Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21558 * 120.00310 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.00249 * 179.97438 * 5 4 3 8 8 C 1.39559 * 120.54453 * 359.71645 * 7 5 4 9 9 N 1.31661 * 120.62353 * 179.72541 * 8 7 5 10 10 C 1.31947 * 121.90442 * 0.54352 * 9 8 7 11 11 C 1.38531 * 121.04471 * 359.74581 * 10 9 8 12 12 F 1.35099 * 120.37721 * 179.97438 * 11 10 9 13 13 C 1.38615 * 119.25465 * 359.97438 * 11 10 9 14 14 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 15 15 N 1.47155 * 108.38177 * 292.37811 * 14 2 1 16 16 C 1.36941 * 120.97883 * 129.48751 * 15 14 2 17 17 H 1.08003 * 119.99321 * 206.20415 * 16 15 14 18 18 C 1.38813 * 120.00092 * 26.20602 * 16 15 14 19 19 N 1.31617 * 120.00396 * 16.93122 * 18 16 15 20 20 Si 1.86802 * 119.99573 * 196.92891 * 18 16 15 21 21 H 1.48505 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47152 * 120.00095 * 20 18 16 23 23 H 1.48505 * 109.47028 * 240.00035 * 20 18 16 24 24 C 1.47148 * 118.03767 * 309.45938 * 15 14 2 25 25 C 1.53302 * 108.38216 * 50.53749 * 24 15 14 26 26 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 27 27 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 28 28 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 30 30 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 31 31 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 32 32 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.69250 * 359.97438 * 8 7 5 34 34 H 1.07994 * 119.47591 * 179.72224 * 10 9 8 35 35 H 1.08001 * 120.87088 * 179.97438 * 13 11 10 36 36 H 1.09006 * 109.67764 * 52.09570 * 14 2 1 37 37 H 1.08995 * 109.68252 * 172.61426 * 14 2 1 38 38 H 0.96988 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.68089 * 290.82070 * 24 15 14 40 40 H 1.08994 * 109.68449 * 170.26152 * 24 15 14 41 41 H 1.09003 * 109.51104 * 67.62096 * 25 24 15 42 42 H 1.09003 * 109.51218 * 187.72433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5794 4.0133 0.6098 7 6 1.3909 4.1191 2.6190 8 6 0.5842 3.4535 3.5431 9 7 0.1509 4.0708 4.6222 10 6 0.4468 5.3326 4.8701 11 6 1.2372 6.0653 3.9998 12 9 1.5314 7.3566 4.2666 13 6 1.7230 5.4586 2.8520 14 6 2.0420 -0.7257 -1.2495 15 7 1.6959 -2.1512 -1.1327 16 6 1.0615 -2.8083 -2.1530 17 1 0.4485 -3.6718 -1.9404 18 6 1.2064 -2.3648 -3.4604 19 7 2.1885 -1.5461 -3.7726 20 14 0.0073 -2.9299 -4.7766 21 1 -0.9976 -3.8413 -4.1724 22 1 -0.6808 -1.7498 -5.3589 23 1 0.7475 -3.6485 -5.8448 24 6 2.0522 -2.8497 0.1124 25 6 1.5397 -2.0205 1.2956 26 8 2.0075 -0.6759 1.1657 27 1 -0.3634 0.5121 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1309 1.4414 -0.0018 31 1 1.6765 1.9568 -0.8889 32 1 0.9980 1.6609 1.8365 33 1 0.3162 2.4212 3.3735 34 1 0.0664 5.8016 5.7654 35 1 2.3411 6.0054 2.1553 36 1 1.5703 -0.3049 -2.1375 37 1 3.1239 -0.6146 -1.3210 38 1 2.2894 -1.2359 -4.6860 39 1 3.1352 -2.9530 0.1784 40 1 1.5873 -3.8355 0.1263 41 1 0.4497 -2.0278 1.3003 42 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107860545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = -77.575232 kcal Electronic energy + Delta-G solvation = -27430.040885 eV Core-core repulsion = 23324.989072 eV Total energy + Delta-G solvation = -4105.051813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.09897 -41.78087 -40.77626 -39.85759 -36.60539 -35.99554 -33.88684 -33.34900 -33.18231 -31.95647 -29.56063 -28.12389 -27.58768 -25.47671 -24.94752 -24.75966 -22.94904 -21.90822 -20.40879 -19.53604 -18.92766 -18.49597 -18.03334 -17.46087 -17.37565 -17.01514 -16.79153 -16.68531 -16.15734 -16.03595 -15.57876 -15.37655 -15.21179 -14.98271 -14.68564 -14.58671 -14.46266 -14.27557 -13.94772 -13.51296 -13.40824 -13.16325 -12.91045 -12.80111 -12.51921 -12.41693 -12.10641 -11.93873 -11.85733 -11.64812 -11.15028 -11.10195 -10.78924 -10.69935 -10.48921 -10.32163 -10.10077 -8.70499 -7.88837 -5.35187 -0.66202 -0.19106 1.45738 1.48734 1.58141 1.62180 1.86443 2.48708 2.54747 2.77717 2.85464 3.14023 3.25684 3.47080 3.53193 3.57385 3.63153 3.91274 3.96321 4.02553 4.12366 4.36806 4.44503 4.49725 4.58104 4.61855 4.67652 4.73883 4.75332 4.81150 4.98876 5.06364 5.13515 5.22369 5.25021 5.34981 5.39370 5.55850 5.63499 6.30510 6.35859 6.38498 6.54015 7.01240 7.08532 7.77796 8.31238 9.16820 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.002768 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.850977 B =10114.729278 C =10605.991602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 C 0.148 3.852 4 N -0.693 5.693 5 C 0.561 3.439 6 O -0.574 6.574 7 C -0.163 4.163 8 C 0.136 3.864 9 N -0.468 5.468 10 C 0.109 3.891 11 C 0.041 3.959 12 F -0.126 7.126 13 C -0.058 4.058 14 C 0.167 3.833 15 N -0.607 5.607 16 C -0.256 4.256 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.290 1.290 23 H -0.297 1.297 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.415 0.585 33 H 0.190 0.810 34 H 0.205 0.795 35 H 0.155 0.845 36 H 0.067 0.933 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 10.834 18.601 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 C 0.024 3.976 4 N -0.345 5.345 5 C 0.348 3.652 6 O -0.455 6.455 7 C -0.168 4.168 8 C -0.022 4.022 9 N -0.176 5.176 10 C -0.049 4.049 11 C 0.020 3.980 12 F -0.105 7.105 13 C -0.086 4.086 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.386 4.386 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.224 1.224 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.303 6.303 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.254 0.746 33 H 0.206 0.794 34 H 0.222 0.778 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.958 10.906 18.611 22.379 hybrid contribution 0.357 -0.005 -1.983 2.015 sum -5.601 10.901 16.628 20.656 Atomic orbital electron populations 1.22143 0.93789 1.03046 1.02322 1.22193 0.94765 0.90381 0.87467 1.21130 0.99144 0.89511 0.87835 1.45653 1.52747 1.10882 1.25257 1.18233 0.79877 0.81834 0.85302 1.90797 1.39712 1.67035 1.47914 1.20713 1.03466 0.95136 0.97463 1.23418 0.90318 1.00950 0.87546 1.67909 1.21224 1.09310 1.19112 1.23670 0.92407 0.89628 0.99170 1.18655 1.01788 0.80740 0.96841 1.91559 1.91827 1.33540 1.93583 1.21863 0.96670 0.94054 0.95976 1.21057 0.95439 0.84353 0.95130 1.44262 1.68613 1.05594 1.14642 1.19530 1.21068 1.11941 0.86057 0.90876 1.25765 0.98799 1.00823 0.99137 1.70178 1.31024 1.38582 1.18413 0.85252 0.78883 0.77487 0.79094 1.18762 1.21717 1.22399 1.21831 0.97006 0.96404 0.87232 1.23114 0.99223 0.81695 0.98402 1.87819 1.73291 1.26489 1.42741 0.90116 0.92522 0.91902 0.92174 0.90346 0.74561 0.79356 0.77808 0.82728 0.91450 0.98931 0.94104 0.97059 0.91046 0.91881 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 7.91 71.98 0.57 -4.07 16 2 C 0.09 3.19 0.76 -10.70 -0.01 3.18 16 3 C 0.15 4.74 4.82 86.38 0.42 5.16 16 4 N -0.69 -17.15 5.11 -465.98 -2.38 -19.53 16 5 C 0.56 14.94 7.78 86.79 0.68 15.61 16 6 O -0.57 -20.05 16.42 -3.90 -0.06 -20.11 16 7 C -0.16 -3.29 5.89 -20.00 -0.12 -3.40 16 8 C 0.14 2.16 10.71 85.04 0.91 3.07 16 9 N -0.47 -7.42 10.34 -194.60 -2.01 -9.43 16 10 C 0.11 1.43 11.16 84.75 0.95 2.38 16 11 C 0.04 0.66 7.33 22.43 0.16 0.82 16 12 F -0.13 -2.08 17.28 44.97 0.78 -1.31 16 13 C -0.06 -1.13 9.70 22.78 0.22 -0.91 16 14 C 0.17 7.71 4.12 86.35 0.36 8.07 16 15 N -0.61 -28.79 2.56 -697.53 -1.79 -30.58 16 16 C -0.26 -13.32 9.65 84.03 0.81 -12.51 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 19 N -0.94 -54.15 11.14 21.65 0.24 -53.91 16 20 Si 0.96 43.41 29.59 68.60 2.03 45.44 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.10 3.87 6.74 86.36 0.58 4.46 16 25 C 0.05 1.56 6.60 72.08 0.48 2.04 16 26 O -0.38 -12.39 9.97 -148.98 -1.49 -13.87 16 27 H 0.08 1.77 6.87 -2.39 -0.02 1.75 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.06 6.11 -2.38 -0.01 2.05 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.42 7.90 5.27 -92.71 -0.49 7.41 16 33 H 0.19 2.06 6.42 -2.91 -0.02 2.04 16 34 H 0.21 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.16 3.14 7.73 -2.91 -0.02 3.11 16 36 H 0.07 3.50 6.14 -2.38 -0.01 3.49 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.25 14.09 8.31 -92.72 -0.77 13.32 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 41 H 0.06 1.73 6.25 -2.39 -0.01 1.72 16 42 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -68.16 347.71 2.32 -65.85 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.58 Total: 15.84 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 6.42 Total: 21.61 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -5.94 Total: -113.46 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.55 Total: -33.98 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.16 2.32 -65.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107860545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.729 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds