Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37983 * 120.05033 * 2 1 4 4 C 1.38299 * 120.17602 * 180.25695 * 3 2 1 5 5 C 1.38592 * 120.26549 * 359.44604 * 4 3 2 6 6 F 1.35095 * 119.95406 * 180.27271 * 5 4 3 7 7 C 1.38168 * 120.08878 * 0.30466 * 5 4 3 8 8 C 1.39551 * 120.04556 * 179.73009 * 2 1 3 9 9 C 1.47857 * 120.13369 * 359.97438 * 8 2 1 10 10 O 1.21548 * 119.99685 * 353.76464 * 9 8 2 11 11 N 1.34773 * 119.99741 * 173.76369 * 9 8 2 12 12 C 1.46508 * 119.99654 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46919 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.46803 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99910 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47258 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99664 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00008 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99977 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99890 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00264 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47053 * 59.99795 * 23 21 19 25 25 H 1.48502 * 109.47069 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47000 * 299.99761 * 23 21 19 27 27 H 1.09005 * 109.46783 * 263.67573 * 1 2 3 28 28 H 1.09003 * 109.47387 * 23.66846 * 1 2 3 29 29 H 1.08997 * 109.47715 * 143.67103 * 1 2 3 30 30 H 1.08007 * 119.91231 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.86864 * 179.72795 * 4 3 2 32 32 H 1.08005 * 120.08477 * 179.97438 * 7 5 4 33 33 H 0.96995 * 120.00374 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46702 * 299.99979 * 12 11 9 35 35 H 1.08998 * 109.47090 * 60.00079 * 12 11 9 36 36 H 1.09004 * 109.47306 * 299.99474 * 13 12 11 37 37 H 1.08998 * 109.47287 * 60.00063 * 13 12 11 38 38 H 1.00890 * 111.00208 * 56.04613 * 14 13 12 39 39 H 1.09004 * 109.46703 * 299.99548 * 15 14 13 40 40 H 1.09002 * 109.47428 * 59.99469 * 15 14 13 41 41 H 0.96997 * 120.00298 * 359.97438 * 18 16 15 42 42 H 0.96996 * 119.99940 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1944 0.0000 4 6 3.5809 1.1974 -0.0054 5 6 4.2821 0.0020 0.0008 6 9 5.6330 0.0123 0.0011 7 6 3.6014 -1.2004 0.0060 8 6 2.2057 -1.2080 0.0057 9 6 1.4704 -2.4908 0.0123 10 8 0.2604 -2.4970 0.1271 11 7 2.1420 -3.6529 -0.1090 12 6 1.4133 -4.9240 -0.1030 13 6 2.4038 -6.0803 -0.2536 14 7 1.6731 -7.3547 -0.2482 15 6 2.5942 -8.4902 -0.3907 16 6 1.8102 -9.7772 -0.3815 17 8 0.6030 -9.7511 -0.2671 18 7 2.4506 -10.9572 -0.4995 19 6 1.7373 -12.1280 -0.4917 20 1 0.6623 -12.1047 -0.3907 21 6 2.3974 -13.3446 -0.6138 22 7 3.7055 -13.3729 -0.7373 23 14 1.4256 -14.9398 -0.6025 24 1 0.4612 -14.9399 -1.7317 25 1 2.3566 -16.0876 -0.7471 26 1 0.6863 -15.0599 0.6798 27 1 -0.3633 -0.1132 1.0215 28 1 -0.3634 0.9412 -0.4126 29 1 -0.3634 -0.8279 -0.6088 30 1 1.6573 2.1294 0.0004 31 1 4.1167 2.1351 -0.0098 32 1 4.1478 -2.1319 0.0104 33 1 3.1075 -3.6479 -0.2010 34 1 0.8734 -5.0287 0.8381 35 1 0.7056 -4.9410 -0.9318 36 1 2.9441 -5.9757 -1.1946 37 1 3.1112 -6.0631 0.5754 38 1 0.9665 -7.3694 -0.9682 39 1 3.1365 -8.4023 -1.3322 40 1 3.3024 -8.4899 0.4379 41 1 3.4160 -10.9781 -0.5906 42 1 4.1663 -14.2222 -0.8221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132024201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = -114.902770 kcal Electronic energy + Delta-G solvation = -25254.723530 eV Core-core repulsion = 21148.053073 eV Total energy + Delta-G solvation = -4106.670457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93341 -41.47625 -40.17374 -39.33281 -37.50954 -36.04189 -35.41730 -33.30582 -33.23326 -32.69342 -30.43022 -28.05115 -27.39766 -25.78879 -24.85459 -23.35524 -22.50066 -21.72448 -21.10149 -19.92748 -19.31106 -17.94434 -17.80604 -17.28443 -16.96327 -16.81772 -16.70592 -16.62289 -16.49528 -16.26160 -15.86370 -15.40456 -15.14421 -14.96420 -14.78732 -14.59287 -14.33576 -14.15921 -13.90311 -13.51559 -13.32820 -13.02275 -12.92511 -12.82932 -12.72972 -12.62879 -12.44867 -12.43691 -12.39639 -12.12370 -11.50680 -10.82206 -10.37270 -10.34558 -10.10417 -10.02049 -9.59201 -9.39626 -8.46958 -5.95696 -0.36295 0.07739 1.39934 1.42058 1.52794 1.69277 1.90196 2.04987 2.30125 2.59816 2.97444 3.13166 3.20383 3.50458 3.61485 3.64683 3.83517 3.89222 4.02019 4.10413 4.20571 4.31224 4.44768 4.49674 4.53288 4.60691 4.71107 4.82539 4.86239 4.89543 4.91449 4.93495 5.09436 5.18406 5.34703 5.40743 5.51928 5.76638 5.83306 6.06132 6.31666 6.40872 6.59815 7.09240 7.12305 7.55832 8.11394 8.70051 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.001705 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.172402 B =16413.711705 C =17365.472597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 C -0.096 4.096 4 C -0.116 4.116 5 C 0.070 3.930 6 F -0.143 7.143 7 C -0.115 4.115 8 C -0.127 4.127 9 C 0.554 3.446 10 O -0.559 6.559 11 N -0.710 5.710 12 C 0.129 3.871 13 C 0.057 3.943 14 N -0.685 5.685 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.347 0.653 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 31.188 -0.306 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.045 4.045 3 C -0.113 4.113 4 C -0.135 4.135 5 C 0.051 3.949 6 F -0.121 7.121 7 C -0.135 4.135 8 C -0.130 4.130 9 C 0.342 3.658 10 O -0.439 6.439 11 N -0.363 5.363 12 C 0.005 3.995 13 C -0.072 4.072 14 N -0.318 5.318 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.198 1.198 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.955 30.947 0.512 31.203 hybrid contribution 0.986 -1.163 -0.935 1.788 sum 4.940 29.785 -0.423 30.195 Atomic orbital electron populations 1.21027 0.89653 1.03617 1.03189 1.20349 0.97539 0.91874 0.94734 1.21245 0.93070 0.98411 0.98616 1.21698 0.95102 0.97970 0.98702 1.17682 0.76998 0.94927 1.05274 1.91520 1.29026 1.97420 1.94172 1.21387 0.93164 0.98706 1.00222 1.19536 0.92926 0.93088 1.07494 1.18439 0.86840 0.84264 0.76227 1.90760 1.15026 1.87503 1.50619 1.45690 1.11715 1.05067 1.73875 1.21097 0.94599 0.81507 1.02342 1.22084 0.95570 0.87029 1.02557 1.59886 1.15121 1.00970 1.55834 1.21529 0.94229 0.87571 1.03116 1.20925 0.88477 0.86098 0.82264 1.90501 1.16502 1.87820 1.56339 1.41912 1.09891 1.04779 1.64340 1.19632 0.93002 0.84448 1.49481 0.90384 1.26032 0.96812 1.02161 0.96210 1.69659 1.08017 1.28703 1.49594 0.84993 0.77775 0.76700 0.78898 1.19725 1.19420 1.19818 0.91115 0.89730 0.90869 0.81299 0.81690 0.82639 0.74839 0.91884 0.92037 0.92507 0.88852 0.83475 0.90933 0.87303 0.76852 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.73 71.24 0.62 -1.25 16 2 C -0.04 -0.66 5.91 -19.61 -0.12 -0.77 16 3 C -0.10 -0.90 9.66 22.22 0.21 -0.69 16 4 C -0.12 -1.09 10.02 22.37 0.22 -0.86 16 5 C 0.07 0.91 7.29 22.34 0.16 1.07 16 6 F -0.14 -2.11 17.26 44.97 0.78 -1.34 16 7 C -0.12 -1.52 9.50 22.57 0.21 -1.30 16 8 C -0.13 -2.14 5.87 -20.09 -0.12 -2.26 16 9 C 0.55 11.83 7.70 86.79 0.67 12.50 16 10 O -0.56 -15.84 13.34 -3.87 -0.05 -15.89 16 11 N -0.71 -12.18 5.51 -465.95 -2.57 -14.74 16 12 C 0.13 2.73 5.93 86.38 0.51 3.24 16 13 C 0.06 1.12 5.80 86.30 0.50 1.62 16 14 N -0.69 -20.45 6.13 -517.91 -3.17 -23.62 16 15 C 0.07 2.19 6.17 85.56 0.53 2.71 16 16 C 0.43 20.44 7.82 87.66 0.69 21.12 16 17 O -0.63 -34.74 15.78 -3.05 -0.05 -34.79 16 18 N -0.57 -29.06 5.29 -307.00 -1.62 -30.68 16 19 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 23 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 0.86 8.04 -2.39 -0.02 0.84 16 29 H 0.07 1.56 5.85 -2.39 -0.01 1.54 16 30 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 31 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.16 1.35 6.45 -2.91 -0.02 1.33 16 33 H 0.41 4.47 6.55 -92.71 -0.61 3.86 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.35 11.04 8.43 -89.70 -0.76 10.29 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -73.60 364.61 0.00 -73.59 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -1.00 Total: 34.77 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.38 Total: 16.70 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -7.08 Total: -117.96 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.60 0.00 -73.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.310 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds