Wall clock time and date at job start Tue Mar 31 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30151 * 126.81805 * 2 1 4 4 O 1.20890 * 111.77905 * 179.97438 * 3 2 1 5 5 C 1.34229 * 111.66565 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.83358 * 179.97438 * 5 4 3 7 7 C 1.35997 * 106.33607 * 0.26450 * 5 4 3 8 8 N 1.40413 * 128.07384 * 179.70665 * 7 5 4 9 9 C 1.34780 * 119.99767 * 210.41209 * 8 7 5 10 10 O 1.21403 * 120.00040 * 4.92152 * 9 8 7 11 11 C 1.49323 * 120.00080 * 184.93584 * 9 8 7 12 12 O 1.21371 * 119.99835 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00372 * 179.97438 * 11 9 8 14 14 C 1.47423 * 125.64631 * 359.69100 * 13 11 9 15 15 C 1.55131 * 104.72421 * 155.81490 * 14 13 11 16 16 C 1.55155 * 101.48251 * 37.29377 * 15 14 13 17 17 O 1.42898 * 110.72043 * 82.69616 * 16 15 14 18 18 C 1.50697 * 110.87365 * 205.89698 * 16 15 14 19 19 H 1.08000 * 119.99853 * 355.06508 * 18 16 15 20 20 C 1.37871 * 120.00611 * 175.06478 * 18 16 15 21 21 N 1.31514 * 119.99774 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00526 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46746 * 59.99708 * 22 20 18 24 24 H 1.48498 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47051 * 300.00266 * 22 20 18 26 26 C 1.47022 * 125.64987 * 179.97438 * 13 11 9 27 27 H 1.09000 * 109.47157 * 84.39757 * 1 2 3 28 28 H 1.08993 * 109.47370 * 204.40303 * 1 2 3 29 29 H 1.09002 * 109.47075 * 324.40123 * 1 2 3 30 30 H 1.08998 * 109.47056 * 0.03434 * 6 5 4 31 31 H 1.09002 * 109.47075 * 120.02514 * 6 5 4 32 32 H 1.08998 * 109.47806 * 240.03147 * 6 5 4 33 33 H 0.96995 * 120.00152 * 30.39904 * 8 7 5 34 34 H 1.09001 * 110.36327 * 274.74803 * 14 13 11 35 35 H 1.09002 * 110.36890 * 37.06876 * 14 13 11 36 36 H 1.08994 * 111.19037 * 279.19092 * 15 14 13 37 37 H 1.09003 * 110.93541 * 155.28693 * 15 14 13 38 38 H 0.96700 * 114.00093 * 185.02268 * 17 16 15 39 39 H 0.97002 * 120.00425 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.88334 * 300.44129 * 26 13 11 41 41 H 1.09000 * 109.87869 * 61.45322 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7282 0.0005 5 6 3.6093 -0.6051 0.0015 6 6 4.9117 -1.3633 0.0018 7 6 2.3571 -1.1357 -0.0045 8 7 1.9911 -2.4912 -0.0117 9 6 0.8453 -2.8767 -0.6076 10 8 0.1747 -2.0671 -1.2148 11 6 0.4004 -4.2994 -0.5206 12 8 1.0709 -5.1089 0.0863 13 7 -0.7456 -4.6848 -1.1160 14 6 -1.6555 -3.8088 -1.8763 15 6 -2.4151 -4.7649 -2.8332 16 6 -2.6019 -6.0163 -1.9353 17 8 -3.7376 -5.8613 -1.0819 18 6 -2.7325 -7.2629 -2.7720 19 1 -2.7698 -7.1890 -3.8488 20 6 -2.8044 -8.4977 -2.1629 21 7 -2.7585 -8.5878 -0.8517 22 14 -2.9655 -10.0429 -3.2002 23 1 -1.7929 -10.1565 -4.1044 24 1 -3.0233 -11.2315 -2.3119 25 1 -4.2087 -9.9689 -4.0088 26 6 -1.2984 -6.0471 -1.1099 27 1 -0.3633 0.1003 -1.0228 28 1 -0.3634 -0.9358 0.4245 29 1 -0.3633 0.8356 0.5982 30 1 5.7427 -0.6580 0.0017 31 1 4.9671 -1.9898 0.8920 32 1 4.9673 -1.9904 -0.8880 33 1 2.5629 -3.1502 0.4120 34 1 -2.3523 -3.3098 -1.2029 35 1 -1.0867 -3.0748 -2.4470 36 1 -1.8155 -5.0007 -3.7123 37 1 -3.3782 -4.3433 -3.1213 38 1 -3.8539 -6.5816 -0.4472 39 1 -2.8094 -9.4565 -0.4231 40 1 -0.5879 -6.7375 -1.5644 41 1 -1.5122 -6.3558 -0.0866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118206445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:37 Heat of formation + Delta-G solvation = -64.608437 kcal Electronic energy + Delta-G solvation = -27932.657720 eV Core-core repulsion = 23815.795400 eV Total energy + Delta-G solvation = -4116.862320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.07828 -42.04899 -40.26577 -38.99408 -37.18417 -36.04373 -35.07967 -34.23925 -33.47946 -31.91133 -29.76219 -29.68173 -28.71507 -27.74275 -26.02414 -24.27780 -22.81754 -22.10257 -21.49584 -20.70931 -19.16864 -19.02612 -18.95459 -18.68019 -17.73631 -17.44775 -17.12147 -16.85090 -16.37563 -16.01973 -15.82266 -14.97541 -14.82521 -14.77246 -14.73187 -14.35519 -14.11541 -14.03072 -13.96226 -13.56266 -13.49214 -13.41402 -13.33977 -12.84789 -12.73109 -12.57794 -12.52659 -12.35878 -12.30221 -12.07541 -11.87479 -11.19365 -10.78060 -10.75208 -10.56993 -10.31377 -9.81767 -9.61125 -8.26977 -6.42505 -0.05807 0.44600 0.89725 1.13221 1.44390 1.45573 1.52914 1.97800 2.03114 2.37013 2.45101 2.99428 3.05701 3.20200 3.36874 3.73562 3.77889 4.02726 4.13738 4.22134 4.32995 4.37300 4.60144 4.63576 4.65376 4.68588 4.72010 4.82495 4.94067 5.02026 5.07437 5.09569 5.14751 5.20104 5.31710 5.44210 5.72542 5.76807 6.04241 6.29110 6.47002 6.64812 6.76205 7.16034 7.27141 7.35096 8.79055 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002998 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.441549 B = 9336.539801 C = 9907.984731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.021 3.979 3 N -0.379 5.379 4 O 0.106 5.894 5 C -0.026 4.026 6 C -0.075 4.075 7 C 0.005 3.995 8 N -0.599 5.599 9 C 0.518 3.482 10 O -0.494 6.494 11 C 0.511 3.489 12 O -0.554 6.554 13 N -0.579 5.579 14 C 0.107 3.893 15 C -0.115 4.115 16 C 0.234 3.766 17 O -0.587 6.587 18 C -0.559 4.559 19 H 0.067 0.933 20 C 0.030 3.970 21 N -0.913 5.913 22 Si 0.962 3.038 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.119 3.881 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.435 0.565 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.376 0.624 39 H 0.271 0.729 40 H 0.049 0.951 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 13.167 1.835 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.139 4.139 3 N -0.086 5.086 4 O 0.044 5.956 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.094 4.094 8 N -0.250 5.250 9 C 0.300 3.700 10 O -0.367 6.367 11 C 0.294 3.706 12 O -0.434 6.434 13 N -0.311 5.311 14 C -0.015 4.015 15 C -0.153 4.153 16 C 0.194 3.806 17 O -0.395 6.395 18 C -0.597 4.597 19 H 0.085 0.915 20 C -0.172 4.172 21 N -0.552 5.552 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.003 4.003 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.276 0.724 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.374 15.059 1.555 19.553 hybrid contribution -0.122 -2.820 0.341 2.843 sum 12.252 12.240 1.896 17.421 Atomic orbital electron populations 1.20187 0.84827 1.02574 1.03769 1.23688 0.99846 0.87715 1.02615 1.73797 0.89683 1.23691 1.21478 1.84834 1.20755 1.22110 1.67934 1.24651 0.97835 0.83515 1.03303 1.20650 0.88006 0.99042 1.05517 1.18148 0.92864 0.85367 1.12993 1.42019 1.22795 1.05208 1.54993 1.19899 0.81725 0.88231 0.80115 1.90781 1.53961 1.52901 1.39057 1.19712 0.81514 0.88565 0.80824 1.90737 1.54793 1.54513 1.43401 1.48696 1.20416 1.12656 1.49364 1.22743 0.91957 0.92740 0.94015 1.22855 1.00848 0.94360 0.97222 1.19704 0.80984 0.93303 0.86640 1.86124 1.49529 1.50954 1.52855 1.21771 1.52321 0.91552 0.94026 0.91493 1.25760 0.93078 1.02128 0.96208 1.69770 1.49710 1.26445 1.09304 0.85544 0.78848 0.78301 0.78574 1.19676 1.20935 1.19640 1.22776 0.97252 0.79931 1.00350 0.89537 0.91289 0.90371 0.87271 0.87156 0.88085 0.72442 0.90853 0.87503 0.89628 0.89192 0.77433 0.91940 0.93271 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.39 8.43 71.23 0.60 -0.79 16 2 C 0.02 0.56 7.02 43.70 0.31 0.86 16 3 N -0.38 -9.84 12.06 -48.89 -0.59 -10.43 16 4 O 0.11 2.28 11.20 69.87 0.78 3.06 16 5 C -0.03 -0.46 7.52 25.16 0.19 -0.27 16 6 C -0.08 -0.58 10.45 71.24 0.74 0.17 16 7 C 0.00 0.11 6.79 38.14 0.26 0.37 16 8 N -0.60 -13.94 5.45 -304.16 -1.66 -15.60 16 9 C 0.52 15.19 7.17 87.23 0.63 15.81 16 10 O -0.49 -14.95 9.28 -3.41 -0.03 -14.98 16 11 C 0.51 18.45 7.91 87.23 0.69 19.14 16 12 O -0.55 -22.17 16.81 -3.31 -0.06 -22.22 16 13 N -0.58 -22.69 3.32 -813.07 -2.70 -25.40 16 14 C 0.11 3.70 6.07 86.93 0.53 4.23 16 15 C -0.12 -4.38 6.24 32.06 0.20 -4.18 16 16 C 0.23 10.93 0.85 -10.35 -0.01 10.92 16 17 O -0.59 -28.70 13.07 -148.98 -1.95 -30.65 16 18 C -0.56 -28.30 8.13 25.60 0.21 -28.09 16 19 H 0.07 3.31 7.78 -2.91 -0.02 3.29 16 20 C 0.03 1.50 5.28 84.65 0.45 1.94 16 21 N -0.91 -47.52 10.96 21.44 0.24 -47.29 16 22 Si 0.96 40.63 29.54 68.60 2.03 42.65 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C 0.12 5.55 5.23 86.73 0.45 6.00 16 27 H 0.09 2.20 7.47 -2.39 -0.02 2.18 16 28 H 0.07 1.81 6.38 -2.39 -0.02 1.79 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.43 8.40 8.30 -92.71 -0.77 7.63 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.11 3.33 6.14 -2.39 -0.01 3.31 16 36 H 0.09 3.11 8.04 -2.39 -0.02 3.09 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.38 19.05 7.45 -74.06 -0.55 18.49 16 39 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 40 H 0.05 2.49 7.81 -2.39 -0.02 2.48 16 41 H 0.05 2.38 7.92 -2.39 -0.02 2.36 16 Total: -1.00 -61.74 344.55 1.09 -60.65 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.22 Total: 34.08 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 5.24 Total: 26.12 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -4.71 Total: -98.71 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -1.25 Total: -64.79 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -61.74 1.09 -60.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118206445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.955 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds