Wall clock time and date at job start Tue Mar 31 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99587 * 2 1 4 4 H 1.48501 * 109.47029 * 240.00060 * 3 2 1 5 5 H 1.48498 * 109.47525 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47132 * 120.00384 * 3 2 1 7 7 C 1.38807 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00217 * 197.34639 * 7 2 1 9 9 N 1.36936 * 120.00160 * 17.35005 * 7 2 1 10 10 C 1.46928 * 120.63008 * 27.69786 * 9 7 2 11 11 C 1.53191 * 108.77785 * 126.36857 * 10 9 7 12 12 C 1.53037 * 109.31090 * 54.63744 * 11 10 9 13 13 H 1.08997 * 109.45046 * 58.64739 * 12 11 10 14 14 N 1.46504 * 109.45889 * 178.61554 * 12 11 10 15 15 C 1.34774 * 119.99696 * 275.06070 * 14 12 11 16 16 O 1.21274 * 120.00470 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99493 * 180.02562 * 15 14 12 18 18 C 1.50705 * 109.46574 * 180.02562 * 17 15 14 19 19 N 1.31871 * 119.63425 * 90.00304 * 18 17 15 20 20 C 1.31850 * 121.74994 * 179.97438 * 19 18 17 21 21 C 1.38229 * 120.82081 * 359.97438 * 20 19 18 22 22 C 1.38599 * 119.18777 * 0.02562 * 21 20 19 23 23 C 1.38418 * 119.63752 * 270.01729 * 18 17 15 24 24 F 1.35100 * 120.44372 * 0.02881 * 23 18 17 25 25 C 1.53041 * 109.53683 * 298.63395 * 12 11 10 26 26 H 1.09003 * 109.49966 * 301.41212 * 25 12 11 27 27 O 1.42900 * 109.50045 * 181.31740 * 25 12 11 28 28 C 1.46925 * 120.63436 * 207.67335 * 9 7 2 29 29 H 0.96998 * 120.00123 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58764 * 246.15786 * 10 9 7 31 31 H 1.09007 * 109.58784 * 6.58074 * 10 9 7 32 32 H 1.09002 * 109.49978 * 294.68315 * 11 10 9 33 33 H 1.09000 * 109.49787 * 174.58710 * 11 10 9 34 34 H 0.97000 * 120.00115 * 95.06790 * 14 12 11 35 35 H 1.08998 * 109.47368 * 60.00427 * 17 15 14 36 36 H 1.09000 * 109.47129 * 299.99968 * 17 15 14 37 37 H 1.08003 * 119.59003 * 179.97438 * 20 19 18 38 38 H 1.07993 * 120.40847 * 179.72455 * 21 20 19 39 39 H 1.08004 * 120.80117 * 179.97438 * 22 21 20 40 40 H 0.96695 * 114.00318 * 179.97438 * 27 25 12 41 41 H 1.08996 * 109.58490 * 113.83944 * 28 9 7 42 42 H 1.08999 * 109.70326 * 353.48930 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2783 9 7 1.3724 -2.3609 -0.3547 10 6 0.2280 -2.3340 -1.2758 11 6 0.5014 -3.3031 -2.4303 12 6 0.8196 -4.6886 -1.8636 13 1 -0.0196 -5.0356 -1.2607 14 7 1.0492 -5.6259 -2.9659 15 6 0.0057 -6.2458 -3.5516 16 8 -1.1234 -6.0275 -3.1666 17 6 0.2420 -7.2105 -4.6851 18 6 -1.0783 -7.7611 -5.1594 19 7 -1.7387 -7.1384 -6.1160 20 6 -2.8965 -7.5836 -6.5629 21 6 -3.4641 -8.7302 -6.0397 22 6 -2.8010 -9.4138 -5.0327 23 6 -1.5844 -8.9148 -4.5860 24 9 -0.9034 -9.5477 -3.6058 25 6 2.0751 -4.6091 -0.9920 26 1 2.9090 -4.2384 -1.5882 27 8 2.3890 -5.9089 -0.4880 28 6 1.8195 -3.6548 0.1787 29 1 -0.4850 0.8400 0.0004 30 1 -0.6741 -2.6411 -0.7469 31 1 0.0984 -1.3254 -1.6683 32 1 1.3501 -2.9447 -3.0130 33 1 -0.3792 -3.3650 -3.0697 34 1 1.9522 -5.8003 -3.2740 35 1 0.8744 -8.0285 -4.3403 36 1 0.7351 -6.6915 -5.5070 37 1 -3.4078 -7.0456 -7.3476 38 1 -4.4148 -9.0865 -6.4077 39 1 -3.2209 -10.3122 -4.6049 40 1 3.1757 -5.9335 0.0737 41 1 1.0472 -4.0696 0.8264 42 1 2.7395 -3.5197 0.7475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090521279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:46 Heat of formation + Delta-G solvation = -71.711360 kcal Electronic energy + Delta-G solvation = -27377.377844 eV Core-core repulsion = 23272.580308 eV Total energy + Delta-G solvation = -4104.797537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -49.16401 -40.49799 -39.51344 -37.89069 -35.39898 -34.29195 -33.43272 -32.19839 -31.82577 -30.11321 -28.83494 -28.03598 -25.11295 -23.83951 -23.13250 -22.33359 -21.73019 -20.21409 -19.45754 -17.92826 -17.50270 -17.34221 -16.86312 -16.77910 -16.43981 -15.80798 -15.72268 -14.90620 -14.78056 -14.27648 -14.11157 -13.97317 -13.85432 -13.61465 -13.39747 -13.28297 -13.10387 -12.78378 -12.44476 -12.26073 -12.18047 -11.84868 -11.55773 -11.10602 -10.85620 -10.66636 -10.33692 -10.26593 -10.18564 -9.94076 -9.84979 -9.81730 -9.70817 -9.44529 -9.04160 -8.73421 -8.44124 -6.77061 -5.84316 -3.28520 0.65713 0.84131 2.84488 3.15452 3.35495 3.41822 3.42484 3.58207 3.77862 4.03133 4.32033 4.37676 4.43779 4.52742 4.64965 4.92570 5.07451 5.15111 5.30871 5.32016 5.33427 5.46404 5.49922 5.56957 5.58427 5.71945 5.78559 5.98699 6.13235 6.33168 6.35065 6.48939 6.54619 6.68744 6.78228 6.88784 7.30100 7.60714 7.61366 7.72986 7.74420 7.92703 8.38073 8.45261 9.13482 9.76030 10.31970 11.24230 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.002843 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.510875 B = 9846.219423 C =10618.846374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.164 3.836 13 H 0.087 0.913 14 N -0.714 5.714 15 C 0.521 3.479 16 O -0.536 6.536 17 C -0.098 4.098 18 C 0.130 3.870 19 N -0.447 5.447 20 C 0.093 3.907 21 C -0.148 4.148 22 C -0.109 4.109 23 C 0.061 3.939 24 F -0.127 7.127 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.571 6.571 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.023 0.977 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.397 0.603 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.373 0.627 41 H 0.028 0.972 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -18.660 -12.486 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.105 0.895 14 N -0.364 5.364 15 C 0.305 3.695 16 O -0.412 6.412 17 C -0.138 4.138 18 C -0.010 4.010 19 N -0.155 5.155 20 C -0.064 4.064 21 C -0.167 4.167 22 C -0.135 4.135 23 C 0.040 3.960 24 F -0.105 7.105 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.375 6.375 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.220 0.780 41 H 0.046 0.954 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.735 -17.764 -12.845 21.990 hybrid contribution 1.023 0.050 0.757 1.273 sum -0.713 -17.715 -12.088 21.458 Atomic orbital electron populations 1.70029 1.05305 1.25877 1.53032 1.25070 0.95294 0.98542 1.00490 0.86339 0.78906 0.83180 0.78135 1.20939 1.21551 1.20838 1.19114 0.92683 0.84696 1.42507 0.91572 1.44038 1.35884 1.01008 1.50269 1.20831 0.88651 0.98422 0.87566 1.22600 1.01053 0.94258 1.00758 1.21002 0.97494 0.89303 0.86203 0.89529 1.46017 1.09046 1.45056 1.36283 1.20068 0.85348 0.80975 0.83087 1.90727 1.22593 1.63980 1.63941 1.20588 0.94199 1.00160 0.98885 1.20636 0.96549 0.90588 0.93250 1.67492 1.08119 1.29604 1.10320 1.22825 0.91342 0.93754 0.98525 1.22070 1.01256 0.96569 0.96845 1.21636 0.93317 1.01224 0.97364 1.18513 0.93041 0.94408 0.90077 1.91525 1.78809 1.80937 1.59268 1.22778 0.95986 0.83094 0.96233 0.92550 1.86484 1.50592 1.30241 1.70204 1.21518 0.98774 0.87434 0.92945 0.93367 0.95867 0.88853 0.92309 0.91915 0.76979 0.87041 0.86421 0.81838 0.83737 0.83502 0.78018 0.95368 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -7.00 9.59 -15.06 -0.14 -7.14 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.52 2.99 -172.33 -0.52 -15.03 16 10 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 11 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 12 C 0.16 3.01 2.12 -67.89 -0.14 2.87 16 13 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 14 N -0.71 -10.80 4.92 -53.77 -0.26 -11.06 16 15 C 0.52 8.34 7.79 -10.98 -0.09 8.25 16 16 O -0.54 -10.95 15.70 5.56 0.09 -10.86 16 17 C -0.10 -1.16 5.82 -29.03 -0.17 -1.33 16 18 C 0.13 1.70 5.28 -82.51 -0.44 1.26 16 19 N -0.45 -5.80 10.27 -9.42 -0.10 -5.90 16 20 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 21 C -0.15 -1.20 10.11 -39.45 -0.40 -1.59 16 22 C -0.11 -1.03 10.16 -39.21 -0.40 -1.43 16 23 C 0.06 0.75 7.27 -39.28 -0.29 0.47 16 24 F -0.13 -1.63 16.49 2.25 0.04 -1.59 16 25 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -8.56 13.16 -35.23 -0.46 -9.02 16 28 C 0.12 2.48 6.14 -3.71 -0.02 2.46 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.51 6.04 -51.93 -0.31 2.20 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 4.78 8.60 -40.82 -0.35 4.42 16 35 H 0.11 1.06 7.63 -51.93 -0.40 0.66 16 36 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.37 4.00 9.08 45.56 0.41 4.41 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -34.71 356.19 -7.68 -42.39 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.81 Total: 7.86 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.62 Total: 6.92 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.26 Total: -57.38 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.38 Total: -19.88 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.71 -7.68 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090521279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.319 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds