Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.46957 * 269.99998 * 3 2 1 5 5 H 1.48504 * 109.47174 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.46983 * 149.99973 * 3 2 1 7 7 C 1.38812 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99185 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34772 * 120.00151 * 84.99440 * 17 15 14 19 19 O 1.21583 * 120.00246 * 0.02562 * 18 17 15 20 20 C 1.47625 * 120.00309 * 179.97438 * 18 17 15 21 21 N 1.33056 * 120.52358 * 0.02562 * 20 18 17 22 22 N 1.28717 * 120.36516 * 179.97438 * 21 20 18 23 23 C 1.32949 * 121.54998 * 359.97438 * 22 21 20 24 24 O 1.35300 * 119.46400 * 180.02562 * 23 22 21 25 25 N 1.32459 * 121.06520 * 0.02601 * 23 22 21 26 26 C 1.32871 * 119.50957 * 359.68616 * 25 23 22 27 27 O 1.35295 * 120.71218 * 180.29438 * 26 25 23 28 28 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 29 29 H 0.96997 * 120.00544 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 32 32 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 33 33 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 35 35 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 36 36 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 37 37 H 0.96994 * 120.00122 * 265.00254 * 17 15 14 38 38 H 0.96701 * 113.99720 * 90.00389 * 24 23 22 39 39 H 0.96699 * 114.00069 * 270.25436 * 27 26 25 40 40 H 1.08996 * 109.47853 * 300.00060 * 28 10 9 41 41 H 1.09002 * 109.47153 * 60.00089 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5651 -3.2062 -0.5888 12 6 4.2579 -2.9755 1.4380 13 6 5.0224 -4.3008 1.4380 14 6 6.4097 -4.0892 0.8288 15 6 6.2642 -3.5843 -0.6082 16 1 5.7167 -4.3196 -1.1979 17 7 7.5926 -3.3822 -1.1918 18 6 8.2443 -4.4170 -1.7583 19 8 7.7295 -5.5181 -1.7856 20 6 9.5827 -4.2133 -2.3469 21 7 10.1557 -3.0127 -2.3234 22 7 11.3230 -2.8386 -2.8371 23 6 11.9906 -3.8398 -3.4023 24 8 13.2155 -3.6094 -3.9290 25 7 11.4760 -5.0590 -3.4583 26 6 10.2759 -5.2875 -2.9358 27 8 9.7297 -6.5247 -2.9742 28 6 5.4996 -2.2585 -0.6080 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3619 0.0014 31 1 4.8049 -2.2401 2.0278 32 1 3.2694 -3.1267 1.8719 33 1 5.1258 -4.6607 2.4616 34 1 4.4749 -5.0361 0.8482 35 1 6.9572 -3.3539 1.4185 36 1 6.9543 -5.0334 0.8283 37 1 8.0033 -2.5038 -1.1704 38 1 13.9423 -3.7348 -3.3036 39 1 9.1996 -6.6962 -3.7645 40 1 5.3960 -1.8988 -1.6317 41 1 6.0467 -1.5230 -0.0182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981201328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -56.555656 kcal Electronic energy + Delta-G solvation = -26931.260857 eV Core-core repulsion = 22847.040483 eV Total energy + Delta-G solvation = -4084.220374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.36939 -41.13374 -39.73163 -39.05755 -38.84736 -36.35743 -35.63595 -34.88971 -33.39631 -33.05751 -30.74854 -29.70562 -27.44362 -26.28610 -25.38837 -23.65760 -23.03095 -21.79215 -21.20028 -21.13700 -20.72702 -19.78674 -19.67385 -18.92824 -17.63287 -17.33500 -16.94612 -16.55216 -16.26244 -16.05841 -15.39304 -15.27732 -15.18457 -14.96254 -14.80018 -14.46612 -14.23763 -13.97955 -13.73806 -13.62545 -13.48410 -13.00145 -12.90372 -12.86266 -12.74867 -12.34353 -12.17204 -12.01355 -11.78359 -11.65815 -11.60913 -11.42242 -11.31246 -11.12123 -10.89109 -10.72408 -10.15523 -9.27624 -7.98621 -5.31901 -1.28541 -1.00764 1.21073 1.32174 1.40887 1.44585 1.51824 1.68551 1.77169 2.07178 2.41096 2.52093 3.21641 3.27647 3.32641 3.47555 3.65608 3.86389 4.04112 4.12598 4.21799 4.30600 4.39232 4.53233 4.59511 4.66198 4.78521 4.97750 5.11522 5.17871 5.18048 5.24288 5.36232 5.38324 5.53213 5.64492 5.82120 6.16590 6.18755 6.25445 6.28616 6.80793 6.92576 7.12267 7.88324 8.07726 9.23040 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019416 B = 0.002649 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.754677 B =10567.484661 C =11470.830157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.225 4.225 8 H 0.054 0.946 9 N -0.751 5.751 10 C 0.181 3.819 11 H 0.040 0.960 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.118 4.118 15 C 0.158 3.842 16 H 0.083 0.917 17 N -0.691 5.691 18 C 0.584 3.416 19 O -0.530 6.530 20 C -0.058 4.058 21 N -0.112 5.112 22 N -0.296 5.296 23 C 0.491 3.509 24 O -0.447 6.447 25 N -0.518 5.518 26 C 0.430 3.570 27 O -0.449 6.449 28 C -0.123 4.123 29 H 0.256 0.744 30 H 0.366 0.634 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.418 0.582 38 H 0.446 0.554 39 H 0.441 0.559 40 H 0.071 0.929 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.102 -10.208 -4.596 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.171 1.171 7 C -0.356 4.356 8 H 0.073 0.927 9 N -0.394 5.394 10 C 0.072 3.928 11 H 0.059 0.941 12 C -0.170 4.170 13 C -0.145 4.145 14 C -0.157 4.157 15 C 0.053 3.947 16 H 0.101 0.899 17 N -0.341 5.341 18 C 0.365 3.635 19 O -0.405 6.405 20 C -0.211 4.211 21 N 0.029 4.971 22 N -0.159 5.159 23 C 0.187 3.813 24 O -0.254 6.254 25 N -0.262 5.262 26 C 0.232 3.768 27 O -0.259 6.259 28 C -0.161 4.161 29 H 0.065 0.935 30 H 0.200 0.800 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.256 0.744 38 H 0.313 0.687 39 H 0.309 0.691 40 H 0.090 0.910 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 29.067 -10.208 -4.682 31.161 hybrid contribution -0.257 0.549 -0.141 0.622 sum 28.809 -9.660 -4.823 30.766 Atomic orbital electron populations 1.69890 1.07252 1.26567 1.60077 1.25525 0.96098 1.01354 1.02964 0.85393 0.78764 0.79478 0.78023 1.20545 1.22766 1.17140 1.19003 0.82709 0.93246 1.40633 0.92749 1.42757 1.02340 1.03956 1.90298 1.20281 0.90872 0.87029 0.94571 0.94136 1.22106 0.99300 0.97257 0.98368 1.21399 0.95041 0.96630 1.01418 1.21845 0.97520 1.01698 0.94609 1.20928 0.81574 0.97473 0.94723 0.89894 1.45855 1.18711 1.12579 1.56988 1.17079 0.82807 0.84971 0.78607 1.90877 1.66809 1.24349 1.58485 1.23892 0.99173 0.92575 1.05455 1.73925 1.01067 1.17458 1.04684 1.73869 1.03008 1.28807 1.10244 1.21968 0.90311 0.83669 0.85372 1.84671 1.11495 1.89454 1.39775 1.68324 1.13619 1.24230 1.19990 1.19918 0.85862 0.85638 0.85367 1.84636 1.68126 1.24522 1.48660 1.21972 0.95197 0.96819 1.02156 0.93501 0.80041 0.92037 0.94403 0.90607 0.92233 0.90478 0.91499 0.74429 0.68654 0.69099 0.91012 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.21 13.97 21.65 0.30 -62.91 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.96 44.69 27.74 68.60 1.90 46.59 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 7 C -0.22 -12.55 10.41 84.03 0.87 -11.68 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.75 -33.27 4.92 -322.94 -1.59 -34.86 16 10 C 0.18 6.29 2.77 44.99 0.12 6.41 16 11 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 12 C -0.13 -4.10 5.50 30.60 0.17 -3.93 16 13 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 14 C -0.12 -2.49 5.49 30.60 0.17 -2.32 16 15 C 0.16 3.49 2.46 45.01 0.11 3.60 16 16 H 0.08 2.09 7.57 -2.39 -0.02 2.07 16 17 N -0.69 -13.02 5.07 -445.54 -2.26 -15.28 16 18 C 0.58 11.97 7.77 86.72 0.67 12.64 16 19 O -0.53 -13.22 14.93 16.46 0.25 -12.97 16 20 C -0.06 -1.04 6.85 42.05 0.29 -0.75 16 21 N -0.11 -2.05 10.88 -48.09 -0.52 -2.57 16 22 N -0.30 -5.27 11.60 -174.22 -2.02 -7.29 16 23 C 0.49 7.48 8.81 180.33 1.59 9.07 16 24 O -0.45 -4.36 13.63 -85.86 -1.17 -5.53 16 25 N -0.52 -8.58 10.58 -424.96 -4.49 -13.08 16 26 C 0.43 7.19 7.85 85.15 0.67 7.86 16 27 O -0.45 -6.61 11.76 -65.38 -0.77 -7.38 16 28 C -0.12 -3.14 4.86 30.61 0.15 -2.99 16 29 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.37 15.38 5.66 -92.71 -0.52 14.85 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.42 6.61 7.97 -92.71 -0.74 5.87 16 38 H 0.45 -0.80 9.06 -74.06 -0.67 -1.47 16 39 H 0.44 2.57 9.06 -74.06 -0.67 1.90 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -76.25 348.90 -6.44 -82.69 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -1.53 Total: 20.57 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.46 Total: 12.00 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -10.58 Total: -135.97 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.69 Total: -25.88 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -76.25 -6.44 -82.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981201328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.137 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds