Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48502 * 109.46970 * 272.94276 * 3 2 1 5 5 H 1.48493 * 109.47023 * 32.94544 * 3 2 1 6 6 H 1.48501 * 109.46804 * 152.94602 * 3 2 1 7 7 C 1.38818 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00200 * 339.34958 * 7 2 1 9 9 N 1.36937 * 119.99469 * 159.34198 * 7 2 1 10 10 C 1.46928 * 120.62953 * 152.61074 * 9 7 2 11 11 C 1.53185 * 108.77855 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.31526 * 54.63516 * 11 10 9 13 13 H 1.08994 * 109.46176 * 58.65309 * 12 11 10 14 14 N 1.46498 * 109.45319 * 178.62255 * 12 11 10 15 15 C 1.34774 * 120.00283 * 275.03483 * 14 12 11 16 16 O 1.21286 * 119.99499 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00233 * 179.97438 * 15 14 12 18 18 C 1.50704 * 109.46842 * 180.02562 * 17 15 14 19 19 C 1.38233 * 119.58672 * 125.00711 * 18 17 15 20 20 C 1.38599 * 119.18375 * 179.97438 * 19 18 17 21 21 C 1.38876 * 118.40254 * 359.97438 * 20 19 18 22 22 F 1.35103 * 120.44339 * 180.02562 * 21 20 19 23 23 C 1.38423 * 119.11182 * 359.97438 * 21 20 19 24 24 N 1.31849 * 119.59097 * 304.72554 * 18 17 15 25 25 C 1.53044 * 109.53862 * 298.63648 * 12 11 10 26 26 H 1.09000 * 109.49860 * 301.38317 * 25 12 11 27 27 O 1.42897 * 109.50080 * 181.31680 * 25 12 11 28 28 C 1.46925 * 120.63632 * 332.63130 * 9 7 2 29 29 H 0.97000 * 119.99788 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58580 * 246.20383 * 10 9 7 31 31 H 1.08999 * 109.58511 * 6.47705 * 10 9 7 32 32 H 1.09001 * 109.49483 * 294.67931 * 11 10 9 33 33 H 1.09001 * 109.49917 * 174.59145 * 11 10 9 34 34 H 0.97010 * 119.99875 * 95.03056 * 14 12 11 35 35 H 1.08994 * 109.47444 * 299.99839 * 17 15 14 36 36 H 1.09002 * 109.46874 * 60.00548 * 17 15 14 37 37 H 1.07990 * 120.40866 * 359.95175 * 19 18 17 38 38 H 1.07997 * 120.79359 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.63774 * 180.02562 * 23 21 20 40 40 H 0.96696 * 113.99788 * 180.02562 * 27 25 12 41 41 H 1.09004 * 109.58683 * 113.79426 * 28 9 7 42 42 H 1.09001 * 109.70066 * 353.44457 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0823 -1.3983 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6368 7 6 2.0102 -1.2023 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3136 -1.2406 -0.4178 10 6 4.2350 -2.2631 0.0961 11 6 4.8752 -2.9910 -1.0901 12 6 5.5289 -1.9662 -2.0198 13 1 6.2780 -1.3998 -1.4666 14 7 6.1705 -2.6616 -3.1383 15 6 7.4211 -3.1454 -3.0028 16 8 8.0154 -3.0047 -1.9549 17 6 8.0808 -3.8613 -4.1531 18 6 9.4637 -4.2998 -3.7451 19 6 9.8203 -5.6302 -3.8625 20 6 11.0944 -6.0242 -3.4853 21 6 11.9682 -5.0592 -3.0016 22 9 13.2201 -5.3975 -2.6227 23 6 11.5396 -3.7459 -2.9138 24 7 10.3203 -3.4088 -3.2859 25 6 4.4622 -1.0100 -2.5584 26 1 3.6998 -1.5783 -3.0912 27 8 5.0685 -0.0725 -3.4503 28 6 3.8173 -0.2597 -1.3888 29 1 -0.4850 0.8401 -0.0004 30 1 5.0115 -1.7873 0.6952 31 1 3.6845 -2.9753 0.7107 32 1 4.1086 -3.5408 -1.6362 33 1 5.6316 -3.6859 -0.7253 34 1 5.6952 -2.7738 -3.9764 35 1 7.4886 -4.7349 -4.4252 36 1 8.1500 -3.1885 -5.0080 37 1 9.1146 -6.3536 -4.2430 38 1 11.4006 -7.0566 -3.5665 39 1 12.2122 -2.9885 -2.5393 40 1 4.4495 0.5660 -3.8301 41 1 4.5598 0.3795 -0.9109 42 1 2.9923 0.3505 -1.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090358553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -93.544740 kcal Electronic energy + Delta-G solvation = -27093.742402 eV Core-core repulsion = 22987.998099 eV Total energy + Delta-G solvation = -4105.744303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -50.00076 -41.50650 -40.71377 -39.39053 -37.02642 -35.79046 -34.16461 -33.70989 -33.45792 -31.85214 -30.73922 -28.98779 -26.76642 -24.97549 -24.67728 -23.77325 -23.10337 -21.41374 -21.22540 -19.07645 -18.65905 -18.41595 -18.28409 -17.84258 -17.75897 -17.12210 -16.79971 -16.40878 -16.18060 -16.08137 -15.34927 -15.18181 -15.07619 -14.90869 -14.76634 -14.62106 -14.34761 -14.04543 -13.94408 -13.87983 -13.71614 -13.11954 -13.07924 -12.88029 -12.68033 -12.49172 -12.35890 -11.99536 -11.73466 -11.40098 -11.10154 -10.97002 -10.89234 -10.66754 -10.48619 -10.00071 -9.82676 -9.02734 -8.19845 -5.53257 -0.13064 0.15765 1.24197 1.40765 1.48487 1.77350 2.15528 2.36687 2.68430 2.89250 2.98814 3.13899 3.29292 3.33788 3.63375 3.78548 3.79548 3.88404 3.99923 4.04240 4.08418 4.25858 4.34804 4.36318 4.51457 4.58792 4.65296 4.69840 4.76553 4.84038 4.89452 4.90856 4.93943 4.98313 5.01089 5.31885 5.53867 5.62422 5.81409 6.09991 6.67130 6.72901 6.87258 6.90490 7.39659 7.55160 7.95371 8.99434 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.002547 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.725570 B =10992.562398 C =11077.047315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.028 4.028 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.311 1.311 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.061 0.939 9 N -0.613 5.613 10 C 0.143 3.857 11 C -0.124 4.124 12 C 0.170 3.830 13 H 0.058 0.942 14 N -0.706 5.706 15 C 0.513 3.487 16 O -0.576 6.576 17 C -0.083 4.083 18 C 0.114 3.886 19 C -0.126 4.126 20 C -0.106 4.106 21 C 0.030 3.970 22 F -0.137 7.137 23 C 0.061 3.939 24 N -0.468 5.468 25 C 0.098 3.902 26 H 0.075 0.925 27 O -0.570 6.570 28 C 0.097 3.903 29 H 0.263 0.737 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.187 0.813 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.393 0.607 41 H 0.026 0.974 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.651 -12.575 -14.856 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.223 4.223 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.079 0.921 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.064 3.936 13 H 0.076 0.924 14 N -0.358 5.358 15 C 0.300 3.700 16 O -0.454 6.454 17 C -0.123 4.123 18 C -0.025 4.025 19 C -0.145 4.145 20 C -0.133 4.133 21 C 0.009 3.991 22 F -0.116 7.116 23 C -0.098 4.098 24 N -0.176 5.176 25 C 0.037 3.963 26 H 0.093 0.907 27 O -0.376 6.376 28 C -0.030 4.030 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.151 0.849 37 H 0.204 0.796 38 H 0.195 0.805 39 H 0.186 0.814 40 H 0.243 0.757 41 H 0.044 0.956 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.267 -11.863 -13.890 27.284 hybrid contribution -0.162 0.733 0.269 0.797 sum 20.105 -11.130 -13.620 26.713 Atomic orbital electron populations 1.69940 1.07147 1.27279 1.55185 1.25834 0.95771 1.00477 1.00242 0.86059 0.78296 0.80863 0.78041 1.19164 1.23946 1.19903 1.18886 0.86186 0.93883 1.38935 0.92083 1.44420 1.08016 1.34394 1.47085 1.21094 0.91821 0.90794 0.94548 1.22195 0.99727 0.97629 0.96819 1.20576 0.93198 0.91889 0.87947 0.92405 1.45797 1.15676 1.57580 1.16719 1.20958 0.80864 0.78525 0.89636 1.90728 1.64292 1.58960 1.31466 1.20732 0.90523 1.04098 0.96936 1.21131 0.95296 0.90625 0.95402 1.22279 0.96893 0.96199 0.99166 1.22009 0.93217 1.01136 0.96895 1.18999 0.81566 0.95505 1.03035 1.91505 1.38030 1.92920 1.89138 1.23032 0.93551 0.94401 0.98784 1.67477 1.02192 1.39133 1.08833 1.22395 0.93731 0.90092 0.90083 0.90727 1.86436 1.40452 1.47826 1.62930 1.22047 0.97185 0.92724 0.91006 0.92770 0.95769 0.91300 0.90541 0.90718 0.74812 0.82587 0.84916 0.79582 0.80535 0.81416 0.75698 0.95579 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 13.97 21.65 0.30 -57.37 16 2 C -0.03 -1.57 5.23 84.86 0.44 -1.13 16 3 Si 0.94 45.51 24.35 68.60 1.67 47.18 16 4 H -0.27 -11.71 6.62 99.48 0.66 -11.05 16 5 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 6 H -0.27 -13.33 6.64 99.48 0.66 -12.67 16 7 C -0.25 -13.64 10.04 84.03 0.84 -12.80 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.61 -28.04 2.77 -699.09 -1.94 -29.97 16 10 C 0.14 5.54 6.52 86.36 0.56 6.11 16 11 C -0.12 -3.90 5.65 30.67 0.17 -3.73 16 12 C 0.17 5.29 2.12 45.02 0.10 5.39 16 13 H 0.06 2.20 7.58 -2.39 -0.02 2.19 16 14 N -0.71 -16.47 4.92 -442.42 -2.18 -18.65 16 15 C 0.51 12.75 7.73 87.66 0.68 13.43 16 16 O -0.58 -20.39 15.01 -3.05 -0.05 -20.43 16 17 C -0.08 -1.17 6.10 29.10 0.18 -0.99 16 18 C 0.11 2.13 5.76 42.56 0.24 2.37 16 19 C -0.13 -1.52 9.71 22.35 0.22 -1.30 16 20 C -0.11 -1.39 10.16 22.51 0.23 -1.16 16 21 C 0.03 0.56 7.35 22.47 0.17 0.73 16 22 F -0.14 -2.62 17.28 44.97 0.78 -1.85 16 23 C 0.06 1.34 11.17 84.73 0.95 2.29 16 24 N -0.47 -11.79 9.23 -183.70 -1.70 -13.49 16 25 C 0.10 3.12 3.14 30.67 0.10 3.22 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 O -0.57 -15.95 13.16 -148.98 -1.96 -17.91 16 28 C 0.10 3.95 3.83 86.36 0.33 4.28 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.42 6.86 8.60 -92.70 -0.80 6.07 16 35 H 0.16 0.74 7.87 -2.39 -0.02 0.72 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.19 0.62 7.95 -2.92 -0.02 0.60 16 38 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.39 8.23 9.08 -74.06 -0.67 7.55 16 41 H 0.03 1.13 7.08 -2.39 -0.02 1.11 16 42 H 0.07 2.84 4.50 -2.39 -0.01 2.83 16 Total: -1.00 -78.77 349.32 -0.35 -79.13 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.49 Total: 16.67 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.20 Total: 16.69 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -5.51 Total: -119.48 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.01 Total: -38.34 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -78.77 -0.35 -79.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090358553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.419 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds