Wall clock time and date at job start Tue Mar 31 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21304 * 119.99844 * 2 1 4 4 N 1.34776 * 120.00161 * 179.97438 * 2 1 3 5 5 C 1.40430 * 119.99945 * 180.02562 * 4 2 1 6 6 C 1.34985 * 126.86731 * 0.17899 * 5 4 2 7 7 N 1.36788 * 108.96000 * 180.28818 * 6 5 4 8 8 H 0.96998 * 124.78595 * 179.74389 * 7 6 5 9 9 C 1.34547 * 110.42711 * 359.70949 * 7 6 5 10 10 C 1.50700 * 125.81826 * 179.97438 * 9 7 6 11 11 C 1.37919 * 108.35546 * 359.97438 * 9 7 6 12 12 C 1.46977 * 127.00635 * 179.97438 * 11 9 7 13 13 O 1.21563 * 120.00014 * 90.02676 * 12 11 9 14 14 O 1.34799 * 120.00067 * 269.74906 * 12 11 9 15 15 C 1.45196 * 117.00237 * 180.27096 * 14 12 11 16 16 C 1.50701 * 109.47193 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00011 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99567 * 180.02562 * 16 15 14 19 19 C 1.46507 * 119.99591 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.46913 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00085 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00005 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99984 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47085 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46994 * 120.00236 * 24 22 20 27 27 H 1.48502 * 109.46597 * 240.00170 * 24 22 20 28 28 H 1.09003 * 109.46746 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47336 * 299.99988 * 1 2 3 30 30 H 1.08996 * 109.46897 * 60.00485 * 1 2 3 31 31 H 0.97003 * 120.00252 * 0.02562 * 4 2 1 32 32 H 1.08008 * 125.52168 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47070 * 270.03936 * 10 9 7 34 34 H 1.08997 * 109.47643 * 30.03838 * 10 9 7 35 35 H 1.09003 * 109.47197 * 150.04400 * 10 9 7 36 36 H 1.08998 * 109.47461 * 300.00589 * 15 14 12 37 37 H 1.09010 * 109.46796 * 60.00378 * 15 14 12 38 38 H 0.97001 * 120.00828 * 0.02562 * 18 16 15 39 39 H 1.09006 * 109.47014 * 300.00015 * 19 18 16 40 40 H 1.08996 * 109.47066 * 60.00230 * 19 18 16 41 41 H 0.97002 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5852 -1.1671 0.0011 6 6 4.3951 -0.0872 0.0045 7 7 5.6967 -0.5077 -0.0027 8 1 6.4682 0.0802 -0.0056 9 6 5.7559 -1.8519 -0.0045 10 6 7.0155 -2.6791 -0.0125 11 6 4.4673 -2.3434 0.0023 12 6 4.0590 -3.7553 0.0025 13 8 3.8958 -4.3406 1.0554 14 8 3.8601 -4.3996 -1.1647 15 6 3.4522 -5.7910 -1.0884 16 6 3.2798 -6.3410 -2.4809 17 8 3.4813 -5.6305 -3.4427 18 7 2.9016 -7.6226 -2.6571 19 6 2.7345 -8.1574 -4.0108 20 6 2.3099 -9.6012 -3.9315 21 1 2.1780 -10.0732 -2.9691 22 6 2.0896 -10.3194 -5.0877 23 7 2.2496 -9.7444 -6.2595 24 14 1.5625 -12.1088 -4.9894 25 1 1.4536 -12.5153 -3.5654 26 1 0.2448 -12.2739 -5.6541 27 1 2.5707 -12.9599 -5.6709 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6960 -2.0073 0.0005 32 1 4.0682 0.9423 0.0070 33 1 7.3138 -2.8769 -1.0421 34 1 7.8105 -2.1356 0.4980 35 1 6.8334 -3.6234 0.5007 36 1 4.2155 -6.3652 -0.5633 37 1 2.5077 -5.8637 -0.5491 38 1 2.7401 -8.1909 -1.8877 39 1 1.9719 -7.5831 -4.5368 40 1 3.6795 -8.0853 -4.5491 41 1 2.0950 -10.2498 -7.0729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763749307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:42 Heat of formation + Delta-G solvation = -116.640390 kcal Electronic energy + Delta-G solvation = -26295.946496 eV Core-core repulsion = 22176.827901 eV Total energy + Delta-G solvation = -4119.118595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69400 -40.17692 -39.64988 -38.62314 -36.20545 -35.08258 -34.25036 -32.42251 -31.95351 -31.34206 -29.64896 -28.98285 -26.87453 -26.22680 -23.52750 -22.45163 -22.38255 -20.20253 -19.94221 -19.67301 -18.57578 -17.47689 -17.25231 -16.69898 -16.35530 -16.04006 -15.94835 -15.75478 -15.34680 -15.05794 -14.81403 -14.54683 -14.20941 -14.08959 -13.43567 -13.22539 -13.05221 -12.96174 -12.94971 -12.81677 -12.55950 -12.44701 -12.16233 -12.01116 -11.75423 -11.14323 -11.00194 -10.95353 -10.74484 -10.67103 -10.35765 -10.17056 -9.43397 -9.18800 -8.79806 -8.65705 -7.99522 -7.98392 -6.20929 -4.28243 1.67813 1.86037 2.00620 2.49116 2.64037 2.87194 3.17843 3.19002 3.21378 3.28810 3.31759 4.03695 4.32699 4.37698 4.44783 4.74499 4.80991 4.88962 5.05303 5.06893 5.15322 5.16072 5.22896 5.23805 5.34146 5.43367 5.46571 5.54638 5.60848 5.77992 6.31141 6.48944 6.62867 7.10751 7.21912 7.24510 7.30418 7.44811 7.58775 7.71707 7.81913 7.90831 8.49482 8.70584 8.96205 9.38280 10.89249 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002388 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.317541 B =11720.185437 C =12617.508168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.512 3.488 3 O -0.538 6.538 4 N -0.641 5.641 5 C 0.099 3.901 6 C -0.024 4.024 7 N -0.540 5.540 8 H 0.423 0.577 9 C 0.103 3.897 10 C -0.097 4.097 11 C -0.223 4.223 12 C 0.545 3.455 13 O -0.502 6.502 14 O -0.320 6.320 15 C 0.045 3.955 16 C 0.499 3.501 17 O -0.532 6.532 18 N -0.707 5.707 19 C 0.251 3.749 20 C -0.544 4.544 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.413 0.587 32 H 0.197 0.803 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 18.222 16.002 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.301 3.699 3 O -0.415 6.415 4 N -0.284 5.284 5 C -0.001 4.001 6 C -0.153 4.153 7 N -0.137 5.137 8 H 0.260 0.740 9 C -0.016 4.016 10 C -0.154 4.154 11 C -0.234 4.234 12 C 0.388 3.612 13 O -0.390 6.390 14 O -0.235 6.235 15 C -0.033 4.033 16 C 0.282 3.718 17 O -0.410 6.410 18 N -0.357 5.357 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.249 0.751 32 H 0.214 0.786 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.226 0.774 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.110 19.350 15.365 25.048 hybrid contribution -0.432 -1.683 0.372 1.777 sum 3.678 17.667 15.737 23.944 Atomic orbital electron populations 1.21827 0.90326 1.04870 1.05731 1.20959 0.90914 0.82642 0.75368 1.90580 1.70139 1.31343 1.49478 1.43091 1.03679 1.10007 1.71614 1.17655 0.82449 0.91648 1.08304 1.22072 0.80967 0.99625 1.12654 1.41356 1.08474 1.05705 1.58183 0.73967 1.20235 0.94769 0.83656 1.02894 1.20527 0.91831 0.99000 1.04063 1.18877 0.92288 0.88455 1.23765 1.20278 0.73147 0.86258 0.81560 1.90860 1.47183 1.68114 1.32852 1.86791 1.78061 1.25268 1.33383 1.22902 1.02434 0.80050 0.97872 1.19890 0.79201 0.83358 0.89356 1.90717 1.50319 1.58164 1.41764 1.46366 1.67106 1.09963 1.12291 1.19176 0.97576 0.93411 0.76760 1.21246 1.48329 0.95420 0.93262 0.91711 1.24957 0.95014 0.99000 0.95047 1.69983 1.47762 1.36923 0.97517 0.86342 0.78312 0.83878 0.78272 1.19596 1.20767 1.20774 0.90139 0.88273 0.88126 0.75122 0.78628 0.89424 0.90597 0.89731 0.88475 0.88549 0.77436 0.95274 0.95271 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.39 36.01 0.37 -0.62 16 2 C 0.51 5.20 7.91 -10.98 -0.09 5.12 16 3 O -0.54 -6.96 14.32 5.54 0.08 -6.88 16 4 N -0.64 -6.91 5.46 -8.51 -0.05 -6.96 16 5 C 0.10 1.25 7.22 -81.51 -0.59 0.66 16 6 C -0.02 -0.26 10.79 -16.50 -0.18 -0.44 16 7 N -0.54 -4.60 5.90 -8.67 -0.05 -4.65 16 8 H 0.42 1.98 8.96 -40.82 -0.37 1.61 16 9 C 0.10 1.08 7.21 -81.52 -0.59 0.49 16 10 C -0.10 -0.75 10.25 36.01 0.37 -0.38 16 11 C -0.22 -2.96 6.21 -102.91 -0.64 -3.60 16 12 C 0.55 8.03 7.46 34.27 0.26 8.28 16 13 O -0.50 -7.97 16.90 -19.31 -0.33 -8.29 16 14 O -0.32 -5.22 9.77 -47.45 -0.46 -5.69 16 15 C 0.05 0.68 5.96 36.01 0.21 0.89 16 16 C 0.50 9.88 7.91 -10.99 -0.09 9.79 16 17 O -0.53 -12.98 16.50 -14.10 -0.23 -13.21 16 18 N -0.71 -14.36 5.55 -61.47 -0.34 -14.70 16 19 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 20 C -0.54 -14.41 9.28 -34.44 -0.32 -14.73 16 21 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.65 13.29 55.43 0.74 -24.92 16 24 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.08 0.34 7.91 -51.93 -0.41 -0.07 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 3.81 8.66 -40.82 -0.35 3.46 16 32 H 0.20 2.14 5.86 -52.48 -0.31 1.83 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.72 7.95 -51.93 -0.41 0.31 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -37.22 368.71 -6.61 -43.83 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.11 Total: 6.88 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.40 Total: 13.57 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.30 Total: -51.23 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.94 Total: -34.07 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.22 -6.61 -43.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763749307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.809 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds