Wall clock time and date at job start Tue Mar 31 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47682 * 2 1 4 4 O 1.45193 * 109.47468 * 239.99393 * 2 1 3 5 5 C 1.34736 * 117.00069 * 90.00216 * 4 2 1 6 6 O 1.21489 * 119.99316 * 0.02562 * 5 4 2 7 7 C 1.47584 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.40994 * 125.98227 * 180.02562 * 7 5 4 9 9 C 1.36158 * 107.95147 * 179.97438 * 8 7 5 10 10 N 1.35814 * 107.32598 * 0.35443 * 9 8 7 11 11 N 1.31887 * 125.98042 * 0.07083 * 7 5 4 12 12 C 1.47427 * 108.06595 * 179.35271 * 10 9 8 13 13 C 1.54641 * 102.34602 * 344.65002 * 12 10 9 14 14 O 1.36120 * 140.86253 * 180.69582 * 9 8 7 15 15 C 1.50705 * 109.46621 * 119.99618 * 2 1 3 16 16 O 1.21280 * 119.99925 * 120.00325 * 15 2 1 17 17 N 1.34776 * 120.00171 * 299.99525 * 15 2 1 18 18 C 1.46502 * 119.99898 * 0.02562 * 17 15 2 19 19 C 1.46504 * 120.00085 * 180.02562 * 17 15 2 20 20 C 1.50696 * 109.47047 * 90.00339 * 19 17 15 21 21 H 1.08001 * 119.99914 * 0.02562 * 20 19 17 22 22 C 1.37874 * 119.99884 * 179.97438 * 20 19 17 23 23 N 1.31516 * 120.00548 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99803 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46767 * 60.00328 * 24 22 20 26 26 H 1.48503 * 109.46568 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47000 * 300.00231 * 24 22 20 28 28 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46970 * 300.00835 * 1 2 3 30 30 H 1.09007 * 109.46533 * 60.00237 * 1 2 3 31 31 H 1.07998 * 126.02185 * 359.94608 * 8 7 5 32 32 H 1.09001 * 110.82897 * 102.86981 * 12 10 9 33 33 H 1.09004 * 110.82740 * 226.43515 * 12 10 9 34 34 H 1.09008 * 110.85136 * 266.67674 * 13 12 10 35 35 H 1.09004 * 111.02412 * 143.13198 * 13 12 10 36 36 H 1.09000 * 109.46954 * 89.99793 * 18 17 15 37 37 H 1.09003 * 109.47102 * 209.99490 * 18 17 15 38 38 H 1.08998 * 109.46691 * 329.99452 * 18 17 15 39 39 H 1.08999 * 109.47033 * 210.00224 * 19 17 15 40 40 H 1.09006 * 109.46872 * 330.00132 * 19 17 15 41 41 H 0.96993 * 120.00573 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 -1.1854 5 6 2.2180 0.0666 -2.2852 6 8 1.9979 1.2610 -2.2542 7 6 2.7089 -0.5614 -3.5272 8 6 2.9652 0.1010 -4.7452 9 6 3.4034 -0.8247 -5.6423 10 7 3.4134 -2.0270 -5.0106 11 7 2.9837 -1.8407 -3.6925 12 6 3.8711 -3.0455 -5.9732 13 6 3.7317 -2.3085 -7.3256 14 8 3.8276 -0.9273 -6.9316 15 6 2.0322 -0.7104 1.2306 16 8 2.7295 -1.6964 1.1194 17 7 1.7067 -0.2498 2.4546 18 6 0.8641 0.9411 2.5889 19 6 2.1954 -0.9400 3.6509 20 6 3.5227 -0.3560 4.0608 21 1 3.9585 0.4491 3.4878 22 6 4.1803 -0.8488 5.1679 23 7 3.6494 -1.8289 5.8660 24 14 5.8260 -0.1253 5.6756 25 1 5.6611 1.3208 5.9704 26 1 6.3212 -0.8249 6.8883 27 1 6.8040 -0.2970 4.5714 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 2.8362 1.1566 -4.9334 32 1 4.9098 -3.3175 -5.7852 33 1 3.2275 -3.9246 -5.9427 34 1 2.7638 -2.5154 -7.7823 35 1 4.5432 -2.5762 -8.0023 36 1 -0.1838 0.6429 2.6224 37 1 1.1218 1.4667 3.5084 38 1 1.0274 1.5997 1.7359 39 1 1.4774 -0.8147 4.4614 40 1 2.3168 -2.0014 3.4339 41 1 4.1122 -2.1758 6.6446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811351520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:04 Heat of formation + Delta-G solvation = -29.062914 kcal Electronic energy + Delta-G solvation = -26906.043765 eV Core-core repulsion = 22790.722814 eV Total energy + Delta-G solvation = -4115.320951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.69305 -40.61964 -39.17778 -38.59436 -36.37691 -34.91377 -33.74287 -32.89111 -31.61736 -30.37114 -29.28881 -27.65291 -26.26591 -25.57695 -24.19429 -23.35344 -22.24873 -21.76088 -20.39815 -18.85863 -18.36412 -17.67055 -16.93464 -16.62566 -16.52332 -16.23106 -16.10028 -15.63468 -15.42830 -15.14239 -14.67160 -14.52861 -14.16288 -13.98131 -13.51192 -13.30419 -13.22314 -12.86487 -12.77125 -12.38984 -12.17238 -12.08295 -11.81295 -11.60472 -11.35080 -11.23937 -11.12172 -10.91907 -10.86681 -10.68561 -10.53892 -10.14934 -9.64417 -9.63766 -8.91427 -8.87373 -8.42273 -7.69851 -6.03532 -4.08422 0.88338 1.39408 1.63319 2.12142 2.68876 2.94476 3.30061 3.34204 3.38087 3.42688 3.44145 3.85004 4.05294 4.12589 4.40554 4.46320 4.55641 4.72691 4.80733 4.87154 4.92992 5.02606 5.12355 5.17150 5.31025 5.45192 5.54156 5.67267 5.69583 5.86401 5.96069 6.03367 6.25116 6.31387 6.42449 6.99698 7.06114 7.41814 7.48944 7.66356 7.92529 8.22589 8.31863 8.87519 9.02370 9.56534 11.04588 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.002681 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.910938 B =10441.723582 C =11230.052121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 H 0.110 0.890 4 O -0.307 6.307 5 C 0.556 3.444 6 O -0.490 6.490 7 C 0.068 3.932 8 C -0.209 4.209 9 C 0.233 3.767 10 N -0.410 5.410 11 N -0.176 5.176 12 C 0.096 3.904 13 C 0.042 3.958 14 O -0.277 6.277 15 C 0.509 3.491 16 O -0.516 6.516 17 N -0.596 5.596 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.170 0.830 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.268 1.380 -25.855 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.011 3.989 3 H 0.127 0.873 4 O -0.221 6.221 5 C 0.396 3.604 6 O -0.375 6.375 7 C -0.097 4.097 8 C -0.238 4.238 9 C 0.066 3.934 10 N -0.208 5.208 11 N -0.007 5.007 12 C -0.024 4.024 13 C -0.034 4.034 14 O -0.184 6.184 15 C 0.293 3.707 16 O -0.391 6.391 17 N -0.330 5.330 18 C -0.068 4.068 19 C 0.129 3.871 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.188 0.812 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.805 -0.033 -25.267 25.720 hybrid contribution 0.964 1.053 -0.061 1.429 sum -3.841 1.020 -25.328 25.638 Atomic orbital electron populations 1.22422 0.92190 1.04277 1.04442 1.22730 0.95877 0.97751 0.82519 0.87279 1.86746 1.76016 1.40325 1.19001 1.19399 0.74277 0.84314 0.82374 1.90861 1.47943 1.14883 1.83783 1.20634 1.04644 0.91296 0.93081 1.19935 1.13814 1.00517 0.89526 1.20678 0.98782 0.89627 0.84337 1.50855 1.52636 1.08480 1.08808 1.78085 1.16511 1.16143 0.89960 1.23329 1.03207 0.91828 0.84048 1.24489 1.05683 0.77461 0.95787 1.87152 1.80838 1.28018 1.22390 1.19724 0.81785 0.85441 0.83769 1.90725 1.36721 1.25879 1.85787 1.48053 1.49914 1.28434 1.06587 1.21894 0.93944 0.88044 1.02964 1.19347 0.94333 0.93767 0.79689 1.21397 1.04900 1.19199 1.11276 0.92436 1.24928 0.97958 0.94932 0.96215 1.69917 1.39093 1.25996 1.18356 0.86548 0.83880 0.79046 0.77905 1.20198 1.21154 1.20147 0.90878 0.88688 0.91182 0.81230 0.87262 0.86552 0.88620 0.84975 0.92997 0.90308 0.92212 0.94565 0.93642 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.19 37.16 0.34 -2.01 16 2 C 0.07 1.21 2.18 -27.88 -0.06 1.15 16 3 H 0.11 1.78 6.42 -51.93 -0.33 1.45 16 4 O -0.31 -5.71 9.42 -47.27 -0.45 -6.16 16 5 C 0.56 9.24 7.94 34.54 0.27 9.51 16 6 O -0.49 -8.22 16.16 -19.26 -0.31 -8.53 16 7 C 0.07 1.03 7.11 -82.99 -0.59 0.44 16 8 C -0.21 -2.61 10.60 -39.29 -0.42 -3.03 16 9 C 0.23 2.59 8.32 -16.54 -0.14 2.45 16 10 N -0.41 -4.67 5.01 -59.64 -0.30 -4.97 16 11 N -0.18 -2.71 12.73 33.30 0.42 -2.29 16 12 C 0.10 0.51 8.10 -2.67 -0.02 0.49 16 13 C 0.04 0.14 8.08 38.02 0.31 0.45 16 14 O -0.28 -2.32 11.19 -20.12 -0.23 -2.55 16 15 C 0.51 11.27 7.15 -10.98 -0.08 11.19 16 16 O -0.52 -13.95 16.08 -14.10 -0.23 -14.17 16 17 N -0.60 -12.84 2.86 -182.95 -0.52 -13.36 16 18 C 0.08 1.18 8.80 59.85 0.53 1.70 16 19 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 20 C -0.53 -15.19 9.39 -34.44 -0.32 -15.52 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 24 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.10 4.53 -51.93 -0.24 0.86 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.17 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.18 8.14 -51.92 -0.42 -0.25 16 35 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 37 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 39 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -38.44 355.58 -5.80 -44.25 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.97 Total: -3.70 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -0.30 Total: 15.01 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.34 Total: -46.66 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.21 Total: -31.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.44 -5.80 -44.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811351520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.186 kcal (2) G-P(sol) polarization free energy of solvation -38.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds