Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48499 * 109.47025 * 354.97143 * 3 2 1 5 5 H 1.48499 * 109.47160 * 114.97228 * 3 2 1 6 6 H 1.48500 * 109.46957 * 234.97298 * 3 2 1 7 7 C 1.38816 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99957 * 354.46116 * 7 2 1 9 9 N 1.36938 * 120.00205 * 174.45687 * 7 2 1 10 10 C 1.47213 * 135.96509 * 7.16670 * 9 7 2 11 11 C 1.52913 * 87.68505 * 153.67025 * 10 9 7 12 12 C 1.47222 * 135.96802 * 187.53840 * 9 7 2 13 13 C 1.53329 * 115.72878 * 270.12764 * 11 10 9 14 14 C 1.55031 * 103.78499 * 229.63309 * 13 11 10 15 15 H 1.08995 * 110.86951 * 139.01551 * 14 13 11 16 16 N 1.46496 * 110.86924 * 262.48661 * 14 13 11 17 17 C 1.34774 * 120.00365 * 204.99584 * 16 14 13 18 18 O 1.21286 * 119.99591 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.46504 * 109.47126 * 180.02562 * 19 17 16 21 21 C 1.36609 * 127.11637 * 264.68829 * 20 19 17 22 22 N 1.30329 * 107.27470 * 179.87106 * 21 20 19 23 23 N 1.28529 * 109.99954 * 0.39880 * 22 21 20 24 24 C 1.31036 * 109.85801 * 359.74680 * 23 22 21 25 25 O 1.35536 * 126.44559 * 179.97438 * 24 23 22 26 26 C 1.55062 * 102.12886 * 20.85098 * 14 13 11 27 27 O 1.42831 * 115.82026 * 141.74301 * 11 10 9 28 28 H 0.97004 * 120.00108 * 174.85744 * 1 2 3 29 29 H 1.09000 * 113.50445 * 268.35433 * 10 9 7 30 30 H 1.09004 * 113.50076 * 38.90017 * 10 9 7 31 31 H 1.09000 * 113.49877 * 321.10679 * 12 9 7 32 32 H 1.08999 * 113.50409 * 91.58589 * 12 9 7 33 33 H 1.08996 * 110.56372 * 348.20543 * 13 11 10 34 34 H 1.09002 * 110.56344 * 111.05878 * 13 11 10 35 35 H 0.97002 * 120.00393 * 25.00465 * 16 14 13 36 36 H 1.09001 * 109.47308 * 299.99951 * 19 17 16 37 37 H 1.08996 * 109.46967 * 60.00565 * 19 17 16 38 38 H 1.07994 * 126.36072 * 0.02562 * 21 20 19 39 39 H 0.96703 * 113.99488 * 270.02470 * 25 24 23 40 40 H 1.09003 * 110.58038 * 82.03122 * 26 14 13 41 41 H 1.09003 * 110.58371 * 204.93561 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2899 2.7437 -0.1227 5 1 3.0096 1.7508 1.2692 6 1 3.1936 1.6445 -1.1465 7 6 2.0103 -1.2022 0.0005 8 1 1.4741 -2.1353 0.0912 9 7 3.3748 -1.2050 -0.1140 10 6 4.4381 -0.1869 -0.1250 11 6 5.3901 -1.2649 0.3946 12 6 4.4204 -2.2270 -0.2867 13 6 5.4846 -1.3905 1.9198 14 6 7.0099 -1.3835 2.1972 15 1 7.2419 -0.7819 3.0760 16 7 7.5183 -2.7485 2.3530 17 6 8.6378 -2.9731 3.0691 18 8 9.2241 -2.0450 3.5849 19 6 9.1611 -4.3772 3.2289 20 7 10.3783 -4.3549 4.0441 21 6 11.6689 -4.3216 3.5976 22 7 12.4413 -4.3086 4.6473 23 7 11.7296 -4.3396 5.7171 24 6 10.4574 -4.3689 5.4048 25 8 9.4161 -4.4066 6.2716 26 6 7.5718 -0.7233 0.9116 27 8 6.7157 -1.2327 -0.1364 28 1 -0.4850 -0.8367 -0.0753 29 1 4.6886 0.1693 -1.1242 30 1 4.2702 0.6246 0.5831 31 1 4.2374 -3.1369 0.2848 32 1 4.6653 -2.4263 -1.3300 33 1 5.0035 -0.5411 2.4044 34 1 5.0388 -2.3270 2.2552 35 1 7.0494 -3.4908 1.9407 36 1 8.4069 -4.9924 3.7196 37 1 9.3882 -4.7942 2.2478 38 1 11.9895 -4.3062 2.5665 39 1 9.1372 -5.3006 6.5126 40 1 7.4967 0.3624 0.9741 41 1 8.6050 -1.0279 0.7445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053780416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = 15.322016 kcal Electronic energy + Delta-G solvation = -27355.960739 eV Core-core repulsion = 23274.857215 eV Total energy + Delta-G solvation = -4081.103525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.06383 -41.90050 -40.59679 -38.68025 -38.24238 -35.90333 -35.62050 -34.52317 -32.09112 -30.91302 -30.33109 -29.05131 -27.38545 -27.13524 -24.03786 -23.48195 -23.38662 -22.71986 -21.73036 -20.77626 -19.95500 -19.51847 -18.96329 -18.18953 -17.60285 -17.47510 -17.03739 -16.61802 -16.51364 -16.25906 -16.13923 -15.97857 -15.38478 -15.29991 -15.13185 -14.74915 -14.35502 -13.92596 -13.56617 -13.41872 -13.36648 -12.95253 -12.81112 -12.74925 -12.70143 -12.39393 -12.29395 -12.07070 -11.97141 -11.69606 -11.32034 -11.29677 -11.07524 -10.87384 -10.55952 -10.27719 -10.08409 -9.27551 -8.62765 -5.50603 0.56136 1.03317 1.36308 1.38080 1.45528 1.64043 1.74301 2.02076 2.51152 2.65890 2.76997 2.98913 3.21495 3.39769 3.42340 3.49563 3.59267 3.61427 3.77960 3.90117 4.10980 4.24370 4.27956 4.45522 4.58004 4.61771 4.63234 4.63964 4.68951 4.74654 4.78445 4.89651 4.90721 4.97072 5.14157 5.31143 5.59071 5.92291 5.94465 6.35424 6.47348 6.66919 7.04855 7.29034 7.58766 8.22160 8.89115 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.002575 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.340604 B =10870.926019 C =11077.622054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.082 4.082 3 Si 1.102 2.898 4 H -0.306 1.306 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.284 4.284 8 H 0.060 0.940 9 N -0.648 5.648 10 C 0.072 3.928 11 C 0.084 3.916 12 C 0.133 3.867 13 C -0.116 4.116 14 C 0.121 3.879 15 H 0.102 0.898 16 N -0.695 5.695 17 C 0.499 3.501 18 O -0.575 6.575 19 C 0.091 3.909 20 N -0.471 5.471 21 C 0.190 3.810 22 N -0.329 5.329 23 N -0.338 5.338 24 C 0.361 3.639 25 O -0.444 6.444 26 C 0.036 3.964 27 O -0.360 6.360 28 H 0.249 0.751 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.421 0.579 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.269 0.731 39 H 0.429 0.571 40 H 0.075 0.925 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.108 -13.403 4.655 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.274 4.274 3 Si 0.929 3.071 4 H -0.235 1.235 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.411 4.411 8 H 0.078 0.922 9 N -0.379 5.379 10 C -0.053 4.053 11 C 0.043 3.957 12 C 0.007 3.993 13 C -0.154 4.154 14 C 0.015 3.985 15 H 0.120 0.880 16 N -0.348 5.348 17 C 0.285 3.715 18 O -0.453 6.453 19 C -0.034 4.034 20 N -0.174 5.174 21 C -0.098 4.098 22 N -0.169 5.169 23 N -0.188 5.188 24 C 0.055 3.945 25 O -0.247 6.247 26 C -0.041 4.041 27 O -0.278 6.278 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.260 0.740 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.285 0.715 39 H 0.291 0.709 40 H 0.093 0.907 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.305 -10.604 5.835 25.378 hybrid contribution -2.234 -2.099 -0.975 3.216 sum 20.072 -12.703 4.860 24.246 Atomic orbital electron populations 1.71015 1.06739 1.28567 1.55190 1.26901 0.96492 1.04370 0.99682 0.83346 0.73310 0.72443 0.78050 1.23459 1.19407 1.19290 1.19973 0.79919 0.94640 1.46580 0.92249 1.45770 1.00701 1.05247 1.86160 1.23422 0.88014 0.94660 0.99250 1.23163 0.82172 0.96594 0.93757 1.22523 0.84758 0.93250 0.98736 1.22679 0.94808 1.05365 0.92528 1.22354 0.92359 0.84541 0.99216 0.87975 1.45696 1.26819 1.09434 1.52839 1.21249 0.80614 0.92019 0.77668 1.90826 1.58889 1.46532 1.49094 1.22122 0.86025 0.94295 1.00942 1.46597 1.09122 1.55234 1.06459 1.27272 0.78434 1.01101 1.02974 1.74110 1.27374 1.20132 0.95241 1.74490 0.99755 1.22617 1.21916 1.22182 0.88831 1.03127 0.80375 1.84936 1.45019 1.36171 1.58555 1.24117 0.95442 0.98850 0.85707 1.88783 1.16645 1.84951 1.37386 0.94227 0.93386 0.92983 0.91042 0.93242 0.89633 0.87886 0.74050 0.82216 0.80023 0.71534 0.70941 0.90695 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.21 13.70 21.65 0.30 -60.92 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 1.10 52.32 25.17 68.60 1.73 54.04 16 4 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 5 H -0.27 -11.45 6.49 99.48 0.65 -10.80 16 6 H -0.27 -11.72 6.18 99.48 0.62 -11.10 16 7 C -0.28 -15.64 11.08 84.03 0.93 -14.70 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.65 -29.08 3.65 -739.24 -2.70 -31.78 16 10 C 0.07 2.76 5.20 83.48 0.43 3.19 16 11 C 0.08 2.42 1.66 -10.83 -0.02 2.40 16 12 C 0.13 4.42 8.20 83.39 0.68 5.10 16 13 C -0.12 -2.68 6.11 31.40 0.19 -2.48 16 14 C 0.12 2.23 3.51 46.39 0.16 2.39 16 15 H 0.10 2.13 7.54 -2.39 -0.02 2.11 16 16 N -0.69 -8.15 5.15 -435.93 -2.25 -10.40 16 17 C 0.50 6.71 7.90 87.66 0.69 7.40 16 18 O -0.57 -14.47 16.07 -3.05 -0.05 -14.52 16 19 C 0.09 0.34 6.69 85.63 0.57 0.91 16 20 N -0.47 -5.92 2.29 -647.66 -1.48 -7.40 16 21 C 0.19 2.59 12.80 179.81 2.30 4.89 16 22 N -0.33 -7.81 12.18 -59.40 -0.72 -8.53 16 23 N -0.34 -8.90 12.22 -173.67 -2.12 -11.02 16 24 C 0.36 6.99 9.22 179.70 1.66 8.64 16 25 O -0.44 -6.57 13.62 -88.40 -1.20 -7.77 16 26 C 0.04 0.72 7.42 72.69 0.54 1.26 16 27 O -0.36 -9.11 11.32 -148.98 -1.69 -10.80 16 28 H 0.25 15.66 8.73 -92.71 -0.81 14.85 16 29 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 30 H 0.05 2.04 4.57 -2.39 -0.01 2.03 16 31 H 0.07 2.07 7.91 -2.39 -0.02 2.05 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.24 7.82 -2.39 -0.02 2.23 16 34 H 0.10 2.13 7.69 -2.39 -0.02 2.11 16 35 H 0.42 2.57 8.62 -92.71 -0.80 1.77 16 36 H 0.16 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.18 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.43 0.90 9.06 -74.06 -0.67 0.23 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -91.61 346.85 -2.14 -93.75 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -0.56 Total: 0.64 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 8.62 Total: 14.71 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -8.98 Total: -130.05 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -2.94 Total: -33.09 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 1.73 Total: 54.04 kcal Total: -91.61 -2.14 -93.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053780416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.069 kcal (2) G-P(sol) polarization free energy of solvation -91.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds