Wall clock time and date at job start Tue Mar 31 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21304 * 119.99844 * 2 1 4 4 N 1.34776 * 120.00161 * 179.97438 * 2 1 3 5 5 C 1.40430 * 119.99945 * 180.02562 * 4 2 1 6 6 C 1.34985 * 126.86731 * 0.17899 * 5 4 2 7 7 N 1.36788 * 108.96000 * 180.28818 * 6 5 4 8 8 H 0.96998 * 124.78595 * 179.74389 * 7 6 5 9 9 C 1.34547 * 110.42711 * 359.70949 * 7 6 5 10 10 C 1.50700 * 125.81826 * 179.97438 * 9 7 6 11 11 C 1.37919 * 108.35546 * 359.97438 * 9 7 6 12 12 C 1.46977 * 127.00635 * 179.97438 * 11 9 7 13 13 O 1.21563 * 120.00014 * 90.02676 * 12 11 9 14 14 O 1.34799 * 120.00067 * 269.74906 * 12 11 9 15 15 C 1.45196 * 117.00237 * 180.27096 * 14 12 11 16 16 C 1.50701 * 109.47193 * 180.02562 * 15 14 12 17 17 O 1.21275 * 120.00011 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99567 * 180.02562 * 16 15 14 19 19 C 1.46507 * 119.99591 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.46913 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00085 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00005 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99984 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47085 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46994 * 120.00236 * 24 22 20 27 27 H 1.48502 * 109.46597 * 240.00170 * 24 22 20 28 28 H 1.09003 * 109.46746 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47336 * 299.99988 * 1 2 3 30 30 H 1.08996 * 109.46897 * 60.00485 * 1 2 3 31 31 H 0.97003 * 120.00252 * 0.02562 * 4 2 1 32 32 H 1.08008 * 125.52168 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47070 * 270.03936 * 10 9 7 34 34 H 1.08997 * 109.47643 * 30.03838 * 10 9 7 35 35 H 1.09003 * 109.47197 * 150.04400 * 10 9 7 36 36 H 1.08998 * 109.47461 * 300.00589 * 15 14 12 37 37 H 1.09010 * 109.46796 * 60.00378 * 15 14 12 38 38 H 0.97001 * 120.00828 * 0.02562 * 18 16 15 39 39 H 1.09006 * 109.47014 * 300.00015 * 19 18 16 40 40 H 1.08996 * 109.47066 * 60.00230 * 19 18 16 41 41 H 0.97002 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5852 -1.1671 0.0011 6 6 4.3951 -0.0872 0.0045 7 7 5.6967 -0.5077 -0.0027 8 1 6.4682 0.0802 -0.0056 9 6 5.7559 -1.8519 -0.0045 10 6 7.0155 -2.6791 -0.0125 11 6 4.4673 -2.3434 0.0023 12 6 4.0590 -3.7553 0.0025 13 8 3.8958 -4.3406 1.0554 14 8 3.8601 -4.3996 -1.1647 15 6 3.4522 -5.7910 -1.0884 16 6 3.2798 -6.3410 -2.4809 17 8 3.4813 -5.6305 -3.4427 18 7 2.9016 -7.6226 -2.6571 19 6 2.7345 -8.1574 -4.0108 20 6 2.3099 -9.6012 -3.9315 21 1 2.1780 -10.0732 -2.9691 22 6 2.0896 -10.3194 -5.0877 23 7 2.2496 -9.7444 -6.2595 24 14 1.5625 -12.1088 -4.9894 25 1 1.4536 -12.5153 -3.5654 26 1 0.2448 -12.2739 -5.6541 27 1 2.5707 -12.9599 -5.6709 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6960 -2.0073 0.0005 32 1 4.0682 0.9423 0.0070 33 1 7.3138 -2.8769 -1.0421 34 1 7.8105 -2.1356 0.4980 35 1 6.8334 -3.6234 0.5007 36 1 4.2155 -6.3652 -0.5633 37 1 2.5077 -5.8637 -0.5491 38 1 2.7401 -8.1909 -1.8877 39 1 1.9719 -7.5831 -4.5368 40 1 3.6795 -8.0853 -4.5491 41 1 2.0950 -10.2498 -7.0729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763749307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:42 Heat of formation + Delta-G solvation = -144.697838 kcal Electronic energy + Delta-G solvation = -26297.163158 eV Core-core repulsion = 22176.827901 eV Total energy + Delta-G solvation = -4120.335257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54743 -41.38300 -40.49872 -40.21472 -37.44640 -36.16639 -35.92416 -34.40499 -32.71637 -32.11875 -30.82765 -30.02471 -28.52907 -27.14619 -24.91475 -24.03796 -23.18989 -21.63238 -21.13972 -20.62692 -19.43978 -19.11161 -18.47728 -17.81316 -17.61209 -17.24324 -16.99202 -16.83866 -16.64413 -16.51741 -16.06976 -15.81749 -15.55832 -14.95210 -14.69640 -14.48922 -14.20182 -14.02412 -13.84126 -13.69585 -13.62012 -13.53078 -13.41456 -13.10975 -12.90105 -12.88719 -12.75046 -12.21372 -11.98638 -11.89977 -11.89404 -11.45703 -10.99426 -10.90252 -10.82141 -9.91523 -9.53927 -8.82133 -8.28751 -6.45044 0.76307 0.89701 1.04779 1.41554 1.45873 1.46872 1.57325 1.59786 1.88989 2.00021 2.32183 2.41657 2.67720 3.06790 3.66497 3.68052 3.73866 3.85986 4.06514 4.08123 4.14066 4.26175 4.43507 4.64147 4.65683 4.67281 4.80244 4.81974 5.04876 5.06679 5.10300 5.21044 5.23295 5.43565 5.64453 5.65122 5.79049 5.83358 6.37030 6.55004 6.56890 6.64655 6.80419 7.04445 7.22030 7.37775 8.83601 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002388 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.317541 B =11720.185437 C =12617.508168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.505 3.495 3 O -0.571 6.571 4 N -0.642 5.642 5 C 0.076 3.924 6 C -0.027 4.027 7 N -0.521 5.521 8 H 0.441 0.559 9 C 0.115 3.885 10 C -0.097 4.097 11 C -0.267 4.267 12 C 0.556 3.444 13 O -0.516 6.516 14 O -0.341 6.341 15 C 0.056 3.944 16 C 0.500 3.500 17 O -0.584 6.584 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.554 4.554 21 H 0.087 0.913 22 C 0.004 3.996 23 N -0.931 5.931 24 Si 0.984 3.016 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.197 0.803 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.413 0.587 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 17.448 18.059 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.286 5.286 5 C -0.024 4.024 6 C -0.158 4.158 7 N -0.120 5.120 8 H 0.283 0.717 9 C -0.005 4.005 10 C -0.154 4.154 11 C -0.277 4.277 12 C 0.400 3.600 13 O -0.405 6.405 14 O -0.256 6.256 15 C -0.021 4.021 16 C 0.286 3.714 17 O -0.464 6.464 18 N -0.349 5.349 19 C 0.144 3.856 20 C -0.592 4.592 21 H 0.105 0.895 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.808 3.192 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.255 0.745 32 H 0.213 0.787 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.249 0.751 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.130 18.581 17.486 25.847 hybrid contribution -0.382 -1.347 -0.273 1.427 sum 3.747 17.234 17.213 24.645 Atomic orbital electron populations 1.21886 0.86941 1.06472 1.06728 1.21765 0.92497 0.81886 0.74226 1.90554 1.71150 1.32332 1.51026 1.43230 1.03303 1.10596 1.71434 1.18021 0.83464 0.91940 1.08968 1.22096 0.81765 0.99318 1.12578 1.41334 1.08505 1.05453 1.56670 0.71693 1.20649 0.94895 0.84349 1.00652 1.20648 0.91434 0.98645 1.04681 1.19053 0.93792 0.87856 1.26992 1.20411 0.72321 0.86521 0.80738 1.90838 1.47985 1.68601 1.33042 1.86789 1.78428 1.25720 1.34666 1.22825 1.05040 0.80088 0.94139 1.20678 0.77273 0.82480 0.90978 1.90695 1.52275 1.59338 1.44134 1.46029 1.67182 1.10774 1.10941 1.18628 0.94442 0.93589 0.78943 1.21641 1.47806 0.95446 0.94318 0.89524 1.26048 0.94800 1.04203 0.94515 1.70138 1.49061 1.39174 0.98550 0.85115 0.77581 0.77360 0.79188 1.17552 1.20555 1.20586 0.88280 0.86838 0.87340 0.74547 0.78670 0.88999 0.87294 0.90475 0.85582 0.85491 0.75065 0.99000 0.99017 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.39 71.24 0.74 -0.95 16 2 C 0.51 10.14 7.91 87.66 0.69 10.83 16 3 O -0.57 -14.89 14.32 -3.10 -0.04 -14.93 16 4 N -0.64 -13.83 5.46 -299.22 -1.63 -15.46 16 5 C 0.08 1.91 7.22 39.32 0.28 2.20 16 6 C -0.03 -0.59 10.79 83.17 0.90 0.31 16 7 N -0.52 -8.17 5.90 -181.35 -1.07 -9.24 16 8 H 0.44 3.23 8.96 -92.71 -0.83 2.40 16 9 C 0.12 2.26 7.21 42.07 0.30 2.56 16 10 C -0.10 -1.30 10.25 71.24 0.73 -0.57 16 11 C -0.27 -6.94 6.21 -18.76 -0.12 -7.06 16 12 C 0.56 15.97 7.46 70.11 0.52 16.50 16 13 O -0.52 -15.72 16.90 19.63 0.33 -15.38 16 14 O -0.34 -10.90 9.77 -50.71 -0.50 -11.40 16 15 C 0.06 1.59 5.96 71.24 0.42 2.01 16 16 C 0.50 19.80 7.91 87.66 0.69 20.50 16 17 O -0.58 -29.40 16.50 15.79 0.26 -29.14 16 18 N -0.70 -28.23 5.55 -466.78 -2.59 -30.82 16 19 C 0.27 14.21 5.43 85.63 0.46 14.68 16 20 C -0.55 -29.25 9.28 25.60 0.24 -29.01 16 21 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 22 C 0.00 0.22 5.46 84.66 0.46 0.68 16 23 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 24 Si 0.98 41.42 29.54 68.60 2.03 43.45 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 28 H 0.10 0.66 7.91 -2.39 -0.02 0.64 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.42 7.66 8.66 -92.71 -0.80 6.85 16 32 H 0.20 4.29 5.86 -2.91 -0.02 4.27 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.19 7.95 -2.39 -0.02 1.17 16 36 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.41 13.29 8.32 -92.71 -0.77 12.52 16 39 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -83.68 368.71 2.12 -81.57 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -1.29 Total: 23.60 kcal Atomic # 6 Polarization: 26.34 SS G_CDS: 6.34 Total: 32.68 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -5.01 Total: -110.44 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: 0.05 Total: -70.85 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -83.68 2.12 -81.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763749307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.133 kcal (2) G-P(sol) polarization free energy of solvation -83.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds