Wall clock time and date at job start Tue Mar 31 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99822 * 2 1 4 4 N 1.34777 * 119.99968 * 180.02562 * 2 1 3 5 5 C 1.48138 * 127.83787 * 359.97438 * 4 2 1 6 6 C 1.54397 * 104.61620 * 219.60243 * 5 4 2 7 7 H 1.09005 * 110.33762 * 95.00277 * 6 5 4 8 8 C 1.52994 * 110.43407 * 217.21397 * 6 5 4 9 9 F 1.39897 * 109.47073 * 175.58741 * 8 6 5 10 10 F 1.39899 * 109.47631 * 295.59388 * 8 6 5 11 11 F 1.39911 * 109.46924 * 55.59297 * 8 6 5 12 12 C 1.54281 * 104.95899 * 336.13356 * 6 5 4 13 13 H 1.09001 * 110.34385 * 241.02244 * 12 6 5 14 14 N 1.46906 * 110.34109 * 118.86851 * 12 6 5 15 15 C 1.46902 * 110.99573 * 154.99982 * 14 12 6 16 16 C 1.50707 * 109.46656 * 179.97438 * 15 14 12 17 17 O 1.21294 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99715 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99714 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00117 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99954 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47073 * 90.00485 * 23 21 19 25 25 H 1.48501 * 109.47297 * 209.99946 * 23 21 19 26 26 H 1.48496 * 109.47417 * 330.00214 * 23 21 19 27 27 C 1.48147 * 127.83289 * 179.97438 * 4 2 1 28 28 H 1.09007 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46656 * 299.99202 * 1 2 3 30 30 H 1.09001 * 109.47608 * 59.99495 * 1 2 3 31 31 H 1.09004 * 110.40986 * 100.82498 * 5 4 2 32 32 H 1.08996 * 110.40975 * 338.38685 * 5 4 2 33 33 H 1.00896 * 111.00309 * 31.04394 * 14 12 6 34 34 H 1.08990 * 109.47358 * 299.99539 * 15 14 12 35 35 H 1.09004 * 109.47457 * 60.00221 * 15 14 12 36 36 H 0.96993 * 119.99587 * 0.02562 * 18 16 15 37 37 H 0.96997 * 120.00406 * 179.97438 * 22 21 19 38 38 H 1.08992 * 110.41153 * 21.61179 * 27 4 2 39 39 H 1.09001 * 110.40913 * 259.17396 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6221 -2.5391 -0.0006 6 6 2.5415 -3.3344 0.9512 7 1 2.1177 -3.3582 1.9552 8 6 2.7488 -4.7573 0.4286 9 9 3.6625 -5.4271 1.2494 10 9 1.5275 -5.4396 0.4363 11 9 3.2462 -4.7063 -0.8782 12 6 3.8776 -2.5630 0.9511 13 1 4.6817 -3.1977 0.5787 14 7 4.1911 -2.0844 2.3042 15 6 5.6378 -1.8933 2.4729 16 6 5.9200 -1.4025 3.8696 17 8 5.0060 -1.2294 4.6479 18 7 7.1883 -1.1568 4.2541 19 6 7.4451 -0.7108 5.5248 20 1 6.6311 -0.5560 6.2176 21 6 8.7525 -0.4571 5.9210 22 7 8.9987 -0.0291 7.1388 23 14 10.1602 -0.7242 4.7225 24 1 10.4098 0.5284 3.9649 25 1 11.3848 -1.1009 5.4733 26 1 9.8052 -1.8125 3.7766 27 6 3.6485 -1.3691 -0.0011 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6560 -2.9633 -1.0042 32 1 0.5993 -2.5330 0.3761 33 1 3.8253 -2.7127 3.0038 34 1 6.1509 -2.8409 2.3099 35 1 5.9939 -1.1583 1.7510 36 1 7.9192 -1.2956 3.6317 37 1 9.9114 0.1477 7.4156 38 1 4.1547 -0.4802 0.3751 39 1 3.9986 -1.6108 -1.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112030318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:30 Heat of formation + Delta-G solvation = -204.056345 kcal Electronic energy + Delta-G solvation = -28193.488473 eV Core-core repulsion = 23528.722498 eV Total energy + Delta-G solvation = -4664.765976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.51519 -47.99114 -47.96903 -40.35107 -38.63584 -37.89707 -34.89949 -33.88968 -32.17105 -31.66120 -30.60793 -28.55230 -26.53304 -26.09297 -24.20268 -22.81671 -21.03373 -19.95458 -19.38503 -18.93041 -18.58613 -18.44546 -17.89789 -17.30263 -16.33417 -15.94346 -15.64367 -15.27079 -14.98572 -14.94455 -14.84712 -14.53843 -14.39244 -14.20314 -14.10666 -14.04874 -13.91004 -13.71977 -13.16694 -12.99694 -12.93652 -12.56599 -12.42360 -12.31814 -12.14816 -11.89739 -11.79963 -11.73716 -11.55451 -11.17416 -10.60805 -10.06228 -9.99024 -9.59363 -9.11441 -8.66565 -8.35111 -8.19847 -6.32486 -3.84168 2.17772 2.47974 2.69477 3.01412 3.06612 3.14591 3.28537 3.33671 3.50412 3.69643 3.96607 4.08344 4.09373 4.16275 4.46416 4.52770 4.64641 4.76334 4.84032 5.00795 5.03344 5.15663 5.20054 5.21686 5.35947 5.51358 5.54686 5.69220 5.70559 5.81703 5.92610 6.82985 7.26561 7.30807 7.55523 7.97755 8.12010 8.57162 8.92884 9.40122 9.79104 10.80529 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003471 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.006031 B = 8064.583604 C = 9263.479043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.537 3.463 3 O -0.535 6.535 4 N -0.615 5.615 5 C 0.113 3.887 6 C -0.161 4.161 7 H 0.137 0.863 8 C 0.461 3.539 9 F -0.177 7.177 10 F -0.179 7.179 11 F -0.179 7.179 12 C 0.080 3.920 13 H 0.073 0.927 14 N -0.653 5.653 15 C 0.046 3.954 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.588 5.588 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.113 3.887 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.355 0.645 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.371 0.629 37 H 0.274 0.726 38 H 0.101 0.899 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -10.324 -19.831 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.327 3.673 3 O -0.411 6.411 4 N -0.350 5.350 5 C -0.011 4.011 6 C -0.181 4.181 7 H 0.155 0.845 8 C 0.406 3.594 9 F -0.158 7.158 10 F -0.161 7.161 11 F -0.160 7.160 12 C -0.031 4.031 13 H 0.091 0.909 14 N -0.287 5.287 15 C -0.087 4.087 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.227 5.227 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.011 4.011 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.176 0.824 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.888 -8.803 -19.277 25.898 hybrid contribution 1.667 -1.538 -0.729 2.383 sum -13.221 -10.341 -20.006 26.114 Atomic orbital electron populations 1.21896 0.91256 1.04242 1.05522 1.20420 0.90161 0.81602 0.75156 1.90770 1.70557 1.30206 1.49580 1.48839 1.07517 1.04743 1.73920 1.22269 0.97669 0.82343 0.98827 1.23739 1.00656 0.89402 1.04341 0.84496 1.20289 0.74104 0.89178 0.75796 1.93234 1.67542 1.82711 1.72323 1.93206 1.44246 1.82327 1.96301 1.93195 1.87807 1.96732 1.38311 1.22495 0.93526 0.94595 0.92516 0.90924 1.60191 1.13410 1.53667 1.01417 1.21813 0.88302 1.00609 0.97978 1.19579 0.83498 0.84760 0.88618 1.90574 1.43814 1.55933 1.54282 1.42181 1.06135 1.60552 1.13873 1.19428 0.95296 1.40749 0.87977 0.86261 1.25041 0.97433 0.97315 0.96303 1.69618 1.21127 1.44290 1.16952 0.86668 0.82760 0.78865 0.81071 1.19532 1.20159 1.19522 1.22455 0.81405 0.99268 0.97931 0.90589 0.88368 0.88651 0.89631 0.88260 0.82352 0.93200 0.89160 0.79657 0.91568 0.88028 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 36.01 0.37 -0.84 16 2 C 0.54 6.40 8.02 -10.98 -0.09 6.32 16 3 O -0.54 -9.10 17.37 5.56 0.10 -9.00 16 4 N -0.62 -6.23 3.32 -169.29 -0.56 -6.79 16 5 C 0.11 0.75 6.14 -2.41 -0.01 0.74 16 6 C -0.16 -1.26 2.75 -89.22 -0.25 -1.51 16 7 H 0.14 1.04 7.52 -51.93 -0.39 0.65 16 8 C 0.46 3.74 2.53 37.15 0.09 3.83 16 9 F -0.18 -1.76 16.92 2.25 0.04 -1.72 16 10 F -0.18 -1.44 17.17 2.25 0.04 -1.40 16 11 F -0.18 -1.48 16.05 2.25 0.04 -1.44 16 12 C 0.08 0.81 2.69 -66.29 -0.18 0.64 16 13 H 0.07 0.67 7.07 -51.93 -0.37 0.31 16 14 N -0.65 -9.21 5.92 -106.49 -0.63 -9.84 16 15 C 0.05 0.71 6.02 -4.97 -0.03 0.68 16 16 C 0.45 10.04 7.82 -10.98 -0.09 9.95 16 17 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 18 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 19 C -0.31 -8.65 10.16 -14.93 -0.15 -8.81 16 20 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 23 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.11 1.21 6.75 -2.39 -0.02 1.19 16 28 H 0.08 0.34 5.99 -51.92 -0.31 0.03 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.46 7.22 -51.93 -0.37 0.08 16 32 H 0.10 0.44 6.44 -51.93 -0.33 0.11 16 33 H 0.36 5.11 7.75 -39.29 -0.30 4.80 16 34 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 36 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 1.39 7.78 -51.93 -0.40 0.99 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -35.84 340.51 -4.59 -40.43 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.39 Total: 10.58 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -0.44 Total: 13.26 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.47 Total: -55.57 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.18 Total: -23.88 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.84 -4.59 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112030318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.631 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds