Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47031 * 2 1 4 4 C 1.46500 * 120.00019 * 270.00253 * 3 2 1 5 5 C 1.50700 * 109.47007 * 269.99957 * 4 3 2 6 6 H 1.07994 * 120.00157 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99830 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99799 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47455 * 60.00161 * 9 7 5 11 11 H 1.48501 * 109.46802 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47250 * 299.99599 * 9 7 5 13 13 C 1.34774 * 119.99632 * 90.00201 * 3 2 1 14 14 O 1.21287 * 119.99601 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00566 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.47687 * 180.02562 * 15 13 3 17 17 C 1.34675 * 117.00116 * 180.02562 * 16 15 13 18 18 O 1.21418 * 120.00108 * 359.97438 * 17 16 15 19 19 C 1.48193 * 119.99586 * 179.97438 * 17 16 15 20 20 N 1.32567 * 119.11709 * 359.72926 * 19 17 16 21 21 C 1.31941 * 120.83988 * 179.75858 * 20 19 17 22 22 C 1.39472 * 119.07906 * 0.50402 * 21 20 19 23 23 O 1.35719 * 120.80456 * 179.72874 * 22 21 20 24 24 C 1.42891 * 117.00329 * 0.02562 * 23 22 21 25 25 C 1.39469 * 118.38650 * 359.75376 * 22 21 20 26 26 N 1.31941 * 119.08302 * 359.97438 * 25 22 21 27 27 H 1.09000 * 109.46625 * 299.99833 * 1 2 3 28 28 H 1.08998 * 109.46937 * 59.99488 * 1 2 3 29 29 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46907 * 240.00489 * 2 1 3 31 31 H 1.08998 * 109.47107 * 119.99984 * 2 1 3 32 32 H 1.09000 * 109.47310 * 30.00126 * 4 3 2 33 33 H 1.09003 * 109.47191 * 149.99789 * 4 3 2 34 34 H 0.97003 * 119.99348 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47280 * 59.99824 * 15 13 3 36 36 H 1.08999 * 109.47129 * 300.00090 * 15 13 3 37 37 H 1.07998 * 120.45997 * 180.26089 * 21 20 19 38 38 H 1.08995 * 109.47699 * 179.97438 * 24 23 22 39 39 H 1.09002 * 109.47363 * 300.00465 * 24 23 22 40 40 H 1.09007 * 109.46811 * 60.00248 * 24 23 22 41 41 H 1.08000 * 120.45807 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3906 -2.8775 8 7 3.3495 3.1276 -3.6171 9 14 5.9133 2.0965 -3.4171 10 1 6.1401 0.6399 -3.5956 11 1 6.1607 2.7967 -4.7031 12 1 6.8412 2.6189 -2.3820 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9914 1.3064 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1338 1.7107 4.8205 18 8 1.7326 0.5758 4.9795 19 6 2.4349 2.5618 5.9957 20 7 2.8772 3.7963 5.8017 21 6 3.1513 4.5849 6.8234 22 6 2.9797 4.0994 8.1196 23 8 3.2562 4.8786 9.1959 24 6 3.7249 6.2030 8.9348 25 6 2.5175 2.7937 8.2828 26 7 2.2593 2.0663 7.2127 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6758 3.5186 -4.4426 35 1 2.6212 0.4186 2.5302 36 1 0.9433 1.0126 2.5299 37 1 3.5073 5.5911 6.6583 38 1 3.9068 6.7167 9.8787 39 1 4.6514 6.1544 8.3627 40 1 2.9734 6.7483 8.3638 41 1 2.3730 2.3837 9.2714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815523318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -112.931276 kcal Electronic energy + Delta-G solvation = -26466.475770 eV Core-core repulsion = 22347.518014 eV Total energy + Delta-G solvation = -4118.957756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.72644 -41.63501 -40.55359 -39.67331 -37.74507 -36.98182 -35.20406 -34.92855 -32.71553 -31.73095 -30.71228 -29.00793 -28.34543 -26.41158 -25.59774 -24.80961 -24.12990 -22.83145 -20.37648 -19.99930 -19.37478 -19.18513 -18.62579 -18.23052 -18.02487 -17.70467 -17.20650 -17.10540 -16.38796 -16.27267 -15.86459 -15.72053 -15.42404 -14.86615 -14.72992 -14.67178 -14.51107 -13.96739 -13.91748 -13.59622 -13.43483 -13.27327 -13.08623 -12.65760 -12.63257 -12.54846 -12.51501 -12.33663 -12.22880 -12.07399 -12.04466 -11.81900 -11.73279 -10.74338 -10.63569 -10.54227 -9.99177 -9.54171 -8.22454 -6.36824 -0.91731 -0.21107 0.81536 0.99790 1.37409 1.41817 1.48771 1.61524 1.86397 2.17871 2.40455 2.46766 2.73443 2.90928 3.07510 3.18613 3.40601 3.54613 3.66358 3.88419 3.94168 4.15933 4.29164 4.36374 4.39259 4.51142 4.60440 4.69646 4.79271 4.84667 4.95763 4.97593 5.04323 5.20885 5.37624 5.46318 5.54799 5.80145 5.88825 6.04975 6.21333 6.59976 6.68038 6.71968 7.21403 7.37026 8.84898 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002639 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.331520 B =10606.548461 C =11818.095475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.059 3.941 16 O -0.326 6.326 17 C 0.541 3.459 18 O -0.489 6.489 19 C 0.224 3.776 20 N -0.452 5.452 21 C 0.055 3.945 22 C 0.082 3.918 23 O -0.292 6.292 24 C 0.002 3.998 25 C 0.120 3.880 26 N -0.440 5.440 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.031 0.969 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.211 0.789 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 0.109 26.810 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.018 4.018 16 O -0.239 6.239 17 C 0.382 3.618 18 O -0.375 6.375 19 C -0.040 4.040 20 N -0.169 5.169 21 C -0.112 4.112 22 C 0.029 3.971 23 O -0.200 6.200 24 C -0.091 4.091 25 C -0.050 4.050 26 N -0.157 5.157 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.227 0.773 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.694 -0.189 26.003 26.143 hybrid contribution 1.007 0.855 -0.346 1.365 sum -1.687 0.666 25.657 25.721 Atomic orbital electron populations 1.22183 0.94310 1.03825 1.01857 1.21890 0.95587 0.80913 1.04514 1.48197 1.63626 1.15295 1.05545 1.18795 0.95613 0.91663 0.79684 1.21678 0.97828 1.32237 1.06656 0.92750 1.25848 1.02395 0.94422 0.96388 1.70045 1.37803 1.34005 1.14841 0.85472 0.78988 0.79048 0.77329 1.18421 1.20284 1.20421 1.20427 0.78474 0.86645 0.85701 1.90697 1.46947 1.20097 1.87665 1.23008 1.05226 0.92020 0.81522 1.86685 1.78378 1.44858 1.14003 1.20081 0.74789 0.84529 0.82442 1.90831 1.41655 1.18452 1.86519 1.20773 1.03520 0.89773 0.89980 1.68255 1.07514 1.04088 1.37088 1.24121 0.98870 1.01833 0.86423 1.21282 0.93384 0.93606 0.88862 1.86123 1.78556 1.27249 1.28090 1.23718 1.00288 0.78590 1.06539 1.23447 0.94665 0.87956 0.98889 1.68080 1.12767 1.36951 0.97904 0.92436 0.93658 0.88325 0.89877 0.88315 0.95111 0.98259 0.92346 0.85847 0.85450 0.77265 0.84762 0.90664 0.90587 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 10.24 71.98 0.74 -3.37 16 2 C 0.09 2.84 5.93 86.38 0.51 3.36 16 3 N -0.59 -25.71 2.46 -826.15 -2.03 -27.74 16 4 C 0.26 14.34 5.16 85.63 0.44 14.78 16 5 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 9 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.50 22.23 7.75 87.66 0.68 22.91 16 14 O -0.57 -31.92 16.08 15.75 0.25 -31.67 16 15 C 0.06 1.96 4.51 71.23 0.32 2.28 16 16 O -0.33 -12.12 9.55 -49.45 -0.47 -12.60 16 17 C 0.54 18.14 7.98 70.47 0.56 18.71 16 18 O -0.49 -16.74 16.65 20.10 0.33 -16.41 16 19 C 0.22 6.65 7.58 137.52 1.04 7.69 16 20 N -0.45 -12.61 10.15 -188.86 -1.92 -14.53 16 21 C 0.06 0.97 10.31 84.97 0.88 1.85 16 22 C 0.08 1.13 6.75 22.86 0.15 1.29 16 23 O -0.29 -2.63 10.51 -90.40 -0.95 -3.58 16 24 C 0.00 0.01 9.84 113.37 1.12 1.12 16 25 C 0.12 1.89 11.28 84.97 0.96 2.85 16 26 N -0.44 -10.97 10.11 -188.86 -1.91 -12.88 16 27 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 31 H 0.10 2.37 6.44 -2.39 -0.02 2.36 16 32 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.00 -0.05 7.42 -2.39 -0.02 -0.06 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.12 3.49 7.39 -2.39 -0.02 3.48 16 36 H 0.13 3.47 7.18 -2.39 -0.02 3.45 16 37 H 0.21 2.13 6.47 -2.91 -0.02 2.11 16 38 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.07 0.10 7.71 -2.39 -0.02 0.08 16 40 H 0.08 0.08 7.71 -2.38 -0.02 0.06 16 41 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -85.78 364.10 4.79 -80.99 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.07 Total: 4.30 kcal Atomic # 6 Polarization: 34.83 SS G_CDS: 8.10 Total: 42.93 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -5.57 Total: -111.28 kcal Atomic # 8 Polarization: -63.42 SS G_CDS: -0.83 Total: -64.25 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -85.78 4.79 -80.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815523318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.940 kcal (2) G-P(sol) polarization free energy of solvation -85.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds