Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47310 * 299.99717 * 3 2 1 6 6 H 1.48504 * 109.47495 * 59.99731 * 3 2 1 7 7 C 1.38945 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99762 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99356 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46877 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00351 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47306 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21670 * 119.99916 * 0.02562 * 17 16 15 19 19 C 1.46816 * 119.99933 * 180.02562 * 17 16 15 20 20 C 1.36344 * 125.84954 * 179.72134 * 19 17 16 21 21 C 1.41306 * 107.01133 * 179.85091 * 20 19 17 22 22 C 1.47385 * 126.46496 * 180.13441 * 21 20 19 23 23 N 1.34779 * 120.00365 * 180.29686 * 22 21 20 24 24 O 1.21612 * 119.99924 * 0.29884 * 22 21 20 25 25 C 1.38212 * 107.07267 * 0.40400 * 21 20 19 26 26 N 1.34262 * 108.39721 * 359.75222 * 25 21 20 27 27 H 0.97000 * 125.39338 * 180.02562 * 26 25 21 28 28 H 0.97000 * 120.00154 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99722 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47181 * 60.00066 * 12 10 9 31 31 H 1.09001 * 109.46953 * 299.99448 * 12 10 9 32 32 H 1.00903 * 111.00181 * 303.95707 * 13 12 10 33 33 H 1.09001 * 109.46881 * 60.00316 * 14 13 12 34 34 H 1.08996 * 109.47393 * 299.99997 * 14 13 12 35 35 H 1.09001 * 109.47289 * 60.00085 * 15 14 13 36 36 H 1.09004 * 109.47261 * 300.00341 * 15 14 13 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 38 38 H 1.08004 * 126.49441 * 359.97438 * 20 19 17 39 39 H 0.97007 * 119.99495 * 0.02562 * 23 22 21 40 40 H 0.97000 * 120.00517 * 179.97438 * 23 22 21 41 41 H 1.07997 * 125.80136 * 179.78340 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 -0.0005 14 6 1.4981 -7.2708 -0.0005 15 6 2.5230 -8.4067 -0.0017 16 7 1.8247 -9.6946 -0.0023 17 6 2.5295 -10.8434 -0.0028 18 8 3.7458 -10.8109 -0.0023 19 6 1.8296 -12.1340 -0.0039 20 6 2.4205 -13.3627 -0.0099 21 6 1.3819 -14.3209 -0.0053 22 6 1.5418 -15.7860 -0.0062 23 7 0.4546 -16.5826 -0.0073 24 8 2.6547 -16.2763 -0.0060 25 6 0.1878 -13.6250 -0.0058 26 7 0.4632 -12.3109 -0.0050 27 1 -0.1955 -11.5988 -0.0048 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6175 -4.9204 -0.8902 31 1 0.6168 -4.9208 0.8897 32 1 2.8333 -5.9120 -0.7819 33 1 0.8730 -7.3451 -0.8903 34 1 0.8735 -7.3454 0.8896 35 1 3.1486 -8.3326 0.8879 36 1 3.1474 -8.3319 -0.8921 37 1 0.8550 -9.7204 -0.0023 38 1 3.4813 -13.5654 -0.0151 39 1 -0.4332 -16.1916 -0.0079 40 1 0.5598 -17.5469 -0.0084 41 1 -0.7991 -14.0636 -0.0062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135816333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -104.243188 kcal Electronic energy + Delta-G solvation = -24856.209494 eV Core-core repulsion = 20769.921234 eV Total energy + Delta-G solvation = -4086.288261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62784 -40.51494 -40.13995 -39.69855 -37.51716 -36.02660 -35.33547 -34.64880 -33.27316 -32.34459 -31.33915 -29.92651 -27.68812 -25.77863 -24.42117 -23.83417 -23.02025 -21.33975 -21.10617 -20.63646 -20.12562 -19.90454 -18.00003 -17.72644 -17.36508 -17.27379 -17.12862 -16.76693 -16.51148 -16.41050 -15.87840 -15.84549 -15.36109 -15.21449 -14.99916 -14.74584 -14.59746 -14.50949 -14.21308 -13.97747 -13.53193 -13.40563 -13.30645 -12.94539 -12.61007 -12.44372 -12.40080 -12.12051 -11.51774 -11.46360 -11.20372 -10.63102 -10.37179 -10.35667 -10.17940 -10.01398 -9.41956 -9.38030 -8.47439 -5.95736 0.35141 0.76557 1.36433 1.42430 1.56045 1.80152 2.00473 2.05431 2.13699 2.30035 2.56429 2.76477 3.02390 3.20321 3.54218 3.74416 3.86984 3.90846 4.08371 4.09954 4.28074 4.31785 4.44912 4.50912 4.61633 4.78254 4.87272 4.88647 4.93357 5.17981 5.33491 5.41368 5.52314 5.84507 5.98764 6.07236 6.30106 6.31667 6.45035 6.60204 6.62506 7.04041 7.12984 7.47177 7.56372 8.12291 8.70012 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.052538 B = 0.001468 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.824094 B =19074.383831 C =19579.432322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.688 5.688 14 C 0.060 3.940 15 C 0.126 3.874 16 N -0.707 5.707 17 C 0.585 3.415 18 O -0.576 6.576 19 C -0.069 4.069 20 C -0.073 4.073 21 C -0.271 4.271 22 C 0.588 3.412 23 N -0.828 5.828 24 O -0.609 6.609 25 C 0.129 3.871 26 N -0.501 5.501 27 H 0.444 0.556 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.346 0.654 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.415 0.585 38 H 0.124 0.876 39 H 0.419 0.581 40 H 0.410 0.590 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 -29.157 -1.025 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.063 4.063 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.002 3.998 16 N -0.359 5.359 17 C 0.374 3.626 18 O -0.455 6.455 19 C -0.180 4.180 20 C -0.099 4.099 21 C -0.280 4.280 22 C 0.376 3.624 23 N -0.392 5.392 24 O -0.492 6.492 25 C -0.016 4.016 26 N -0.097 5.097 27 H 0.286 0.714 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.142 0.858 39 H 0.251 0.749 40 H 0.242 0.758 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -12.967 -28.862 -0.342 31.643 hybrid contribution -0.787 1.032 -0.860 1.557 sum -13.754 -27.830 -1.202 31.066 Atomic orbital electron populations 1.69659 1.06705 1.29231 1.50337 1.25978 0.96528 1.02240 0.96244 0.84906 0.78012 0.77284 0.78354 1.20017 1.19532 1.19610 1.19693 0.92685 0.84162 1.49935 0.90531 1.41914 1.09365 1.04632 1.65021 1.20990 0.88286 0.86374 0.82207 1.90512 1.16110 1.88001 1.56651 1.21520 0.93677 0.87366 1.03712 1.59871 1.19445 1.00912 1.51895 1.22068 0.95098 0.86621 1.03148 1.21121 0.95167 0.81281 1.02223 1.45466 1.10726 1.04664 1.75054 1.17326 0.86333 0.83112 0.75877 1.90874 1.15133 1.87386 1.52152 1.19550 0.84080 0.93413 1.20937 1.21074 0.99476 0.90749 0.98633 1.19585 0.94230 0.92496 1.21719 1.17644 0.84212 0.86339 0.74201 1.43425 1.08575 1.10549 1.76655 1.90816 1.27634 1.77234 1.53492 1.23228 1.00121 0.81737 0.96470 1.41677 1.05527 1.08985 1.53543 0.71360 0.91275 0.76806 0.90760 0.87138 0.83537 0.92113 0.88496 0.92138 0.92311 0.74780 0.85794 0.74861 0.75809 0.73876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.47 29.55 68.60 2.03 44.49 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.47 5.29 -306.98 -1.62 -30.09 16 10 C 0.43 19.95 7.82 87.66 0.69 20.63 16 11 O -0.63 -34.49 15.78 -3.06 -0.05 -34.53 16 12 C 0.07 2.12 6.17 85.56 0.53 2.65 16 13 N -0.69 -19.54 6.12 -517.95 -3.17 -22.72 16 14 C 0.06 1.03 5.80 86.30 0.50 1.53 16 15 C 0.13 2.53 5.93 86.38 0.51 3.04 16 16 N -0.71 -10.16 5.55 -466.94 -2.59 -12.75 16 17 C 0.59 12.69 7.79 86.49 0.67 13.36 16 18 O -0.58 -19.02 16.86 -4.25 -0.07 -19.09 16 19 C -0.07 -1.10 6.99 40.01 0.28 -0.82 16 20 C -0.07 -1.54 10.37 22.58 0.23 -1.30 16 21 C -0.27 -3.71 6.13 -20.12 -0.12 -3.83 16 22 C 0.59 9.76 8.09 86.65 0.70 10.46 16 23 N -0.83 -3.70 8.86 -175.91 -1.56 -5.26 16 24 O -0.61 -17.60 17.76 -4.07 -0.07 -17.67 16 25 C 0.13 0.22 11.43 84.32 0.96 1.19 16 26 N -0.50 -1.73 5.91 -183.35 -1.08 -2.81 16 27 H 0.44 -2.16 8.14 -92.71 -0.75 -2.91 16 28 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.35 10.70 8.43 -89.69 -0.76 9.95 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.42 2.04 7.55 -92.71 -0.70 1.34 16 38 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.42 -2.02 7.74 -92.70 -0.72 -2.73 16 40 H 0.41 1.42 8.93 -92.71 -0.83 0.59 16 41 H 0.25 -2.71 7.44 -2.91 -0.02 -2.73 16 Total: -1.00 -94.99 366.25 -5.00 -99.98 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -3.32 Total: 19.67 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 6.23 Total: 28.84 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -9.75 Total: -121.69 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: -0.19 Total: -71.30 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -94.99 -5.00 -99.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135816333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.260 kcal (2) G-P(sol) polarization free energy of solvation -94.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds