Wall clock time and date at job start Tue Mar 31 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38133 * 126.29952 * 2 1 4 4 C 1.47284 * 126.42074 * 359.95300 * 3 2 1 5 5 O 1.21530 * 120.00439 * 0.19298 * 4 3 2 6 6 O 1.34753 * 119.99500 * 180.19141 * 4 3 2 7 7 C 1.45207 * 116.99891 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47340 * 180.02562 * 7 6 4 9 9 H 1.08999 * 110.46653 * 303.82406 * 8 7 6 10 10 C 1.54089 * 110.52396 * 181.04077 * 8 7 6 11 11 N 1.47090 * 103.77814 * 241.36970 * 10 8 7 12 12 C 1.46500 * 125.56334 * 180.02562 * 11 10 8 13 13 C 1.34010 * 108.88320 * 0.02562 * 11 10 8 14 14 O 1.21504 * 123.07595 * 180.02562 * 13 11 10 15 15 O 1.33772 * 113.85503 * 359.97438 * 13 11 10 16 16 C 1.41338 * 107.14874 * 180.09462 * 3 2 1 17 17 N 1.30434 * 108.01480 * 359.62986 * 16 3 2 18 18 N 1.34225 * 126.29806 * 179.67911 * 2 1 3 19 19 C 1.46503 * 125.74387 * 0.02562 * 18 2 1 20 20 C 1.50704 * 109.47117 * 270.01931 * 19 18 2 21 21 H 1.07996 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99537 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00357 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99392 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47439 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46907 * 120.00329 * 24 22 20 27 27 H 1.48505 * 109.46671 * 239.99893 * 24 22 20 28 28 H 1.09000 * 109.47544 * 270.31674 * 1 2 3 29 29 H 1.09001 * 109.47235 * 30.31677 * 1 2 3 30 30 H 1.08999 * 109.47452 * 150.32075 * 1 2 3 31 31 H 1.08997 * 109.46982 * 299.99994 * 7 6 4 32 32 H 1.08997 * 109.46890 * 59.99935 * 7 6 4 33 33 H 1.08995 * 110.56539 * 359.94307 * 10 8 7 34 34 H 1.08999 * 110.56363 * 122.79946 * 10 8 7 35 35 H 1.09000 * 109.47569 * 179.97438 * 12 11 10 36 36 H 1.09007 * 109.46537 * 299.97316 * 12 11 10 37 37 H 1.09002 * 109.47292 * 59.96990 * 12 11 10 38 38 H 1.08002 * 125.99579 * 179.89900 * 16 3 2 39 39 H 1.09008 * 109.46697 * 30.01080 * 19 18 2 40 40 H 1.08996 * 109.47747 * 150.01315 * 19 18 2 41 41 H 0.97004 * 119.99888 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 -0.0010 5 8 0.7017 2.7873 0.0017 6 8 2.8014 3.5095 -0.0047 7 6 2.2982 4.8716 -0.0061 8 6 3.4746 5.8499 -0.0110 9 1 4.1333 5.6582 0.8360 10 6 2.9674 7.3047 0.0137 11 7 3.4805 7.8760 -1.2409 12 6 3.2724 9.2521 -1.6984 13 6 4.1695 6.9324 -1.8972 14 8 4.7072 7.1287 -2.9690 15 8 4.2122 5.7548 -1.2640 16 6 3.6598 0.6496 -0.0022 17 7 3.6340 -0.6545 0.0045 18 7 2.3015 -1.0818 0.0061 19 6 1.8498 -2.4754 0.0133 20 6 1.6939 -2.9455 1.4367 21 1 1.9102 -2.2736 2.2540 22 6 1.2753 -4.2336 1.6952 23 7 1.0125 -5.0519 0.6999 24 14 1.0828 -4.8165 3.4595 25 1 1.4400 -3.7133 4.3872 26 1 -0.3252 -5.2256 3.6948 27 1 1.9813 -5.9744 3.6990 28 1 -0.3634 0.0057 1.0276 29 1 -0.3634 0.8871 -0.5187 30 1 -0.3634 -0.8928 -0.5088 31 1 1.6884 5.0328 -0.8950 32 1 1.6923 5.0359 0.8849 33 1 1.8778 7.3302 0.0285 34 1 3.3755 7.8379 0.8723 35 1 3.7662 9.3940 -2.6597 36 1 2.2044 9.4411 -1.8072 37 1 3.6916 9.9449 -0.9687 38 1 4.5461 1.2668 -0.0043 39 1 0.8914 -2.5493 -0.5007 40 1 2.5846 -3.0983 -0.4967 41 1 0.7176 -5.9580 0.8819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892993033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:23 Heat of formation + Delta-G solvation = -79.881684 kcal Electronic energy + Delta-G solvation = -26542.131786 eV Core-core repulsion = 22424.607168 eV Total energy + Delta-G solvation = -4117.524618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99153 -40.92207 -39.67560 -37.64829 -36.16879 -35.89542 -33.95646 -32.23925 -31.97580 -31.23427 -28.56548 -27.62134 -26.80611 -25.97046 -23.69104 -23.04469 -22.38675 -21.39976 -20.36756 -18.98316 -18.05526 -17.51871 -17.41236 -17.12472 -16.82218 -16.24751 -16.14700 -15.28377 -15.17100 -14.67286 -14.58780 -14.51169 -14.26187 -14.09216 -13.42225 -13.11984 -13.07775 -12.93278 -12.72155 -12.59286 -12.53167 -12.39830 -12.17687 -11.86597 -11.58086 -11.15172 -11.03081 -10.96751 -10.94357 -10.73898 -10.47865 -10.34579 -9.96399 -9.87472 -9.44680 -8.75482 -8.67643 -8.11266 -6.37740 -4.45817 1.84598 2.00437 2.37235 2.57789 2.68764 2.97387 3.14307 3.22284 3.24636 3.34215 3.61086 3.69323 4.01626 4.16287 4.20833 4.48468 4.67532 4.74134 4.89424 4.93341 4.97059 5.10856 5.13021 5.16452 5.24345 5.35242 5.43806 5.62873 5.89032 5.91520 6.00081 6.26731 6.33588 6.61084 6.73196 6.85682 6.95200 7.10559 7.49581 7.66482 7.68269 7.72174 8.06586 8.31330 8.59646 9.21334 10.70554 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031872 B = 0.002229 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.294617 B =12556.392895 C =12768.291016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.320 4.320 4 C 0.554 3.446 5 O -0.530 6.530 6 O -0.347 6.347 7 C 0.062 3.938 8 C 0.072 3.928 9 H 0.131 0.869 10 C 0.075 3.925 11 N -0.638 5.638 12 C 0.114 3.886 13 C 0.640 3.360 14 O -0.521 6.521 15 O -0.309 6.309 16 C 0.083 3.917 17 N -0.296 5.296 18 N -0.310 5.310 19 C 0.249 3.751 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.888 5.888 24 Si 0.909 3.091 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.186 0.814 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 25.480 0.625 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 C -0.333 4.333 4 C 0.402 3.598 5 O -0.421 6.421 6 O -0.264 6.264 7 C -0.013 4.013 8 C 0.016 3.984 9 H 0.149 0.851 10 C -0.048 4.048 11 N -0.387 5.387 12 C -0.027 4.027 13 C 0.394 3.606 14 O -0.405 6.405 15 O -0.219 6.219 16 C -0.105 4.105 17 N -0.115 5.115 18 N -0.086 5.086 19 C 0.133 3.867 20 C -0.579 4.579 21 H 0.085 0.915 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.736 3.264 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.203 0.797 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.963 24.013 -0.068 24.033 hybrid contribution -0.724 0.435 1.097 1.384 sum 0.239 24.448 1.028 24.471 Atomic orbital electron populations 1.20618 0.86531 1.04036 1.04182 1.21453 0.94972 0.86445 0.93630 1.18776 0.93855 0.89029 1.31660 1.20059 0.83240 0.84853 0.71637 1.90767 1.17866 1.84434 1.48986 1.86587 1.39736 1.14693 1.85342 1.23199 0.94364 0.79487 1.04213 1.23910 0.94039 0.93739 0.86687 0.85125 1.22745 1.01714 0.91837 0.88542 1.47952 1.55751 1.12977 1.22048 1.21519 1.02082 0.77753 1.01317 1.18620 0.78635 0.79430 0.83915 1.91047 1.50001 1.80270 1.19203 1.87474 1.68991 1.31393 1.33997 1.23953 0.96652 0.92126 0.97747 1.77239 0.98176 1.12359 1.23756 1.49446 1.02649 1.08324 1.48133 1.19929 0.96562 0.70631 0.99626 1.21270 1.47503 0.98252 0.90872 0.91536 1.24933 0.94418 0.95946 0.98399 1.69920 1.44380 1.07053 1.31226 0.86254 0.77964 0.78863 0.83351 1.19515 1.20542 1.20528 0.89471 0.88921 0.90416 0.90227 0.88548 0.88426 0.87990 0.89203 0.91467 0.91477 0.79703 0.92411 0.92249 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.56 36.00 0.34 -1.28 16 2 C 0.17 3.44 7.01 -81.59 -0.57 2.86 16 3 C -0.32 -5.89 6.13 -105.08 -0.64 -6.53 16 4 C 0.55 9.08 7.95 34.41 0.27 9.35 16 5 O -0.53 -9.13 14.64 -19.29 -0.28 -9.41 16 6 O -0.35 -4.70 10.07 -42.01 -0.42 -5.12 16 7 C 0.06 0.57 5.02 37.16 0.19 0.76 16 8 C 0.07 0.52 4.16 -26.16 -0.11 0.41 16 9 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 10 C 0.08 0.32 7.34 -3.15 -0.02 0.30 16 11 N -0.64 -4.79 3.36 -186.77 -0.63 -5.42 16 12 C 0.11 0.53 11.23 59.85 0.67 1.20 16 13 C 0.64 7.78 8.85 53.71 0.48 8.26 16 14 O -0.52 -8.36 17.31 -19.11 -0.33 -8.69 16 15 O -0.31 -3.72 10.79 -39.23 -0.42 -4.14 16 16 C 0.08 1.51 11.87 -16.97 -0.20 1.31 16 17 N -0.30 -6.42 12.50 30.87 0.39 -6.03 16 18 N -0.31 -6.91 3.56 -57.76 -0.21 -7.11 16 19 C 0.25 6.09 5.97 -5.19 -0.03 6.06 16 20 C -0.54 -14.28 9.39 -34.44 -0.32 -14.60 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 24 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.47 6.52 -51.93 -0.34 1.14 16 30 H 0.08 1.29 7.05 -51.93 -0.37 0.92 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.25 7.73 -51.93 -0.40 -0.15 16 34 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.09 0.54 7.53 -51.93 -0.39 0.15 16 36 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.19 2.68 8.06 -52.49 -0.42 2.26 16 39 H 0.06 1.39 7.02 -51.92 -0.36 1.02 16 40 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -34.46 361.45 -6.01 -40.47 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.21 Total: -1.72 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.05 Total: 9.77 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.29 Total: -42.04 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.46 Total: -27.36 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.46 -6.01 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892993033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.412 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds