Wall clock time and date at job start Tue Mar 31 2020 04:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47149 * 2 1 4 4 C 1.50697 * 109.47499 * 239.99575 * 2 1 3 5 5 O 1.21279 * 119.99966 * 262.57663 * 4 2 1 6 6 N 1.34780 * 119.99496 * 82.56981 * 4 2 1 7 7 C 1.47019 * 125.65233 * 0.02787 * 6 4 2 8 8 C 1.54322 * 107.27348 * 181.01869 * 7 6 4 9 9 C 1.55156 * 102.94061 * 22.19504 * 8 7 6 10 10 O 1.42904 * 111.00848 * 82.56924 * 9 8 7 11 11 C 1.50701 * 111.00691 * 206.38605 * 9 8 7 12 12 H 1.07999 * 119.99581 * 26.86694 * 11 9 8 13 13 C 1.37875 * 120.00335 * 206.86990 * 11 9 8 14 14 N 1.31508 * 120.00210 * 172.50707 * 13 11 9 15 15 Si 1.86807 * 119.99892 * 352.50873 * 13 11 9 16 16 H 1.48492 * 109.47277 * 87.80058 * 15 13 11 17 17 H 1.48493 * 109.46760 * 207.80059 * 15 13 11 18 18 H 1.48503 * 109.46902 * 327.80126 * 15 13 11 19 19 C 1.47423 * 125.64404 * 179.71979 * 6 4 2 20 20 C 1.50701 * 109.46884 * 119.99577 * 2 1 3 21 21 C 1.38250 * 119.97365 * 52.18886 * 20 2 1 22 22 C 1.38202 * 120.02635 * 179.97438 * 21 20 2 23 23 C 1.38460 * 119.97193 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.02340 * 180.02562 * 23 22 21 25 25 C 1.38459 * 119.95125 * 0.02562 * 23 22 21 26 26 C 1.38198 * 119.97488 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47029 * 300.00152 * 1 2 3 28 28 H 1.08995 * 109.46311 * 60.00359 * 1 2 3 29 29 H 1.09003 * 109.46719 * 179.97438 * 1 2 3 30 30 H 0.96700 * 114.00164 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.88307 * 300.44188 * 7 6 4 32 32 H 1.08997 * 109.88014 * 61.44718 * 7 6 4 33 33 H 1.08994 * 110.72036 * 140.55610 * 8 7 6 34 34 H 1.09005 * 110.72071 * 263.83378 * 8 7 6 35 35 H 0.96698 * 113.99316 * 64.82579 * 10 9 8 36 36 H 0.97002 * 120.00307 * 180.02562 * 14 13 11 37 37 H 1.09007 * 110.36931 * 274.74676 * 19 6 4 38 38 H 1.09004 * 110.36939 * 37.06939 * 19 6 4 39 39 H 1.07997 * 119.98588 * 0.27868 * 21 20 2 40 40 H 1.07993 * 120.01167 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.01363 * 179.97438 * 25 23 22 42 42 H 1.07999 * 119.98818 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0325 -0.7105 -1.2304 5 8 2.3626 -1.8757 -1.1654 6 7 2.1148 -0.0509 -2.4029 7 6 1.7500 1.3563 -2.6219 8 6 1.9848 1.6633 -4.1160 9 6 1.9312 0.2583 -4.7720 10 8 0.5811 -0.1440 -5.0117 11 6 2.7357 0.2259 -6.0459 12 1 3.5683 0.9013 -6.1760 13 6 2.4087 -0.6659 -7.0453 14 7 3.0124 -0.5968 -8.2116 15 14 1.1082 -1.9724 -6.7426 16 1 -0.2314 -1.4229 -7.0719 17 1 1.3836 -3.1528 -7.6003 18 1 1.1389 -2.3798 -5.3149 19 6 2.5917 -0.6195 -3.6767 20 6 2.0324 -0.7103 1.2305 21 6 1.5703 -1.9777 1.5334 22 6 2.0306 -2.6303 2.6614 23 6 2.9545 -2.0141 3.4884 24 9 3.4055 -2.6514 4.5910 25 6 3.4157 -0.7445 3.1846 26 6 2.9540 -0.0938 2.0562 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9704 1.4236 0.0004 31 1 0.7001 1.5103 -2.3723 32 1 2.3758 2.0017 -2.0057 33 1 1.1932 2.3022 -4.5074 34 1 2.9620 2.1222 -4.2664 35 1 0.1153 0.4064 -5.6561 36 1 2.7821 -1.2240 -8.9149 37 1 3.6780 -0.5536 -3.7386 38 1 2.2675 -1.6555 -3.7748 39 1 0.8532 -2.4598 0.8857 40 1 1.6699 -3.6204 2.8975 41 1 4.1359 -0.2627 3.8293 42 1 3.3133 0.8968 1.8193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:34 Heat of formation + Delta-G solvation = -163.520097 kcal Electronic energy + Delta-G solvation = -28222.446123 eV Core-core repulsion = 24081.374709 eV Total energy + Delta-G solvation = -4141.071413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.95003 -41.89891 -40.24283 -39.00903 -37.78914 -36.34722 -34.47488 -33.32494 -32.02346 -31.89059 -30.26051 -29.89239 -27.30651 -25.52706 -24.08153 -23.94566 -22.51311 -21.56506 -20.65264 -19.51406 -19.32856 -18.57541 -17.68521 -17.39515 -17.24853 -16.94415 -16.65921 -16.62806 -16.20810 -15.75513 -15.51765 -15.30130 -14.71342 -14.70292 -14.43421 -14.23440 -14.08784 -14.03609 -13.76324 -13.59993 -13.41018 -13.33194 -13.15543 -13.11687 -12.79768 -12.60192 -12.29502 -12.11595 -11.99246 -11.95183 -11.77393 -11.30588 -10.74190 -10.56734 -10.30583 -10.08799 -9.66901 -9.57486 -8.39294 -6.50561 0.01393 0.24322 1.39894 1.42612 1.49846 1.69813 1.92195 2.37804 2.56527 2.93291 3.01164 3.21462 3.34730 3.41186 3.50455 3.70570 3.89856 3.91029 4.02483 4.27405 4.28452 4.32598 4.41987 4.50933 4.62108 4.72157 4.77620 4.88589 4.90570 4.93595 4.99728 5.09018 5.11059 5.18309 5.20726 5.28561 5.34902 5.42215 5.52218 5.84001 6.02605 6.38223 6.56495 6.61554 6.94578 7.05037 7.27592 8.73548 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003384 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.375490 B = 8271.413653 C = 8683.055787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.186 3.814 3 O -0.530 6.530 4 C 0.492 3.508 5 O -0.579 6.579 6 N -0.601 5.601 7 C 0.114 3.886 8 C -0.142 4.142 9 C 0.214 3.786 10 O -0.563 6.563 11 C -0.544 4.544 12 H 0.055 0.945 13 C 0.028 3.972 14 N -0.930 5.930 15 Si 1.001 2.999 16 H -0.271 1.271 17 H -0.340 1.340 18 H -0.283 1.283 19 C 0.117 3.883 20 C -0.124 4.124 21 C -0.064 4.064 22 C -0.163 4.163 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.154 4.154 26 C -0.076 4.076 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 6.006 22.296 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.142 3.858 3 O -0.339 6.339 4 C 0.280 3.720 5 O -0.459 6.459 6 N -0.333 5.333 7 C -0.007 4.007 8 C -0.180 4.180 9 C 0.173 3.827 10 O -0.372 6.372 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.172 4.172 14 N -0.568 5.568 15 Si 0.836 3.164 16 H -0.198 1.198 17 H -0.273 1.273 18 H -0.210 1.210 19 C -0.006 4.006 20 C -0.126 4.126 21 C -0.082 4.082 22 C -0.182 4.182 23 C 0.066 3.934 24 F -0.125 7.125 25 C -0.172 4.172 26 C -0.094 4.094 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.244 0.756 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.178 0.822 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.882 5.012 22.703 23.757 hybrid contribution 0.411 -1.109 -0.929 1.504 sum -4.472 3.903 21.774 22.569 Atomic orbital electron populations 1.21829 0.88739 1.03656 1.05044 1.19837 0.97131 0.81892 0.86982 1.86619 1.28598 1.22426 1.96215 1.21656 0.78340 0.86952 0.85012 1.90689 1.51193 1.18441 1.85605 1.48713 1.62547 1.14065 1.07937 1.22309 1.01795 0.80142 0.96485 1.23220 1.03521 0.97303 0.94001 1.20141 0.79583 0.91485 0.91442 1.86112 1.26978 1.58767 1.65377 1.21457 1.16598 1.20620 0.99550 0.92641 1.25791 0.98348 0.98800 0.94298 1.70052 1.44342 1.37909 1.04453 0.84827 0.79050 0.76689 0.75823 1.19770 1.27258 1.21034 1.22578 0.98029 0.97645 0.82393 1.20173 0.99665 0.95863 0.96852 1.20880 0.98708 0.93655 0.94953 1.21275 0.99145 1.01999 0.95735 1.17984 0.97536 0.92788 0.85135 1.91479 1.87950 1.81944 1.51138 1.21355 1.02652 0.93523 0.99677 1.21078 0.94481 1.00968 0.92828 0.88359 0.90720 0.90784 0.75589 0.90322 0.87977 0.88622 0.90327 0.76529 0.92353 0.91202 0.94126 0.85421 0.83579 0.82189 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.55 71.98 0.62 -2.07 16 2 C 0.19 4.16 0.89 -12.28 -0.01 4.15 16 3 O -0.53 -8.87 9.30 -148.98 -1.39 -10.25 16 4 C 0.49 15.91 6.74 87.66 0.59 16.50 16 5 O -0.58 -23.49 15.48 -3.03 -0.05 -23.54 16 6 N -0.60 -19.99 3.32 -811.35 -2.70 -22.69 16 7 C 0.11 2.95 5.68 86.73 0.49 3.44 16 8 C -0.14 -4.39 6.14 31.78 0.20 -4.20 16 9 C 0.21 8.84 0.70 -10.07 -0.01 8.83 16 10 O -0.56 -22.70 8.71 -148.98 -1.30 -24.00 16 11 C -0.54 -28.01 8.86 25.60 0.23 -27.79 16 12 H 0.06 3.12 8.00 -2.91 -0.02 3.09 16 13 C 0.03 1.56 5.46 84.66 0.46 2.02 16 14 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 15 Si 1.00 48.64 24.69 68.60 1.69 50.33 16 16 H -0.27 -12.09 7.10 99.48 0.71 -11.39 16 17 H -0.34 -17.24 7.11 99.48 0.71 -16.54 16 18 H -0.28 -14.32 5.53 99.48 0.55 -13.76 16 19 C 0.12 4.92 5.94 86.93 0.52 5.43 16 20 C -0.12 -2.73 4.53 -19.86 -0.09 -2.82 16 21 C -0.06 -1.51 8.01 22.26 0.18 -1.33 16 22 C -0.16 -3.56 10.03 22.31 0.22 -3.34 16 23 C 0.08 1.80 7.30 22.38 0.16 1.97 16 24 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 25 C -0.15 -2.70 10.03 22.31 0.22 -2.48 16 26 C -0.08 -1.31 9.24 22.26 0.21 -1.10 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.51 6.93 -2.39 -0.02 1.49 16 29 H 0.07 1.51 7.00 -2.39 -0.02 1.50 16 30 H 0.39 4.54 7.57 -74.06 -0.56 3.97 16 31 H 0.08 1.84 6.93 -2.39 -0.02 1.83 16 32 H 0.10 2.04 6.50 -2.39 -0.02 2.03 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 2.45 7.99 -2.38 -0.02 2.43 16 35 H 0.38 13.30 8.56 -74.06 -0.63 12.67 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.07 3.02 8.04 -2.38 -0.02 3.00 16 38 H 0.04 1.98 6.67 -2.39 -0.02 1.96 16 39 H 0.13 3.11 7.01 -2.91 -0.02 3.09 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.17 1.78 6.43 -2.91 -0.02 1.76 16 Total: -1.00 -71.23 338.91 1.06 -70.18 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.27 Total: 20.16 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.99 Total: -2.78 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.40 Total: -77.64 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.73 Total: -57.79 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.69 Total: 50.33 kcal Total: -71.23 1.06 -70.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.344 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds