Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 H 1.08995 * 109.86994 * 303.78093 * 3 2 1 5 5 C 1.54326 * 109.87938 * 182.60527 * 3 2 1 6 6 H 1.08991 * 110.72391 * 336.75053 * 5 3 2 7 7 N 1.46497 * 110.72048 * 100.02819 * 5 3 2 8 8 C 1.34769 * 120.00119 * 204.99481 * 7 5 3 9 9 O 1.21579 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.47624 * 120.00241 * 179.97438 * 8 7 5 11 11 N 1.33059 * 120.52575 * 0.02562 * 10 8 7 12 12 N 1.28713 * 120.36414 * 179.97438 * 11 10 8 13 13 C 1.32947 * 121.55201 * 0.02562 * 12 11 10 14 14 O 1.35302 * 119.46835 * 179.97438 * 13 12 11 15 15 N 1.32465 * 121.06509 * 359.97001 * 13 12 11 16 16 C 1.32864 * 119.51097 * 359.78656 * 15 13 12 17 17 O 1.35287 * 120.71889 * 180.23413 * 16 15 13 18 18 C 1.55163 * 102.93823 * 218.38979 * 5 3 2 19 19 C 1.54686 * 101.67816 * 35.33670 * 18 5 3 20 20 N 1.47020 * 109.88265 * 64.79359 * 3 2 1 21 21 C 1.36929 * 125.65296 * 298.32587 * 20 3 2 22 22 H 1.08000 * 119.99882 * 336.98432 * 21 20 3 23 23 C 1.38806 * 120.00584 * 156.98736 * 21 20 3 24 24 N 1.31625 * 119.99812 * 336.23605 * 23 21 20 25 25 Si 1.86797 * 120.00398 * 156.51201 * 23 21 20 26 26 H 1.48503 * 109.46809 * 269.72373 * 25 23 21 27 27 H 1.48491 * 109.47190 * 29.72297 * 25 23 21 28 28 H 1.48496 * 109.47439 * 149.72708 * 25 23 21 29 29 H 1.09005 * 109.46579 * 292.01692 * 1 2 3 30 30 H 1.08998 * 109.47101 * 52.01069 * 1 2 3 31 31 H 1.09004 * 109.47136 * 172.01774 * 1 2 3 32 32 H 1.09002 * 109.47144 * 239.99960 * 2 1 3 33 33 H 1.09005 * 109.47481 * 119.99759 * 2 1 3 34 34 H 0.97001 * 120.00164 * 24.99455 * 7 5 3 35 35 H 0.96701 * 113.99860 * 89.99750 * 14 13 12 36 36 H 0.96704 * 113.99773 * 270.23380 * 17 16 15 37 37 H 1.08999 * 111.00240 * 153.58293 * 18 5 3 38 38 H 1.09004 * 111.00341 * 277.38899 * 18 5 3 39 39 H 1.09000 * 110.39150 * 204.36695 * 19 18 5 40 40 H 1.08996 * 110.23743 * 82.11455 * 19 18 5 41 41 H 0.96998 * 119.99973 * 353.85140 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9818 -0.8520 5 6 3.5818 1.4540 -0.0660 6 1 3.9907 0.5143 0.3050 7 7 4.0402 1.7169 -1.4323 8 6 5.2554 1.2902 -1.8293 9 8 5.9710 0.6866 -1.0535 10 6 5.7171 1.5545 -3.2063 11 7 4.9423 2.2136 -4.0641 12 7 5.3482 2.4428 -5.2638 13 6 6.5412 2.0341 -5.6846 14 8 6.9251 2.2976 -6.9550 15 7 7.3602 1.3732 -4.8802 16 6 6.9859 1.1178 -3.6312 17 8 7.8049 0.4488 -2.7875 18 6 3.9611 2.6275 0.8756 19 6 2.8734 2.5151 1.9697 20 7 1.6516 2.1102 1.2509 21 6 0.3676 2.3255 1.6753 22 1 -0.4409 2.3485 0.9597 23 6 0.1052 2.5142 3.0252 24 7 0.9377 2.0435 3.9296 25 14 -1.4334 3.4293 3.5587 26 1 -1.1318 4.8787 3.6752 27 1 -2.5047 3.2261 2.5507 28 1 -1.8867 2.9108 4.8743 29 1 -0.3633 0.3853 0.9528 30 1 -0.3633 0.6325 -0.8099 31 1 -0.3633 -1.0177 -0.1427 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4691 2.1981 -2.0514 35 1 7.3921 3.1381 -7.0585 36 1 7.6910 -0.5113 -2.8075 37 1 4.9567 2.4851 1.2958 38 1 3.8916 3.5833 0.3562 39 1 2.7247 3.4784 2.4578 40 1 3.1518 1.7571 2.7017 41 1 1.6860 1.4892 3.6581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087641818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = -34.710061 kcal Electronic energy + Delta-G solvation = -27624.291435 eV Core-core repulsion = 23541.018357 eV Total energy + Delta-G solvation = -4083.273078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.38623 -41.16973 -39.82783 -39.13853 -38.85834 -35.89441 -35.59673 -34.34348 -33.83616 -32.95574 -30.42388 -28.62813 -27.46925 -26.54873 -25.96873 -23.65062 -22.87816 -21.81629 -21.42609 -21.21218 -20.77142 -19.69575 -19.37093 -19.09664 -17.71407 -17.52380 -16.95387 -16.34688 -16.10826 -15.99868 -15.61330 -15.30682 -15.14697 -14.87211 -14.60017 -14.26646 -14.04574 -13.96977 -13.70691 -13.63230 -13.35346 -12.91322 -12.81644 -12.76556 -12.64794 -12.53624 -12.15708 -11.87959 -11.83620 -11.72659 -11.54221 -11.38041 -11.33385 -11.31530 -10.74577 -10.44500 -10.18870 -8.90963 -8.14018 -5.27248 -1.30217 -1.02179 1.18328 1.29152 1.61875 1.65607 1.69320 1.73658 1.85242 2.04573 2.36940 2.70089 3.18994 3.24145 3.30672 3.49439 3.67521 3.72984 3.75777 4.11162 4.18425 4.29879 4.40704 4.46237 4.58894 4.67759 4.86020 4.95627 5.01060 5.09219 5.14399 5.16377 5.23513 5.31605 5.51762 5.67229 5.85026 6.15963 6.18105 6.23378 6.43244 6.78749 6.86965 7.00571 7.78471 8.37801 9.14012 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.002877 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.638675 B = 9729.807280 C =10043.311792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.154 3.846 4 H 0.051 0.949 5 C 0.151 3.849 6 H 0.095 0.905 7 N -0.683 5.683 8 C 0.585 3.415 9 O -0.531 6.531 10 C -0.057 4.057 11 N -0.113 5.113 12 N -0.295 5.295 13 C 0.492 3.508 14 O -0.446 6.446 15 N -0.515 5.515 16 C 0.432 3.568 17 O -0.448 6.448 18 C -0.131 4.131 19 C 0.148 3.852 20 N -0.609 5.609 21 C -0.309 4.309 22 H 0.067 0.933 23 C -0.082 4.082 24 N -0.955 5.955 25 Si 1.112 2.888 26 H -0.289 1.289 27 H -0.270 1.270 28 H -0.300 1.300 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.418 0.582 35 H 0.447 0.553 36 H 0.441 0.559 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.007 0.993 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -1.124 -20.145 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.047 3.953 4 H 0.068 0.932 5 C 0.046 3.954 6 H 0.113 0.887 7 N -0.334 5.334 8 C 0.367 3.633 9 O -0.406 6.406 10 C -0.210 4.210 11 N 0.028 4.972 12 N -0.158 5.158 13 C 0.188 3.812 14 O -0.253 6.253 15 N -0.259 5.259 16 C 0.234 3.766 17 O -0.259 6.259 18 C -0.170 4.170 19 C 0.022 3.978 20 N -0.335 5.335 21 C -0.438 4.438 22 H 0.084 0.916 23 C -0.277 4.277 24 N -0.599 5.599 25 Si 0.938 3.062 26 H -0.216 1.216 27 H -0.195 1.195 28 H -0.227 1.227 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.256 0.744 35 H 0.314 0.686 36 H 0.309 0.691 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.280 -0.454 -19.034 22.130 hybrid contribution 1.287 -0.930 -0.727 1.747 sum 12.567 -1.384 -19.762 23.460 Atomic orbital electron populations 1.21798 0.95837 1.00204 1.02345 1.21830 0.96895 0.96981 1.00100 1.21319 0.91033 0.92643 0.90265 0.93171 1.21851 0.93974 0.98838 0.80760 0.88736 1.45702 1.16986 1.56696 1.13996 1.17105 0.82090 0.79687 0.84373 1.90869 1.54948 1.41472 1.53294 1.23790 0.94287 1.04599 0.98302 1.73947 1.24646 1.02789 0.95805 1.73874 1.15346 1.19018 1.07577 1.21972 0.86175 0.86933 0.86146 1.84668 1.77645 1.47156 1.15791 1.68333 1.36613 1.17338 1.03642 1.19869 0.84118 0.87835 0.84755 1.84642 1.58406 1.26779 1.56088 1.23056 0.98439 0.98716 0.96799 1.21354 0.86417 0.96439 0.93542 1.44704 1.01576 1.65743 1.21442 1.19883 0.84374 1.46559 0.93025 0.91555 1.26950 1.06327 1.02050 0.92423 1.70843 1.18355 1.34782 1.35904 0.82860 0.72797 0.75365 0.75157 1.21615 1.19511 1.22706 0.92760 0.93258 0.93120 0.91122 0.94611 0.74427 0.68625 0.69060 0.90184 0.90369 0.95783 0.97487 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 8.89 71.98 0.64 -4.68 16 2 C -0.12 -4.23 5.47 30.60 0.17 -4.06 16 3 C 0.15 5.69 3.01 45.34 0.14 5.83 16 4 H 0.05 1.79 7.72 -2.39 -0.02 1.77 16 5 C 0.15 4.83 2.85 46.18 0.13 4.96 16 6 H 0.09 3.21 7.26 -2.39 -0.02 3.19 16 7 N -0.68 -17.49 5.17 -440.00 -2.27 -19.76 16 8 C 0.59 14.72 7.80 86.72 0.68 15.40 16 9 O -0.53 -15.65 14.91 16.47 0.25 -15.40 16 10 C -0.06 -1.20 6.85 42.05 0.29 -0.91 16 11 N -0.11 -2.41 10.88 -48.09 -0.52 -2.93 16 12 N -0.29 -5.91 11.60 -174.22 -2.02 -7.93 16 13 C 0.49 8.36 8.81 180.33 1.59 9.94 16 14 O -0.45 -4.93 13.63 -85.88 -1.17 -6.10 16 15 N -0.52 -9.47 10.57 -424.97 -4.49 -13.96 16 16 C 0.43 8.25 7.85 85.15 0.67 8.92 16 17 O -0.45 -7.66 11.76 -65.29 -0.77 -8.43 16 18 C -0.13 -4.53 6.76 31.91 0.22 -4.32 16 19 C 0.15 6.74 5.39 86.78 0.47 7.21 16 20 N -0.61 -28.55 2.97 -668.70 -1.98 -30.53 16 21 C -0.31 -16.19 7.32 84.03 0.62 -15.58 16 22 H 0.07 3.43 7.04 -2.91 -0.02 3.41 16 23 C -0.08 -4.52 5.20 84.86 0.44 -4.08 16 24 N -0.96 -57.56 13.04 21.65 0.28 -57.28 16 25 Si 1.11 50.35 29.98 68.60 2.06 52.41 16 26 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H 0.05 2.43 5.46 -2.38 -0.01 2.42 16 30 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.42 9.57 7.74 -92.71 -0.72 8.85 16 35 H 0.45 -0.19 9.06 -74.06 -0.67 -0.87 16 36 H 0.44 3.43 9.06 -74.05 -0.67 2.76 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.02 1.20 8.13 -2.39 -0.02 1.18 16 40 H 0.01 0.37 6.67 -2.39 -0.02 0.35 16 41 H 0.26 15.68 5.93 -92.71 -0.55 15.13 16 Total: -1.00 -71.59 344.92 -5.32 -76.91 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.71 Total: 14.37 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.04 Total: 18.64 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -11.01 Total: -132.39 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.69 Total: -29.93 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.06 Total: 52.41 kcal Total: -71.59 -5.32 -76.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087641818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.199 kcal (2) G-P(sol) polarization free energy of solvation -71.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds