -0.65 -6.61 5.34 -303.45 -1.62 -8.23 16 21 C 0.13 1.72 6.30 38.12 0.24 1.96 16 22 C -0.10 -0.89 9.96 22.39 0.22 -0.67 16 23 C -0.13 -1.42 10.02 22.30 0.22 -1.20 16 24 C 0.07 1.06 7.30 22.38 0.16 1.23 16 25 F -0.15 -2.76 17.27 44.97 0.78 -1.98 16 26 C -0.14 -2.55 10.02 22.29 0.22 -2.33 16 27 C -0.11 -2.06 8.70 22.39 0.19 -1.86 16 28 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 30 H 0.03 1.08 6.30 -2.39 -0.02 1.06 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.35 10.38 8.58 -89.70 -0.77 9.61 16 34 H 0.35 9.80 7.55 -89.69 -0.68 9.12 16 35 H 0.41 9.48 7.44 -92.71 -0.69 8.79 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.44 0.95 8.82 -92.71 -0.82 0.13 16 39 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.13 2.94 6.22 -2.91 -0.02 2.92 16 Total: -1.00 -76.96 362.09 -0.56 -77.52 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.90 Total: 30.72 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.21 Total: -7.22 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -5.44 Total: -111.91 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.09 Total: -31.89 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.76 kcal Total: -76.96 -0.56 -77.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424117841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.757 kcal (2) G-P(sol) polarization free energy of solvation -76.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds