Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 H 1.08995 * 109.86994 * 303.78093 * 3 2 1 5 5 C 1.54326 * 109.87938 * 182.60527 * 3 2 1 6 6 H 1.08991 * 110.72391 * 336.75053 * 5 3 2 7 7 N 1.46497 * 110.72048 * 100.02819 * 5 3 2 8 8 C 1.34769 * 120.00119 * 204.99481 * 7 5 3 9 9 O 1.21579 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.47624 * 120.00241 * 179.97438 * 8 7 5 11 11 N 1.33059 * 120.52575 * 0.02562 * 10 8 7 12 12 N 1.28713 * 120.36414 * 179.97438 * 11 10 8 13 13 C 1.32947 * 121.55201 * 0.02562 * 12 11 10 14 14 O 1.35302 * 119.46835 * 179.97438 * 13 12 11 15 15 N 1.32465 * 121.06509 * 359.97001 * 13 12 11 16 16 C 1.32864 * 119.51097 * 359.78656 * 15 13 12 17 17 O 1.35287 * 120.71889 * 180.23413 * 16 15 13 18 18 C 1.55163 * 102.93823 * 218.38979 * 5 3 2 19 19 C 1.54686 * 101.67816 * 35.33670 * 18 5 3 20 20 N 1.47020 * 109.88265 * 64.79359 * 3 2 1 21 21 C 1.36929 * 125.65296 * 298.32587 * 20 3 2 22 22 H 1.08000 * 119.99882 * 336.98432 * 21 20 3 23 23 C 1.38806 * 120.00584 * 156.98736 * 21 20 3 24 24 N 1.31625 * 119.99812 * 336.23605 * 23 21 20 25 25 Si 1.86797 * 120.00398 * 156.51201 * 23 21 20 26 26 H 1.48503 * 109.46809 * 269.72373 * 25 23 21 27 27 H 1.48491 * 109.47190 * 29.72297 * 25 23 21 28 28 H 1.48496 * 109.47439 * 149.72708 * 25 23 21 29 29 H 1.09005 * 109.46579 * 292.01692 * 1 2 3 30 30 H 1.08998 * 109.47101 * 52.01069 * 1 2 3 31 31 H 1.09004 * 109.47136 * 172.01774 * 1 2 3 32 32 H 1.09002 * 109.47144 * 239.99960 * 2 1 3 33 33 H 1.09005 * 109.47481 * 119.99759 * 2 1 3 34 34 H 0.97001 * 120.00164 * 24.99455 * 7 5 3 35 35 H 0.96701 * 113.99860 * 89.99750 * 14 13 12 36 36 H 0.96704 * 113.99773 * 270.23380 * 17 16 15 37 37 H 1.08999 * 111.00240 * 153.58293 * 18 5 3 38 38 H 1.09004 * 111.00341 * 277.38899 * 18 5 3 39 39 H 1.09000 * 110.39150 * 204.36695 * 19 18 5 40 40 H 1.08996 * 110.23743 * 82.11455 * 19 18 5 41 41 H 0.96998 * 119.99973 * 353.85140 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9818 -0.8520 5 6 3.5818 1.4540 -0.0660 6 1 3.9907 0.5143 0.3050 7 7 4.0402 1.7169 -1.4323 8 6 5.2554 1.2902 -1.8293 9 8 5.9710 0.6866 -1.0535 10 6 5.7171 1.5545 -3.2063 11 7 4.9423 2.2136 -4.0641 12 7 5.3482 2.4428 -5.2638 13 6 6.5412 2.0341 -5.6846 14 8 6.9251 2.2976 -6.9550 15 7 7.3602 1.3732 -4.8802 16 6 6.9859 1.1178 -3.6312 17 8 7.8049 0.4488 -2.7875 18 6 3.9611 2.6275 0.8756 19 6 2.8734 2.5151 1.9697 20 7 1.6516 2.1102 1.2509 21 6 0.3676 2.3255 1.6753 22 1 -0.4409 2.3485 0.9597 23 6 0.1052 2.5142 3.0252 24 7 0.9377 2.0435 3.9296 25 14 -1.4334 3.4293 3.5587 26 1 -1.1318 4.8787 3.6752 27 1 -2.5047 3.2261 2.5507 28 1 -1.8867 2.9108 4.8743 29 1 -0.3633 0.3853 0.9528 30 1 -0.3633 0.6325 -0.8099 31 1 -0.3633 -1.0177 -0.1427 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4691 2.1981 -2.0514 35 1 7.3921 3.1381 -7.0585 36 1 7.6910 -0.5113 -2.8075 37 1 4.9567 2.4851 1.2958 38 1 3.8916 3.5833 0.3562 39 1 2.7247 3.4784 2.4578 40 1 3.1518 1.7571 2.7017 41 1 1.6860 1.4892 3.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087641818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -3.151243 kcal Electronic energy + Delta-G solvation = -27622.922942 eV Core-core repulsion = 23541.018357 eV Total energy + Delta-G solvation = -4081.904585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.57553 -40.00630 -38.84654 -38.17111 -37.87065 -34.88882 -34.39132 -32.74817 -32.52080 -31.67296 -28.69672 -27.20583 -26.46588 -25.49519 -24.40493 -22.18356 -21.49884 -20.52766 -20.47202 -20.06674 -19.63774 -18.99743 -18.01654 -17.42555 -16.86353 -16.30059 -16.18309 -15.07111 -14.93344 -14.44434 -14.30986 -13.97326 -13.62365 -13.51776 -13.25363 -13.13824 -12.93089 -12.87362 -12.46506 -12.21572 -12.13931 -11.99310 -11.69760 -11.15022 -10.99829 -10.78921 -10.55607 -10.52476 -10.37056 -10.18117 -10.15304 -10.07323 -9.92711 -9.86197 -9.42521 -8.91805 -8.44282 -6.95223 -6.05802 -3.21919 -0.50860 -0.21892 1.95643 2.14291 2.48951 2.70316 2.96181 3.27859 3.49963 3.51575 3.67628 3.91986 4.14004 4.42674 4.56714 4.87270 5.05996 5.23762 5.31900 5.37716 5.62190 5.87315 5.89519 5.93288 5.96565 6.10488 6.19677 6.28648 6.41880 6.53928 6.55941 6.60815 6.69272 6.71305 6.92299 6.98132 7.05491 7.30600 7.33378 7.62109 7.81666 7.94987 8.47068 9.00362 9.77938 10.33737 11.23036 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.002877 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.638675 B = 9729.807280 C =10043.311792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.040 0.960 5 C 0.133 3.867 6 H 0.100 0.900 7 N -0.688 5.688 8 C 0.577 3.423 9 O -0.510 6.510 10 C -0.048 4.048 11 N -0.111 5.111 12 N -0.281 5.281 13 C 0.479 3.521 14 O -0.447 6.447 15 N -0.510 5.510 16 C 0.422 3.578 17 O -0.440 6.440 18 C -0.146 4.146 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.324 4.324 22 H 0.067 0.933 23 C -0.025 4.025 24 N -0.918 5.918 25 Si 1.068 2.932 26 H -0.294 1.294 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.410 0.590 35 H 0.422 0.578 36 H 0.423 0.577 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -1.212 -17.339 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.058 0.942 5 C 0.029 3.971 6 H 0.118 0.882 7 N -0.338 5.338 8 C 0.358 3.642 9 O -0.384 6.384 10 C -0.201 4.201 11 N 0.030 4.970 12 N -0.143 5.143 13 C 0.174 3.826 14 O -0.250 6.250 15 N -0.253 5.253 16 C 0.224 3.776 17 O -0.248 6.248 18 C -0.185 4.185 19 C 0.018 3.982 20 N -0.317 5.317 21 C -0.452 4.452 22 H 0.085 0.915 23 C -0.227 4.227 24 N -0.559 5.559 25 Si 0.898 3.102 26 H -0.221 1.221 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.246 0.754 35 H 0.285 0.715 36 H 0.287 0.713 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.655 -0.546 -16.151 19.357 hybrid contribution 1.387 -0.868 -1.423 2.169 sum 12.042 -1.415 -17.574 21.351 Atomic orbital electron populations 1.21915 0.95553 0.98938 1.04320 1.21891 0.97224 0.97475 0.99653 1.21187 0.89252 0.92524 0.92096 0.94226 1.22275 0.95793 0.99669 0.79412 0.88154 1.45929 1.16489 1.56252 1.15166 1.17001 0.82770 0.80603 0.83832 1.90874 1.54481 1.40657 1.52396 1.24195 0.93546 1.03043 0.99302 1.74017 1.24408 1.03045 0.95506 1.73882 1.14521 1.18097 1.07828 1.21895 0.86737 0.88241 0.85699 1.84698 1.77365 1.45365 1.17528 1.68202 1.36593 1.16790 1.03719 1.19910 0.84604 0.88445 0.84673 1.84684 1.58729 1.25157 1.56244 1.23200 0.99627 0.97629 0.98064 1.21517 0.85174 0.98818 0.92662 1.44492 1.01968 1.64858 1.20378 1.19702 0.83213 1.49029 0.93255 0.91530 1.25792 1.04299 1.00933 0.91717 1.70737 1.17325 1.32530 1.35320 0.83460 0.74878 0.76345 0.75505 1.22111 1.21835 1.21660 0.88866 0.94187 0.95199 0.94278 0.92519 0.75392 0.71550 0.71267 0.91334 0.91411 0.92881 0.95119 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.89 37.16 0.33 -2.52 16 2 C -0.12 -2.27 5.47 -26.73 -0.15 -2.41 16 3 C 0.16 2.98 3.01 -66.95 -0.20 2.78 16 4 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 5 C 0.13 2.21 2.85 -66.09 -0.19 2.02 16 6 H 0.10 1.76 7.26 -51.93 -0.38 1.38 16 7 N -0.69 -9.54 5.17 -53.04 -0.27 -9.81 16 8 C 0.58 7.84 7.80 -12.43 -0.10 7.74 16 9 O -0.51 -7.97 14.91 -16.07 -0.24 -8.21 16 10 C -0.05 -0.56 6.85 -82.55 -0.57 -1.12 16 11 N -0.11 -1.30 10.88 33.45 0.36 -0.94 16 12 N -0.28 -3.14 11.60 29.21 0.34 -2.80 16 13 C 0.48 4.68 8.81 -90.58 -0.80 3.88 16 14 O -0.45 -3.12 13.63 -17.60 -0.24 -3.36 16 15 N -0.51 -5.31 10.57 -14.33 -0.15 -5.46 16 16 C 0.42 4.49 7.85 -16.15 -0.13 4.36 16 17 O -0.44 -4.22 11.76 -38.92 -0.46 -4.68 16 18 C -0.15 -2.58 6.76 -24.70 -0.17 -2.74 16 19 C 0.14 3.18 5.39 -2.65 -0.01 3.16 16 20 N -0.59 -13.71 2.97 -162.71 -0.48 -14.19 16 21 C -0.32 -8.38 7.32 -15.07 -0.11 -8.49 16 22 H 0.07 1.73 7.04 -52.49 -0.37 1.36 16 23 C -0.03 -0.68 5.20 -17.43 -0.09 -0.77 16 24 N -0.92 -26.63 13.04 55.49 0.72 -25.91 16 25 Si 1.07 24.57 29.98 -169.99 -5.10 19.47 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.09 2.09 5.46 -51.93 -0.28 1.81 16 30 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.41 5.19 7.74 -40.82 -0.32 4.88 16 35 H 0.42 0.57 9.06 45.56 0.41 0.98 16 36 H 0.42 2.08 9.06 45.56 0.41 2.49 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.28 8.13 -51.93 -0.42 0.85 16 40 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 41 H 0.27 7.85 5.93 -40.82 -0.24 7.61 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -32.81 344.92 -5.76 -38.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.26 Total: 6.23 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.17 Total: 5.89 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.52 Total: -59.11 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.94 Total: -16.25 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.10 Total: 19.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.81 -5.76 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087641818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.411 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds