Wall clock time and date at job start Tue Mar 31 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47313 * 2 1 4 4 N 1.27938 * 120.00031 * 94.99801 * 3 2 1 5 5 Si 1.86796 * 119.99815 * 275.00068 * 3 2 1 6 6 H 1.48508 * 109.47316 * 59.99715 * 5 3 2 7 7 H 1.48501 * 109.47299 * 179.97438 * 5 3 2 8 8 H 1.48505 * 109.47373 * 299.99781 * 5 3 2 9 9 C 1.50702 * 109.47245 * 119.99881 * 2 1 3 10 10 O 1.21283 * 120.00262 * 240.00295 * 9 2 1 11 11 N 1.34777 * 119.99928 * 59.72201 * 9 2 1 12 12 C 1.47025 * 125.65000 * 180.27553 * 11 9 2 13 13 C 1.54322 * 107.27199 * 181.02428 * 12 11 9 14 14 H 1.09001 * 110.71506 * 140.55598 * 13 12 11 15 15 N 1.46498 * 110.72335 * 263.82958 * 13 12 11 16 16 C 1.34774 * 119.99810 * 273.54936 * 15 13 12 17 17 O 1.21687 * 120.00367 * 359.97438 * 16 15 13 18 18 C 1.46722 * 119.99562 * 179.97438 * 16 15 13 19 19 O 1.35345 * 126.64841 * 359.68492 * 18 16 15 20 20 C 1.33668 * 107.68807 * 179.87293 * 19 18 16 21 21 N 1.30616 * 109.14735 * 0.40372 * 20 19 18 22 22 C 1.33692 * 109.00403 * 359.74631 * 21 20 19 23 23 C 1.50695 * 126.27771 * 179.97438 * 22 21 20 24 24 C 1.55156 * 102.94117 * 22.19643 * 13 12 11 25 25 H 1.09005 * 111.00556 * 82.57167 * 24 13 12 26 26 O 1.42899 * 111.00184 * 206.42008 * 24 13 12 27 27 C 1.47423 * 125.65109 * 359.97383 * 11 9 2 28 28 H 1.08996 * 109.46783 * 299.99678 * 1 2 3 29 29 H 1.08994 * 109.47175 * 60.00247 * 1 2 3 30 30 H 1.09001 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47131 * 239.99770 * 2 1 3 32 32 H 0.97005 * 119.99962 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.88256 * 300.44464 * 12 11 9 34 34 H 1.08998 * 109.87939 * 61.45228 * 12 11 9 35 35 H 0.96994 * 119.99728 * 93.54237 * 15 13 12 36 36 H 1.07994 * 125.41977 * 180.14825 * 20 19 18 37 37 H 1.08994 * 109.47288 * 270.02992 * 23 22 21 38 38 H 1.09002 * 109.46601 * 30.02749 * 23 22 21 39 39 H 1.08997 * 109.47265 * 150.02759 * 23 22 21 40 40 H 0.96704 * 113.99868 * 179.97438 * 26 24 13 41 41 H 1.09004 * 110.36802 * 274.74548 * 27 11 9 42 42 H 1.09004 * 110.36924 * 37.06499 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9917 1.1038 5 14 2.2108 2.3483 -1.6116 6 1 0.8884 2.4353 -2.2817 7 1 2.7192 3.7171 -1.3413 8 1 3.1660 1.6301 -2.4930 9 6 2.0324 -0.7104 1.2305 10 8 2.7296 -0.1210 2.0289 11 7 1.7022 -1.9991 1.4466 12 6 2.1164 -2.8075 2.6027 13 6 1.5250 -4.2198 2.4097 14 1 2.2382 -4.9825 2.7226 15 7 0.2627 -4.3575 3.1403 16 6 0.2713 -4.7250 4.4369 17 8 1.3274 -4.9429 5.0007 18 6 -0.9930 -4.8624 5.1687 19 8 -2.2368 -4.6491 4.6797 20 6 -3.1072 -4.8857 5.6662 21 7 -2.4517 -5.2270 6.7432 22 6 -1.1419 -5.2239 6.4750 23 6 -0.0334 -5.5579 7.4396 24 6 1.2836 -4.2892 0.8786 25 1 2.1990 -4.5558 0.3503 26 8 0.2302 -5.2032 0.5671 27 6 0.8607 -2.8298 0.5662 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 2.6597 2.9064 1.1038 33 1 3.2042 -2.8637 2.6451 34 1 1.7321 -2.3646 3.5215 35 1 -0.5791 -4.1841 2.6908 36 1 -4.1811 -4.8035 5.5866 37 1 0.2883 -4.6511 7.9516 38 1 -0.3945 -6.2800 8.1720 39 1 0.8076 -5.9844 6.8930 40 1 0.0428 -5.2798 -0.3785 41 1 -0.1940 -2.6801 0.7977 42 1 1.0574 -2.5939 -0.4797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962080995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:00 Heat of formation + Delta-G solvation = -54.923348 kcal Electronic energy + Delta-G solvation = -28340.418507 eV Core-core repulsion = 24210.320424 eV Total energy + Delta-G solvation = -4130.098082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.144 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -44.53239 -41.75292 -40.62377 -39.18440 -36.91676 -36.57774 -36.40033 -35.29723 -33.46469 -32.75016 -30.86143 -29.51358 -28.74243 -26.32480 -25.26729 -24.45694 -23.15248 -22.31195 -21.96452 -21.39220 -19.88232 -19.51096 -18.70235 -18.53614 -18.02106 -17.61123 -17.44705 -17.03340 -16.50934 -16.30078 -15.90812 -15.74398 -15.48171 -15.30699 -15.14194 -14.61599 -14.48889 -14.33467 -14.16689 -14.08993 -13.99192 -13.63478 -13.39785 -13.32432 -13.18367 -12.94704 -12.55123 -12.31410 -12.24940 -12.23284 -12.07129 -12.02910 -11.39642 -11.34846 -11.19782 -10.83485 -10.52623 -10.02265 -9.70801 -9.55458 -0.32955 0.92108 1.08731 1.31115 1.32884 1.46993 1.68974 1.73955 1.84463 1.87622 1.93411 2.06516 2.96469 3.09075 3.20642 3.39136 3.43476 3.59407 3.64199 3.89576 4.05805 4.12011 4.14775 4.21820 4.25223 4.32193 4.38327 4.53105 4.59176 4.61761 4.64667 4.73666 4.75348 4.80026 4.92625 4.95233 5.05103 5.15266 5.18850 5.24653 5.29752 6.13544 6.43991 6.48471 6.79308 6.90876 7.01530 7.25020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.025 4.025 4 N -0.628 5.628 5 Si 0.987 3.013 6 H -0.219 1.219 7 H -0.274 1.274 8 H -0.234 1.234 9 C 0.523 3.477 10 O -0.550 6.550 11 N -0.618 5.618 12 C 0.103 3.897 13 C 0.141 3.859 14 H 0.110 0.890 15 N -0.685 5.685 16 C 0.610 3.390 17 O -0.542 6.542 18 C -0.138 4.138 19 O -0.189 6.189 20 C 0.231 3.769 21 N -0.530 5.530 22 C 0.070 3.930 23 C -0.082 4.082 24 C 0.102 3.898 25 H 0.115 0.885 26 O -0.560 6.560 27 C 0.060 3.940 28 H 0.040 0.960 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.333 0.667 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.418 0.582 36 H 0.308 0.692 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.409 0.591 41 H 0.091 0.909 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -2.003 -11.594 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.272 4.272 4 N -0.241 5.241 5 Si 0.802 3.198 6 H -0.141 1.141 7 H -0.198 1.198 8 H -0.157 1.157 9 C 0.312 3.688 10 O -0.425 6.425 11 N -0.355 5.355 12 C -0.022 4.022 13 C 0.035 3.965 14 H 0.128 0.872 15 N -0.336 5.336 16 C 0.396 3.604 17 O -0.422 6.422 18 C -0.193 4.193 19 O -0.075 6.075 20 C 0.007 3.993 21 N -0.259 5.259 22 C -0.054 4.054 23 C -0.139 4.139 24 C 0.041 3.959 25 H 0.132 0.868 26 O -0.369 6.369 27 C -0.062 4.062 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.170 0.830 32 H 0.150 0.850 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.256 0.744 36 H 0.323 0.677 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.262 0.738 41 H 0.109 0.891 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.049 -1.799 -9.419 10.837 hybrid contribution 0.215 1.010 -0.785 1.297 sum -4.834 -0.789 -10.204 11.319 Atomic orbital electron populations 1.21902 0.89678 1.04965 1.03620 1.20871 0.99492 0.92370 0.97295 1.30590 0.93857 0.99390 1.03388 1.68519 1.07637 1.14852 1.33082 0.85025 0.83221 0.77559 0.74037 1.14102 1.19844 1.15676 1.20847 0.79853 0.79769 0.88322 1.90793 1.38721 1.64952 1.48036 1.48424 1.52196 1.10778 1.24132 1.22231 1.00144 0.90195 0.89627 1.22093 0.86371 0.95670 0.92343 0.87206 1.45451 1.10758 1.67953 1.09474 1.16395 0.85031 0.76909 0.82055 1.90872 1.30274 1.52344 1.68669 1.22661 0.84539 1.16337 0.95777 1.84490 1.14921 1.66840 1.41265 1.29590 0.99358 0.91688 0.78670 1.70405 1.04171 1.21429 1.29895 1.22365 0.93140 0.96880 0.92983 1.20403 0.93547 1.03061 0.96925 1.23162 0.92744 0.88130 0.91841 0.86777 1.86499 1.54565 1.62957 1.32907 1.23547 0.95887 0.89756 0.97020 0.94091 0.88446 0.88691 0.82993 0.84991 0.90743 0.93637 0.74424 0.67699 0.89737 0.89540 0.89414 0.73810 0.89138 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.15 8.92 71.98 0.64 1.79 16 2 C -0.08 0.29 2.00 -12.29 -0.02 0.26 16 3 C -0.02 -0.01 4.75 88.68 0.42 0.41 16 4 N -0.63 -5.15 11.22 24.11 0.27 -4.88 16 5 Si 0.99 -4.79 29.29 68.60 2.01 -2.79 16 6 H -0.22 1.60 7.11 99.48 0.71 2.31 16 7 H -0.27 0.16 7.11 99.48 0.71 0.87 16 8 H -0.23 1.23 7.11 99.48 0.71 1.94 16 9 C 0.52 2.55 7.16 87.66 0.63 3.17 16 10 O -0.55 -9.07 14.65 -3.04 -0.04 -9.11 16 11 N -0.62 0.61 3.32 -811.35 -2.69 -2.08 16 12 C 0.10 0.29 6.60 86.73 0.57 0.86 16 13 C 0.14 -0.25 3.13 46.18 0.14 -0.10 16 14 H 0.11 0.04 7.70 -2.39 -0.02 0.02 16 15 N -0.69 -0.32 4.78 -440.84 -2.11 -2.43 16 16 C 0.61 4.30 7.79 86.46 0.67 4.97 16 17 O -0.54 -6.79 14.52 -4.31 -0.06 -6.85 16 18 C -0.14 -0.89 7.18 24.05 0.17 -0.71 16 19 O -0.19 -0.21 10.57 -7.13 -0.08 -0.28 16 20 C 0.23 -0.47 13.21 130.42 1.72 1.25 16 21 N -0.53 -3.25 11.26 -303.13 -3.41 -6.66 16 22 C 0.07 0.57 7.16 41.83 0.30 0.87 16 23 C -0.08 -0.53 9.87 71.23 0.70 0.18 16 24 C 0.10 -1.04 4.23 32.06 0.14 -0.90 16 25 H 0.11 -1.52 8.14 -2.38 -0.02 -1.54 16 26 O -0.56 6.14 12.63 -148.98 -1.88 4.26 16 27 C 0.06 -0.67 4.84 86.93 0.42 -0.25 16 28 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.10 -1.19 7.94 -2.39 -0.02 -1.21 16 30 H 0.09 -1.20 4.96 -2.39 -0.01 -1.21 16 31 H 0.15 -1.86 7.56 -2.38 -0.02 -1.88 16 32 H 0.33 1.81 8.23 -92.70 -0.76 1.04 16 33 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.05 0.43 8.05 -2.39 -0.02 0.41 16 35 H 0.42 -1.20 7.99 -92.71 -0.74 -1.94 16 36 H 0.31 -4.48 8.06 -2.91 -0.02 -4.50 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.09 0.70 6.47 -2.39 -0.02 0.68 16 40 H 0.41 -8.23 9.12 -74.05 -0.68 -8.91 16 41 H 0.09 -1.12 7.07 -2.38 -0.02 -1.14 16 42 H 0.13 -2.25 7.36 -2.38 -0.02 -2.27 16 Total: 0.00 -33.52 351.65 -1.80 -35.32 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -0.32 Total: -16.30 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.51 Total: 11.79 kcal Atomic # 7 Polarization: -8.11 SS G_CDS: -7.94 Total: -16.05 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -2.06 Total: -11.98 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: 2.01 Total: -2.79 kcal Total: -33.52 -1.80 -35.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962080995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds