Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99835 * 2 1 4 4 C 1.38797 * 120.02778 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05380 * 179.70339 * 4 3 2 6 6 C 1.38201 * 120.10530 * 0.54673 * 5 4 3 7 7 C 1.50703 * 119.96946 * 179.72506 * 6 5 4 8 8 N 1.46505 * 109.47064 * 259.72665 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46708 * 180.02562 * 12 11 9 14 14 O 1.21296 * 120.00297 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99970 * 180.02562 * 15 13 12 17 17 H 1.08003 * 120.00507 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99811 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99639 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46583 * 90.00286 * 20 18 16 22 22 H 1.48496 * 109.47105 * 210.00444 * 20 18 16 23 23 H 1.48496 * 109.47061 * 330.00873 * 20 18 16 24 24 C 1.38753 * 120.05779 * 359.45460 * 6 5 4 25 25 O 1.35893 * 120.02899 * 180.29336 * 24 6 5 26 26 C 1.38607 * 120.02617 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47036 * 60.00322 * 1 2 3 28 28 H 1.09003 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47137 * 299.99924 * 1 2 3 30 30 H 1.08001 * 119.97261 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.94422 * 180.29611 * 5 4 3 32 32 H 1.09002 * 109.47152 * 139.72748 * 7 6 5 33 33 H 1.09001 * 109.46980 * 19.72848 * 7 6 5 34 34 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 35 35 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 37 37 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 38 38 H 0.97000 * 120.00091 * 359.97438 * 15 13 12 39 39 H 0.97003 * 119.99526 * 179.97438 * 19 18 16 40 40 H 0.96705 * 113.99832 * 89.99632 * 25 24 6 41 41 H 1.08001 * 120.05686 * 0.04775 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0067 6 6 3.2971 3.6821 0.0010 7 6 3.9774 5.0269 0.0015 8 7 4.4118 5.3549 -1.3587 9 6 5.0476 6.5183 -1.6008 10 8 5.2612 7.2954 -0.6904 11 7 5.4468 6.8202 -2.8522 12 6 6.1385 8.0846 -3.1153 13 6 6.4737 8.1781 -4.5815 14 8 6.1657 7.2770 -5.3328 15 7 7.1168 9.2625 -5.0580 16 6 7.4213 9.3478 -6.3920 17 1 7.1463 8.5458 -7.0611 18 6 8.0838 10.4660 -6.8833 19 7 8.3761 10.5475 -8.1619 20 14 8.5589 11.8535 -5.7263 21 1 9.9153 11.5982 -5.1782 22 1 8.5590 13.1393 -6.4691 23 1 7.5803 11.9256 -4.6118 24 6 4.0567 2.5210 0.0004 25 8 5.4136 2.5960 0.0008 26 6 3.4301 1.2841 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2120 2.3187 0.0014 31 1 1.3277 4.5114 0.0120 32 1 4.8439 4.9954 0.6620 33 1 3.2797 5.7868 0.3534 34 1 4.2411 4.7351 -2.0850 35 1 5.2762 6.2004 -3.5786 36 1 5.4923 8.9170 -2.8369 37 1 7.0565 8.1255 -2.5290 38 1 7.3635 9.9830 -4.4572 39 1 8.8383 11.3283 -8.5050 40 1 5.8061 2.6172 0.8844 41 1 4.0197 0.3792 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807552164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -142.678509 kcal Electronic energy + Delta-G solvation = -25799.139079 eV Core-core repulsion = 21678.891386 eV Total energy + Delta-G solvation = -4120.247693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54948 -41.05969 -40.14077 -39.50650 -37.16691 -36.29455 -35.69171 -35.25019 -33.82206 -32.12885 -30.95892 -29.34266 -28.31737 -26.67374 -25.63479 -23.74240 -22.36617 -21.89790 -21.45235 -20.57079 -19.87178 -19.51458 -17.96575 -17.74656 -17.56080 -17.43673 -16.85601 -16.73519 -16.64995 -16.23048 -15.85740 -15.79727 -15.60567 -15.23913 -14.90674 -14.88882 -14.55891 -14.30390 -14.01088 -13.96428 -13.45434 -13.34955 -13.15238 -12.95292 -12.84635 -12.43525 -12.23551 -11.98930 -11.92248 -11.56977 -11.54739 -11.41352 -10.64160 -10.40208 -10.30627 -9.83966 -9.78166 -9.24136 -8.44557 -6.06516 0.13021 0.23948 1.32419 1.35418 1.45161 1.69148 1.80401 2.15557 2.21765 2.23421 2.56420 2.85013 3.11755 3.32026 3.42533 3.69177 3.75618 3.99364 4.01847 4.22390 4.36711 4.40885 4.41628 4.44265 4.47408 4.65270 4.73659 4.76863 4.92945 5.08815 5.28049 5.31747 5.43456 5.49272 5.51891 5.56281 5.89273 5.96076 6.34694 6.50170 6.79163 6.79276 7.02378 7.29697 7.54684 7.79834 8.71910 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.001968 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.445137 B =14223.169664 C =14564.738636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.144 3.856 4 C -0.219 4.219 5 C -0.040 4.040 6 C -0.179 4.179 7 C 0.197 3.803 8 N -0.727 5.727 9 C 0.708 3.292 10 O -0.629 6.629 11 N -0.729 5.729 12 C 0.139 3.861 13 C 0.445 3.555 14 O -0.615 6.615 15 N -0.577 5.577 16 C -0.331 4.331 17 H 0.062 0.938 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.232 1.232 24 C 0.166 3.834 25 O -0.503 6.503 26 C -0.200 4.200 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.408 0.592 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.412 0.588 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 -16.621 23.960 33.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.098 3.902 4 C -0.237 4.237 5 C -0.059 4.059 6 C -0.180 4.180 7 C 0.073 3.927 8 N -0.382 5.382 9 C 0.407 3.593 10 O -0.511 6.511 11 N -0.386 5.386 12 C 0.011 3.989 13 C 0.233 3.767 14 O -0.501 6.501 15 N -0.218 5.218 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.780 3.220 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.155 1.155 24 C 0.120 3.880 25 O -0.316 6.316 26 C -0.219 4.219 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.245 0.755 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.228 0.772 39 H 0.091 0.909 40 H 0.272 0.728 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.498 -16.597 23.517 32.690 hybrid contribution 0.335 0.268 -0.347 0.552 sum -15.163 -16.329 23.169 32.146 Atomic orbital electron populations 1.23401 0.76020 1.05742 1.02601 1.86064 1.23807 1.26753 1.88192 1.18991 0.91851 0.85021 0.94303 1.21506 1.01544 0.91366 1.09302 1.21040 0.92803 0.98402 0.93613 1.20067 0.94396 0.93775 1.09785 1.19767 0.98340 0.92292 0.82252 1.45042 1.62115 1.19359 1.11688 1.15871 0.78610 0.82430 0.82351 1.90871 1.64059 1.51636 1.44529 1.44740 1.62542 1.22352 1.09013 1.20690 0.99297 0.87591 0.91355 1.20543 0.82295 0.83216 0.90664 1.90527 1.58525 1.40634 1.60452 1.41909 1.52531 1.18858 1.08458 1.19030 1.37068 1.06027 0.83911 0.91941 1.26085 0.96044 1.00695 0.98064 1.69787 1.40485 1.31421 1.14915 0.85429 0.80341 0.77331 0.78924 1.18105 1.19815 1.15505 1.18003 0.83289 0.90727 0.95968 1.84807 1.15493 1.95977 1.35368 1.20723 0.92515 0.98527 1.10180 0.91588 0.86427 0.91114 0.82676 0.83126 0.91303 0.90606 0.76083 0.75472 0.87945 0.88014 0.77179 0.90938 0.72787 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -4.99 10.49 -92.37 -0.97 -5.96 16 3 C 0.14 2.27 6.68 22.49 0.15 2.42 16 4 C -0.22 -2.71 9.04 22.38 0.20 -2.51 16 5 C -0.04 -0.53 9.66 22.24 0.21 -0.31 16 6 C -0.18 -2.90 5.26 -19.75 -0.10 -3.00 16 7 C 0.20 3.79 5.46 85.63 0.47 4.26 16 8 N -0.73 -17.08 5.55 -482.29 -2.68 -19.76 16 9 C 0.71 21.72 8.57 179.05 1.53 23.26 16 10 O -0.63 -22.78 16.34 -3.98 -0.07 -22.84 16 11 N -0.73 -23.44 5.53 -482.30 -2.67 -26.10 16 12 C 0.14 4.70 6.15 85.63 0.53 5.23 16 13 C 0.45 19.78 7.85 87.66 0.69 20.47 16 14 O -0.62 -32.34 15.24 -3.08 -0.05 -32.39 16 15 N -0.58 -26.88 5.09 -306.97 -1.56 -28.44 16 16 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 17 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 18 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 19 N -0.93 -54.81 13.96 21.67 0.30 -54.50 16 20 Si 0.96 38.38 27.74 68.60 1.90 40.29 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 24 C 0.17 2.83 6.67 22.49 0.15 2.98 16 25 O -0.50 -8.40 12.73 -92.35 -1.18 -9.58 16 26 C -0.20 -3.43 9.93 22.46 0.22 -3.20 16 27 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.27 7.66 -2.38 -0.02 0.25 16 30 H 0.16 1.12 6.29 -2.91 -0.02 1.10 16 31 H 0.15 1.43 8.03 -2.91 -0.02 1.41 16 32 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 33 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 34 H 0.40 8.68 8.48 -92.71 -0.79 7.90 16 35 H 0.41 13.30 7.45 -92.71 -0.69 12.61 16 36 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.39 15.31 5.76 -92.71 -0.53 14.77 16 39 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.41 3.21 9.06 -74.05 -0.67 2.54 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -79.96 358.58 -2.08 -82.04 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -1.61 Total: 44.61 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 6.49 Total: 32.64 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -6.61 Total: -128.81 kcal Atomic # 8 Polarization: -68.51 SS G_CDS: -2.26 Total: -70.77 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.29 kcal Total: -79.96 -2.08 -82.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.639 kcal (2) G-P(sol) polarization free energy of solvation -79.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds