Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47310 * 299.99717 * 3 2 1 6 6 H 1.48504 * 109.47495 * 59.99731 * 3 2 1 7 7 C 1.38945 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99762 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99356 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46877 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47306 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21670 * 119.99916 * 0.02562 * 17 16 15 19 19 C 1.46816 * 119.99933 * 180.02562 * 17 16 15 20 20 C 1.36344 * 125.84954 * 179.72134 * 19 17 16 21 21 C 1.41306 * 107.01133 * 179.85091 * 20 19 17 22 22 C 1.47385 * 126.46496 * 180.13441 * 21 20 19 23 23 N 1.34779 * 120.00365 * 180.29686 * 22 21 20 24 24 O 1.21612 * 119.99924 * 0.29884 * 22 21 20 25 25 C 1.38212 * 107.07267 * 0.40400 * 21 20 19 26 26 N 1.34262 * 108.39721 * 359.75222 * 25 21 20 27 27 H 0.97000 * 125.39338 * 180.02562 * 26 25 21 28 28 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99722 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47181 * 60.00066 * 12 10 9 31 31 H 1.09001 * 109.46953 * 299.99448 * 12 10 9 32 32 H 1.00903 * 111.00181 * 303.95707 * 13 12 10 33 33 H 1.09001 * 109.46881 * 60.00316 * 14 13 12 34 34 H 1.08996 * 109.47393 * 299.99997 * 14 13 12 35 35 H 1.09001 * 109.47289 * 60.00085 * 15 14 13 36 36 H 1.09004 * 109.47261 * 300.00341 * 15 14 13 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 38 38 H 1.08004 * 126.49441 * 359.97438 * 20 19 17 39 39 H 0.97007 * 119.99495 * 0.02562 * 23 22 21 40 40 H 0.97000 * 120.00517 * 179.97438 * 23 22 21 41 41 H 1.07997 * 125.80136 * 179.78340 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 -0.0005 14 6 1.4981 -7.2708 -0.0005 15 6 2.5230 -8.4067 -0.0017 16 7 1.8247 -9.6946 -0.0023 17 6 2.5295 -10.8434 -0.0028 18 8 3.7458 -10.8109 -0.0023 19 6 1.8296 -12.1340 -0.0039 20 6 2.4205 -13.3627 -0.0099 21 6 1.3819 -14.3209 -0.0053 22 6 1.5418 -15.7860 -0.0062 23 7 0.4546 -16.5826 -0.0073 24 8 2.6547 -16.2763 -0.0060 25 6 0.1878 -13.6250 -0.0058 26 7 0.4632 -12.3109 -0.0050 27 1 -0.1955 -11.5988 -0.0048 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6175 -4.9204 -0.8902 31 1 0.6168 -4.9208 0.8897 32 1 2.8333 -5.9120 -0.7819 33 1 0.8730 -7.3451 -0.8903 34 1 0.8735 -7.3454 0.8896 35 1 3.1486 -8.3326 0.8879 36 1 3.1474 -8.3319 -0.8921 37 1 0.8550 -9.7204 -0.0023 38 1 3.4813 -13.5654 -0.0151 39 1 -0.4332 -16.1916 -0.0079 40 1 0.5598 -17.5469 -0.0084 41 1 -0.7991 -14.0636 -0.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135816333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -65.741355 kcal Electronic energy + Delta-G solvation = -24854.539930 eV Core-core repulsion = 20769.921234 eV Total energy + Delta-G solvation = -4084.618696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09104 -39.70240 -39.03739 -38.36435 -36.41706 -34.54252 -34.10014 -33.81616 -31.81501 -31.28903 -30.51969 -29.04290 -26.18834 -24.29480 -23.80708 -23.00411 -22.16635 -20.73179 -20.07247 -19.55525 -19.27980 -17.95370 -17.43215 -16.81014 -16.46107 -16.30016 -16.07542 -15.91144 -15.64191 -15.05537 -14.64785 -14.49451 -14.33624 -14.17768 -14.01293 -13.76090 -13.72745 -13.43797 -13.21624 -12.86378 -12.48713 -12.00185 -11.59789 -11.53506 -11.51826 -11.08532 -10.56707 -10.45039 -10.36815 -10.26231 -10.10990 -9.66299 -9.56317 -9.49214 -8.90429 -8.56772 -8.20241 -8.01008 -6.46148 -3.86979 0.90688 1.36562 2.35232 2.61815 2.87813 3.13799 3.17876 3.20786 3.24958 3.32476 3.84868 4.06274 4.20764 4.26482 4.35747 4.43272 4.67143 4.78851 4.88746 5.10562 5.20978 5.26064 5.28100 5.46825 5.64134 5.70413 5.79739 5.85624 5.88636 5.99281 6.17155 6.19472 6.36901 6.59242 6.93947 6.99244 7.09004 7.48617 7.51786 7.78915 7.92677 8.01914 8.56181 9.13704 9.49038 10.00165 10.71594 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.052538 B = 0.001468 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.824094 B =19074.383831 C =19579.432322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.581 6.581 12 C 0.053 3.947 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.729 5.729 17 C 0.587 3.413 18 O -0.517 6.517 19 C -0.057 4.057 20 C -0.043 4.043 21 C -0.238 4.238 22 C 0.593 3.407 23 N -0.856 5.856 24 O -0.543 6.543 25 C 0.073 3.927 26 N -0.524 5.524 27 H 0.422 0.578 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.354 0.646 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.392 0.608 38 H 0.160 0.840 39 H 0.398 0.602 40 H 0.404 0.596 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -28.665 -0.941 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.224 3.776 11 O -0.465 6.465 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.080 4.080 15 C -0.003 4.003 16 N -0.380 5.380 17 C 0.374 3.626 18 O -0.392 6.392 19 C -0.168 4.168 20 C -0.068 4.068 21 C -0.248 4.248 22 C 0.380 3.620 23 N -0.419 5.419 24 O -0.420 6.420 25 C -0.069 4.069 26 N -0.118 5.118 27 H 0.260 0.740 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.173 0.827 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.178 0.822 39 H 0.226 0.774 40 H 0.235 0.765 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.314 -28.382 -0.261 29.576 hybrid contribution -2.105 0.978 -0.889 2.485 sum -10.418 -27.405 -1.150 29.341 Atomic orbital electron populations 1.69615 1.05965 1.28102 1.50652 1.25262 0.95638 0.99759 0.97235 0.85793 0.79772 0.81041 0.77713 1.19153 1.20756 1.20718 1.19774 0.93459 0.82183 1.47501 0.87792 1.41860 1.09182 1.04603 1.64312 1.19762 0.88406 0.84679 0.84718 1.90541 1.13699 1.86989 1.55284 1.21669 0.94197 0.90835 1.01290 1.59912 1.18847 0.99349 1.51731 1.22072 0.95512 0.89543 1.00917 1.21355 0.94991 0.80024 1.03967 1.45774 1.09738 1.06217 1.76308 1.16983 0.86871 0.81894 0.76873 1.90905 1.12452 1.86515 1.49322 1.20160 0.82035 0.95439 1.19132 1.21138 1.00030 0.88651 0.97002 1.19607 0.93209 0.93054 1.18924 1.17387 0.84212 0.85545 0.74851 1.43680 1.08725 1.10512 1.79003 1.90850 1.24936 1.76157 1.50047 1.22413 0.99361 0.82829 1.02290 1.41756 1.07162 1.07858 1.55069 0.73986 0.91907 0.77479 0.93725 0.89472 0.82662 0.94982 0.90492 0.89701 0.90888 0.77450 0.82190 0.77435 0.76509 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 10 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 11 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.83 16 13 N -0.67 -9.94 6.12 -115.06 -0.70 -10.64 16 14 C 0.05 0.50 5.80 -3.83 -0.02 0.48 16 15 C 0.12 1.24 5.93 -4.04 -0.02 1.22 16 16 N -0.73 -5.82 5.55 -61.57 -0.34 -6.16 16 17 C 0.59 6.27 7.79 -12.79 -0.10 6.17 16 18 O -0.52 -7.87 16.86 5.22 0.09 -7.78 16 19 C -0.06 -0.47 6.99 -82.40 -0.58 -1.05 16 20 C -0.04 -0.42 10.37 -39.10 -0.41 -0.83 16 21 C -0.24 -1.77 6.13 -105.02 -0.64 -2.42 16 22 C 0.59 5.04 8.09 -12.54 -0.10 4.94 16 23 N -0.86 -2.99 8.86 30.42 0.27 -2.72 16 24 O -0.54 -7.30 17.76 5.27 0.09 -7.21 16 25 C 0.07 0.24 11.43 -16.50 -0.19 0.05 16 26 N -0.52 -1.95 5.91 -9.30 -0.05 -2.00 16 27 H 0.42 0.13 8.14 -40.82 -0.33 -0.20 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 1.68 7.55 -40.82 -0.31 1.38 16 38 H 0.16 1.82 8.06 -52.48 -0.42 1.39 16 39 H 0.40 -0.04 7.74 -40.82 -0.32 -0.36 16 40 H 0.40 1.10 8.93 -40.82 -0.36 0.73 16 41 H 0.18 -0.27 7.44 -52.49 -0.39 -0.66 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -39.39 366.25 -6.65 -46.05 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.83 Total: 10.55 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -2.42 Total: 11.52 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.17 Total: -58.92 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: 0.27 Total: -30.51 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.39 -6.65 -46.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135816333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.694 kcal (2) G-P(sol) polarization free energy of solvation -39.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds