Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.46976 * 2 1 4 4 C 1.46503 * 120.00305 * 269.99861 * 3 2 1 5 5 C 1.50705 * 109.46753 * 270.00115 * 4 3 2 6 6 H 1.07996 * 120.00004 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00197 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46830 * 90.00340 * 9 7 5 11 11 H 1.48496 * 109.47253 * 210.00414 * 9 7 5 12 12 H 1.48500 * 109.46992 * 330.00443 * 9 7 5 13 13 C 1.34786 * 120.00163 * 90.00024 * 3 2 1 14 14 O 1.21274 * 120.00325 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99646 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.46723 * 180.02562 * 15 13 3 17 17 C 1.34733 * 116.99351 * 180.02562 * 16 15 13 18 18 O 1.21488 * 120.00379 * 359.97438 * 17 16 15 19 19 C 1.47598 * 119.99637 * 179.97438 * 17 16 15 20 20 C 1.40988 * 125.98312 * 180.02562 * 19 17 16 21 21 C 1.36151 * 107.95431 * 180.28697 * 20 19 17 22 22 N 1.35814 * 107.32012 * 359.32853 * 21 20 19 23 23 N 1.31888 * 125.97907 * 359.97438 * 19 17 16 24 24 C 1.47768 * 108.14393 * 181.21051 * 22 21 20 25 25 C 1.54649 * 102.19756 * 14.97373 * 24 22 21 26 26 O 1.36119 * 140.87708 * 179.33510 * 21 20 19 27 27 H 1.09003 * 109.47154 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47307 * 299.99940 * 1 2 3 29 29 H 1.08998 * 109.46838 * 59.99808 * 1 2 3 30 30 H 1.09000 * 109.47173 * 239.99531 * 2 1 3 31 31 H 1.08998 * 109.46838 * 120.00192 * 2 1 3 32 32 H 1.08993 * 109.46612 * 29.99772 * 4 3 2 33 33 H 1.08998 * 109.47433 * 150.00304 * 4 3 2 34 34 H 0.96998 * 120.00229 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47178 * 59.99780 * 15 13 3 36 36 H 1.09001 * 109.47180 * 300.00061 * 15 13 3 37 37 H 1.08001 * 126.02402 * 0.28347 * 20 19 17 38 38 H 1.09004 * 110.78000 * 256.87048 * 24 22 21 39 39 H 1.08994 * 111.02309 * 133.19512 * 24 22 21 40 40 H 1.09002 * 110.85298 * 217.12214 * 25 24 22 41 41 H 1.09001 * 110.84909 * 93.69801 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7036 6 1 4.3427 1.2302 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1258 -3.6180 9 14 5.9133 2.0956 -3.4174 10 1 5.9760 0.8745 -4.2601 11 1 6.3925 3.2627 -4.2005 12 1 6.7736 1.9157 -2.2204 13 6 2.2430 2.0166 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9913 1.3063 2.4724 16 8 2.3053 2.1961 3.5760 17 6 2.1336 1.7105 4.8210 18 8 1.7321 0.5749 4.9801 19 6 2.4334 2.5581 5.9915 20 6 2.3005 2.1807 7.3434 21 6 2.6685 3.2415 8.1134 22 7 3.0342 4.2437 7.2730 23 7 2.8733 3.8009 5.9558 24 6 3.4657 5.3960 8.0912 25 6 3.6533 4.7545 9.4858 26 8 2.7842 3.6090 9.4190 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 3.6753 3.5163 -4.4438 35 1 2.6211 0.4186 2.5303 36 1 0.9432 1.0125 2.5299 37 1 1.9656 1.2195 7.7045 38 1 2.6912 6.1626 8.1183 39 1 4.4061 5.8063 7.7235 40 1 3.3350 5.4377 10.2732 41 1 4.6886 4.4479 9.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811351818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -36.679955 kcal Electronic energy + Delta-G solvation = -26573.342431 eV Core-core repulsion = 22457.691181 eV Total energy + Delta-G solvation = -4115.651250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.69317 -40.50682 -39.12255 -38.63889 -36.38810 -35.26747 -33.72706 -32.81936 -30.67336 -30.13825 -29.38878 -29.01517 -26.66655 -25.08695 -23.37177 -23.03661 -22.45299 -21.80806 -20.50164 -18.67980 -18.29354 -17.68122 -16.98362 -16.66325 -16.61333 -16.39223 -16.21835 -15.64240 -15.50123 -15.14757 -14.80056 -14.42106 -14.25340 -13.91173 -13.46414 -13.32117 -13.27698 -12.92268 -12.79115 -12.54888 -12.12506 -12.03131 -11.79012 -11.60574 -11.24870 -11.21257 -10.95531 -10.90795 -10.85659 -10.59807 -10.49998 -10.12558 -9.65735 -9.63647 -8.96279 -8.93132 -8.42734 -7.72173 -6.03703 -4.08369 0.86246 1.36945 1.61947 2.09700 2.67540 2.90925 3.28872 3.31718 3.38377 3.42524 3.43974 3.83171 4.04726 4.12458 4.40575 4.46469 4.55692 4.72001 4.85554 4.88803 4.90942 5.13987 5.17351 5.23232 5.30994 5.39040 5.45615 5.61773 5.76426 5.92655 6.02457 6.20993 6.22603 6.40747 6.48012 7.00300 7.05160 7.42623 7.49708 7.62835 7.92588 8.22785 8.32572 8.87601 9.02401 9.56562 11.04476 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.002584 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.452286 B =10832.294396 C =11937.382341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.515 6.515 15 C 0.049 3.951 16 O -0.311 6.311 17 C 0.556 3.444 18 O -0.490 6.490 19 C 0.067 3.933 20 C -0.209 4.209 21 C 0.233 3.767 22 N -0.410 5.410 23 N -0.176 5.176 24 C 0.097 3.903 25 C 0.041 3.959 26 O -0.277 6.277 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -0.627 25.545 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.390 6.390 15 C -0.029 4.029 16 O -0.224 6.224 17 C 0.396 3.604 18 O -0.375 6.375 19 C -0.098 4.098 20 C -0.238 4.238 21 C 0.066 3.934 22 N -0.208 5.208 23 N -0.006 5.006 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.184 6.184 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.188 0.812 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.545 0.760 24.779 24.921 hybrid contribution 0.786 -0.746 0.103 1.089 sum -1.759 0.014 24.882 24.944 Atomic orbital electron populations 1.22240 0.96536 1.01696 1.02443 1.21514 0.93760 0.83940 1.03061 1.48204 1.63952 1.13420 1.07060 1.19330 0.96450 0.93735 0.77551 1.21435 0.96885 1.31991 1.06296 0.92369 1.24932 0.97899 0.94877 0.96383 1.69931 1.35719 1.33384 1.14326 0.86485 0.84642 0.77649 0.78592 1.20640 1.21097 1.19858 1.19664 0.79838 0.87173 0.84219 1.90734 1.44207 1.17444 1.86642 1.23090 1.03014 0.92612 0.84137 1.86702 1.77948 1.44275 1.13490 1.19396 0.74559 0.84197 0.82234 1.90875 1.42127 1.18004 1.86541 1.20622 1.04740 0.92487 0.91940 1.19924 1.16579 0.99173 0.88120 1.20676 1.00126 0.91377 0.81232 1.50959 1.52639 1.12814 1.04387 1.78107 1.19377 1.11019 0.92119 1.23400 1.03964 0.87457 0.87516 1.24487 0.96143 0.85962 0.96900 1.87152 1.64959 1.47352 1.18930 0.91885 0.93074 0.91815 0.89419 0.91682 0.94607 0.93694 0.92699 0.88248 0.88344 0.81227 0.87252 0.86452 0.84993 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.59 2.46 -175.06 -0.43 -13.02 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 11.00 7.75 -10.98 -0.09 10.92 16 14 O -0.52 -13.70 16.08 -14.10 -0.23 -13.93 16 15 C 0.05 0.82 4.51 36.01 0.16 0.98 16 16 O -0.31 -5.66 9.76 -47.26 -0.46 -6.13 16 17 C 0.56 8.90 7.97 34.55 0.28 9.17 16 18 O -0.49 -7.91 16.69 -19.26 -0.32 -8.23 16 19 C 0.07 0.99 7.11 -82.98 -0.59 0.40 16 20 C -0.21 -2.52 10.60 -39.29 -0.42 -2.94 16 21 C 0.23 2.52 8.32 -16.54 -0.14 2.38 16 22 N -0.41 -4.59 5.02 -59.40 -0.30 -4.89 16 23 N -0.18 -2.67 12.74 33.30 0.42 -2.24 16 24 C 0.10 0.50 8.13 -2.48 -0.02 0.48 16 25 C 0.04 0.14 8.07 38.02 0.31 0.44 16 26 O -0.28 -2.25 11.19 -20.12 -0.23 -2.47 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.10 1.47 7.40 -51.93 -0.38 1.08 16 36 H 0.10 1.40 7.18 -51.93 -0.37 1.03 16 37 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.13 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -37.96 361.53 -6.16 -44.12 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -5.19 Total: -4.04 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: -0.60 Total: 14.31 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.43 Total: -46.06 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.23 Total: -30.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.96 -6.16 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811351818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.444 kcal (2) G-P(sol) polarization free energy of solvation -37.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds