Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86808 * 119.99709 * 2 1 4 4 H 1.48495 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47080 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47017 * 59.99887 * 3 2 1 7 7 C 1.38943 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00199 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99920 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47280 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99566 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 0.97005 * 119.99794 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99465 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47029 * 60.00037 * 12 10 9 30 30 H 1.09003 * 109.46949 * 299.99857 * 12 10 9 31 31 H 1.00898 * 110.99612 * 303.95183 * 13 12 10 32 32 H 1.09001 * 109.46901 * 59.99571 * 14 13 12 33 33 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 34 34 H 1.09001 * 109.46832 * 59.99813 * 15 14 13 35 35 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 36 36 H 0.96995 * 120.00423 * 359.97438 * 16 15 14 37 37 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 38 38 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 39 39 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.4983 -7.2708 0.0016 15 6 2.5232 -8.4068 0.0015 16 7 1.8248 -9.6945 0.0020 17 6 2.5296 -10.8433 0.0026 18 8 3.7420 -10.8110 0.0021 19 6 1.8112 -12.1681 0.0026 20 6 2.8208 -13.2870 0.0026 21 6 3.1296 -13.9395 1.1812 22 6 4.0551 -14.9661 1.1815 23 6 4.6735 -15.3412 0.0030 24 6 4.3671 -14.6896 -1.1764 25 6 3.4350 -13.6655 -1.1790 26 9 3.1301 -13.0318 -2.3326 27 1 -0.4850 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6169 -4.9208 -0.8886 30 1 0.6176 -4.9204 0.8914 31 1 2.8333 -5.9127 -0.7798 32 1 0.8736 -7.3453 -0.8886 33 1 0.8731 -7.3451 0.8914 34 1 3.1481 -8.3323 0.8914 35 1 3.1480 -8.3323 -0.8886 36 1 0.8552 -9.7205 0.0028 37 1 1.1860 -12.2424 0.8924 38 1 1.1866 -12.2428 -0.8876 39 1 2.6476 -13.6471 2.1024 40 1 4.2961 -15.4751 2.1030 41 1 5.3967 -16.1432 0.0044 42 1 4.8505 -14.9825 -2.0967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149692893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -122.495216 kcal Electronic energy + Delta-G solvation = -25137.489630 eV Core-core repulsion = 21030.489941 eV Total energy + Delta-G solvation = -4106.999690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.92178 -40.99767 -40.17192 -39.60905 -37.48577 -36.00532 -35.21000 -33.97880 -33.27452 -31.46271 -30.81223 -28.74085 -27.37938 -25.53321 -23.74780 -23.34765 -22.80087 -21.38458 -21.10790 -19.92853 -18.63264 -18.26763 -17.67249 -17.53229 -17.35253 -17.16974 -16.59496 -16.53448 -16.37539 -16.23768 -15.84754 -15.36656 -15.13161 -15.02883 -14.88057 -14.39272 -14.24123 -14.10416 -14.01077 -13.53944 -13.34209 -13.17594 -13.12221 -12.92580 -12.59646 -12.47930 -12.41356 -12.35212 -12.12075 -11.95699 -11.52338 -11.10265 -10.37725 -10.16058 -10.02175 -9.90184 -9.59824 -9.39784 -8.47713 -5.96351 0.18961 0.28086 1.36308 1.41955 1.55983 1.60133 2.02455 2.04704 2.30199 2.68798 3.04476 3.19708 3.33936 3.52071 3.54985 3.78875 3.84579 4.02525 4.09150 4.11594 4.29715 4.31291 4.41270 4.45417 4.50084 4.53025 4.57234 4.60771 4.88206 4.92691 4.98668 5.11719 5.22450 5.35323 5.38431 5.40791 5.48523 5.83937 5.97547 6.06541 6.29791 6.52391 6.59476 7.12142 7.23513 7.55371 8.11151 8.69759 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.041252 B = 0.001549 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.583930 B =18068.874701 C =18145.164717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.687 5.687 14 C 0.059 3.941 15 C 0.128 3.872 16 N -0.713 5.713 17 C 0.509 3.491 18 O -0.583 6.583 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.094 4.094 24 C -0.169 4.169 25 C 0.079 3.921 26 F -0.154 7.154 27 H 0.278 0.722 28 H 0.398 0.602 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.345 0.655 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.420 0.580 37 H 0.147 0.853 38 H 0.121 0.879 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -32.432 1.253 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.320 5.320 14 C -0.070 4.070 15 C 0.003 3.997 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.462 6.462 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.188 4.188 25 C 0.060 3.940 26 F -0.133 7.133 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.258 0.742 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.904 -32.194 1.884 32.305 hybrid contribution -0.615 1.282 -1.396 1.993 sum -2.519 -30.912 0.489 31.018 Atomic orbital electron populations 1.69670 1.06744 1.29258 1.50272 1.26015 0.96557 1.02326 0.96212 0.84877 0.77962 0.77152 0.78375 1.20005 1.19518 1.19536 1.19704 0.92701 0.84131 1.49993 0.90485 1.41915 1.09371 1.04641 1.64973 1.20950 0.88268 0.86330 0.82245 1.90507 1.16068 1.88000 1.56703 1.21530 0.93721 0.87478 1.03661 1.59922 1.19393 1.00960 1.51717 1.22075 0.95191 0.86729 1.02977 1.21020 0.95021 0.82101 1.01543 1.45709 1.11265 1.04613 1.75071 1.21104 0.87597 0.86616 0.74992 1.90734 1.16330 1.88278 1.50880 1.20668 0.97167 0.87308 1.08298 1.19619 1.00490 0.98917 0.92902 1.21306 0.97370 0.95045 0.96951 1.21605 0.96350 0.97473 0.99508 1.21401 0.99132 0.99417 0.91252 1.21407 0.98833 0.97072 1.01463 1.17963 0.99263 0.95039 0.81714 1.91442 1.92162 1.81443 1.48220 0.91256 0.76818 0.90925 0.87142 0.83697 0.92532 0.88506 0.92431 0.93206 0.74232 0.83553 0.86099 0.82738 0.82515 0.82445 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.18 5.29 -306.99 -1.62 -30.80 16 10 C 0.43 20.62 7.82 87.66 0.69 21.30 16 11 O -0.63 -35.27 15.78 -3.08 -0.05 -35.32 16 12 C 0.07 2.23 6.17 85.56 0.53 2.75 16 13 N -0.69 -21.07 6.13 -517.93 -3.17 -24.24 16 14 C 0.06 1.20 5.80 86.30 0.50 1.70 16 15 C 0.13 2.88 5.93 86.38 0.51 3.39 16 16 N -0.71 -11.77 5.56 -463.06 -2.57 -14.35 16 17 C 0.51 10.72 7.82 87.66 0.69 11.41 16 18 O -0.58 -18.67 15.96 -3.03 -0.05 -18.72 16 19 C -0.10 -1.21 5.56 29.10 0.16 -1.05 16 20 C -0.12 -2.03 4.43 -19.82 -0.09 -2.12 16 21 C -0.09 -1.16 9.67 22.26 0.22 -0.95 16 22 C -0.13 -1.47 10.04 22.27 0.22 -1.25 16 23 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 24 C -0.17 -2.85 10.03 22.31 0.22 -2.62 16 25 C 0.08 1.65 7.14 22.38 0.16 1.81 16 26 F -0.15 -3.72 16.66 44.97 0.75 -2.97 16 27 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 28 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.34 11.45 8.43 -89.70 -0.76 10.70 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.42 3.51 8.47 -92.71 -0.79 2.73 16 37 H 0.15 0.71 8.01 -2.39 -0.02 0.69 16 38 H 0.12 1.17 7.94 -2.39 -0.02 1.16 16 39 H 0.15 1.18 8.04 -2.91 -0.02 1.16 16 40 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -80.69 372.18 -0.29 -80.97 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -1.19 Total: 34.27 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.31 Total: 14.96 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -7.09 Total: -118.27 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.75 Total: -2.97 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.69 -0.29 -80.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149692893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.522 kcal (2) G-P(sol) polarization free energy of solvation -80.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds