Wall clock time and date at job start Tue Mar 31 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30151 * 126.81805 * 2 1 4 4 O 1.20890 * 111.77905 * 179.97438 * 3 2 1 5 5 C 1.34229 * 111.66565 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.83358 * 179.97438 * 5 4 3 7 7 C 1.35997 * 106.33607 * 0.26450 * 5 4 3 8 8 N 1.40413 * 128.07384 * 179.70665 * 7 5 4 9 9 C 1.34780 * 119.99767 * 210.41209 * 8 7 5 10 10 O 1.21403 * 120.00040 * 4.92152 * 9 8 7 11 11 C 1.49323 * 120.00080 * 184.93584 * 9 8 7 12 12 O 1.21371 * 119.99835 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00372 * 179.97438 * 11 9 8 14 14 C 1.47423 * 125.64631 * 359.69100 * 13 11 9 15 15 C 1.55131 * 104.72421 * 155.81490 * 14 13 11 16 16 C 1.55155 * 101.48251 * 37.29377 * 15 14 13 17 17 O 1.42898 * 110.72043 * 82.69616 * 16 15 14 18 18 C 1.50697 * 110.87365 * 205.89698 * 16 15 14 19 19 H 1.08000 * 119.99853 * 355.06508 * 18 16 15 20 20 C 1.37871 * 120.00611 * 175.06478 * 18 16 15 21 21 N 1.31514 * 119.99774 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00526 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46746 * 59.99708 * 22 20 18 24 24 H 1.48498 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47051 * 300.00266 * 22 20 18 26 26 C 1.47022 * 125.64987 * 179.97438 * 13 11 9 27 27 H 1.09000 * 109.47157 * 84.39757 * 1 2 3 28 28 H 1.08993 * 109.47370 * 204.40303 * 1 2 3 29 29 H 1.09002 * 109.47075 * 324.40123 * 1 2 3 30 30 H 1.08998 * 109.47056 * 0.03434 * 6 5 4 31 31 H 1.09002 * 109.47075 * 120.02514 * 6 5 4 32 32 H 1.08998 * 109.47806 * 240.03147 * 6 5 4 33 33 H 0.96995 * 120.00152 * 30.39904 * 8 7 5 34 34 H 1.09001 * 110.36327 * 274.74803 * 14 13 11 35 35 H 1.09002 * 110.36890 * 37.06876 * 14 13 11 36 36 H 1.08994 * 111.19037 * 279.19092 * 15 14 13 37 37 H 1.09003 * 110.93541 * 155.28693 * 15 14 13 38 38 H 0.96700 * 114.00093 * 185.02268 * 17 16 15 39 39 H 0.97002 * 120.00425 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.88334 * 300.44129 * 26 13 11 41 41 H 1.09000 * 109.87869 * 61.45322 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7282 0.0005 5 6 3.6093 -0.6051 0.0015 6 6 4.9117 -1.3633 0.0018 7 6 2.3571 -1.1357 -0.0045 8 7 1.9911 -2.4912 -0.0117 9 6 0.8453 -2.8767 -0.6076 10 8 0.1747 -2.0671 -1.2148 11 6 0.4004 -4.2994 -0.5206 12 8 1.0709 -5.1089 0.0863 13 7 -0.7456 -4.6848 -1.1160 14 6 -1.6555 -3.8088 -1.8763 15 6 -2.4151 -4.7649 -2.8332 16 6 -2.6019 -6.0163 -1.9353 17 8 -3.7376 -5.8613 -1.0819 18 6 -2.7325 -7.2629 -2.7720 19 1 -2.7698 -7.1890 -3.8488 20 6 -2.8044 -8.4977 -2.1629 21 7 -2.7585 -8.5878 -0.8517 22 14 -2.9655 -10.0429 -3.2002 23 1 -1.7929 -10.1565 -4.1044 24 1 -3.0233 -11.2315 -2.3119 25 1 -4.2087 -9.9689 -4.0088 26 6 -1.2984 -6.0471 -1.1099 27 1 -0.3633 0.1003 -1.0228 28 1 -0.3634 -0.9358 0.4245 29 1 -0.3633 0.8356 0.5982 30 1 5.7427 -0.6580 0.0017 31 1 4.9671 -1.9898 0.8920 32 1 4.9673 -1.9904 -0.8880 33 1 2.5629 -3.1502 0.4120 34 1 -2.3523 -3.3098 -1.2029 35 1 -1.0867 -3.0748 -2.4470 36 1 -1.8155 -5.0007 -3.7123 37 1 -3.3782 -4.3433 -3.1213 38 1 -3.8539 -6.5816 -0.4472 39 1 -2.8094 -9.4565 -0.4231 40 1 -0.5879 -6.7375 -1.5644 41 1 -1.5122 -6.3558 -0.0866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118206445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:37 Heat of formation + Delta-G solvation = -43.411297 kcal Electronic energy + Delta-G solvation = -27931.738543 eV Core-core repulsion = 23815.795400 eV Total energy + Delta-G solvation = -4115.943143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.12021 -40.72449 -38.81111 -37.38527 -36.05616 -34.38965 -34.12229 -32.59681 -32.30887 -30.27212 -28.71001 -28.12118 -27.86212 -26.17136 -24.53302 -22.87408 -21.58042 -21.09001 -19.82608 -19.42908 -18.01561 -17.91303 -17.39984 -17.24644 -16.41176 -16.02447 -15.80505 -15.39133 -14.80855 -14.53946 -14.36590 -14.03075 -13.64700 -13.33923 -13.28270 -13.11048 -13.02242 -13.01010 -12.65338 -12.63082 -12.35725 -11.87707 -11.68992 -11.60633 -11.25021 -11.10285 -10.88407 -10.86539 -10.68569 -10.56138 -10.25660 -9.80041 -9.44651 -9.28000 -8.74206 -8.70182 -8.42912 -8.16022 -6.36323 -4.45113 1.01316 1.52635 2.06592 2.22300 2.93814 3.18306 3.24066 3.26114 3.37379 3.64234 4.12282 4.16390 4.21408 4.42002 4.65269 4.91790 4.97017 5.06729 5.15021 5.38738 5.40781 5.52354 5.62007 5.71198 5.72437 5.77435 5.93180 6.04083 6.11417 6.23885 6.41576 6.63561 6.69715 6.73729 6.86010 7.10878 7.23341 7.60389 7.65067 7.83413 7.93884 8.07187 8.21958 8.58715 9.21035 9.30210 10.71498 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002998 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.441549 B = 9336.539801 C = 9907.984731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.038 3.962 3 N -0.359 5.359 4 O 0.105 5.895 5 C -0.057 4.057 6 C -0.072 4.072 7 C 0.035 3.965 8 N -0.618 5.618 9 C 0.509 3.491 10 O -0.488 6.488 11 C 0.511 3.489 12 O -0.534 6.534 13 N -0.571 5.571 14 C 0.096 3.904 15 C -0.120 4.120 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.538 4.538 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.100 3.900 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.426 0.574 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.382 0.618 39 H 0.272 0.728 40 H 0.074 0.926 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.195 12.328 2.334 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.123 4.123 3 N -0.066 5.066 4 O 0.042 5.958 5 C -0.124 4.124 6 C -0.129 4.129 7 C -0.064 4.064 8 N -0.268 5.268 9 C 0.292 3.708 10 O -0.360 6.360 11 C 0.292 3.708 12 O -0.413 6.413 13 N -0.303 5.303 14 C -0.026 4.026 15 C -0.158 4.158 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.020 4.020 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.771 14.185 2.050 17.928 hybrid contribution 0.253 -2.600 0.137 2.616 sum 11.024 11.584 2.187 16.140 Atomic orbital electron populations 1.20255 0.84903 1.02614 1.03996 1.23462 0.99366 0.87099 1.02358 1.73802 0.89114 1.23300 1.20335 1.84847 1.21391 1.21193 1.68376 1.23898 0.96958 0.84292 1.07270 1.20323 0.89802 0.98667 1.04118 1.18085 0.92022 0.86016 1.10230 1.42330 1.23836 1.04702 1.55979 1.20663 0.80743 0.90038 0.79349 1.90779 1.53443 1.53454 1.38348 1.19176 0.82390 0.87214 0.81990 1.90756 1.54357 1.53360 1.42859 1.48720 1.19503 1.13637 1.48397 1.22744 0.92184 0.93276 0.94404 1.22854 0.99868 0.95775 0.97323 1.19511 0.81362 0.92000 0.86333 1.86132 1.48907 1.51266 1.52840 1.21461 1.52070 0.90382 0.93741 0.91425 1.25077 0.93311 0.99613 0.95247 1.69673 1.49374 1.26058 1.08271 0.86436 0.78930 0.81446 0.79980 1.19992 1.21052 1.19938 1.23301 0.97757 0.78553 1.02417 0.89006 0.90361 0.91533 0.89446 0.89199 0.89184 0.73546 0.91102 0.89435 0.90369 0.90230 0.76747 0.91851 0.90731 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 8.43 36.00 0.30 -0.46 16 2 C 0.04 0.51 7.02 -81.92 -0.57 -0.06 16 3 N -0.36 -4.90 12.06 33.58 0.40 -4.50 16 4 O 0.10 1.24 11.20 16.68 0.19 1.43 16 5 C -0.06 -0.58 7.52 -35.11 -0.26 -0.85 16 6 C -0.07 -0.41 10.45 36.01 0.38 -0.04 16 7 C 0.04 0.44 6.79 -83.34 -0.57 -0.13 16 8 N -0.62 -7.71 5.45 -10.09 -0.05 -7.77 16 9 C 0.51 7.75 7.17 -11.64 -0.08 7.67 16 10 O -0.49 -7.70 9.28 5.45 0.05 -7.65 16 11 C 0.51 9.32 7.91 -11.65 -0.09 9.22 16 12 O -0.53 -10.69 16.81 5.48 0.09 -10.60 16 13 N -0.57 -11.18 3.32 -170.94 -0.57 -11.74 16 14 C 0.10 1.71 6.07 -2.41 -0.01 1.70 16 15 C -0.12 -2.34 6.24 -24.46 -0.15 -2.49 16 16 C 0.25 5.74 0.85 -89.94 -0.08 5.67 16 17 O -0.58 -14.05 13.07 -35.23 -0.46 -14.51 16 18 C -0.54 -13.54 8.13 -34.44 -0.28 -13.82 16 19 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 20 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 21 N -0.90 -22.85 10.96 55.43 0.61 -22.25 16 22 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.10 2.28 5.23 -3.06 -0.02 2.26 16 27 H 0.09 1.20 7.47 -51.93 -0.39 0.81 16 28 H 0.08 1.05 6.38 -51.93 -0.33 0.72 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.43 4.53 8.30 -40.82 -0.34 4.19 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 36 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.38 9.39 7.45 45.56 0.34 9.73 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.07 1.83 7.81 -51.93 -0.41 1.42 16 41 H 0.07 1.80 7.92 -51.93 -0.41 1.39 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -28.58 344.55 -5.46 -34.04 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.35 Total: 13.20 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -1.53 Total: 10.37 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.39 Total: -46.26 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.13 Total: -31.33 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.58 -5.46 -34.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118206445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.370 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds